MELO3C019565T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019565T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Autophagy protein 5
Location	chr6 : 12125704 .. 12127076 (-)
Sequence length	474

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATAGCAGGACAACTAATAACAGGTATGACAACCACTTTTAGGCATTCTGTGCTTCTACTGGTAGTTTCTTTGTCCTCTGCATCTAAGTTTGCATGTTGAAGATTTATTTTGTTGACCCTTTTGCTCTTCGTTCAGATGGTTACATTTTGTAATATATTCCCAATAATTTGTGTCTTGACTATCTTCTATTCTTTTAAAAAACTTCTCCGTCTAGTGGAGAGTAATTTGCTATATATCATTTATTGTTTTGATTTCATCAAATATGGGTTTTCTCTCGGAGGGGGAGAGTTGTTCCAAATTATTGTTTTGATTTCAAATGTGAGACGTTTTGGTTCTTATGCTAAAAAGATTCATCAACTTCAAACTAATAGTGTTTTATCATTCAACTTTCTCCCTTTTCTATTTGAGACGCAGACACAAAAGAATCTCTGCTAATGATTCTGTATGTCAAGCAAAGCAAGTTTGCAAGATATTGGATTTCCATCCTATATGTGGGTTGCATGTGTATGATTTTTAAATTTTCTGTCACCTTTGTTACTCTTTCCCCTCATGTCTAATATTCATTTATGCTATCATTTCACTTGTTAGGATAAGTTTCTTATTACTTCAGCATGTCCAGGTCGAATTCCCGTTCGATTGTATGTAAGGAATTTAGGTGATGATTTTGATAATTTAGAAGATGCACCACCAGTTAACAATTGGGATGATGTCTCATACATTAATCGTCCCGTAGAGATCCAAGAAGAAGGTAAAGCAACGTGAACTATCACTTTTTGTTTATAGGAACGGTCTATTATATGAGCACAGTGTTATTGGATGTGTGATTGACTAAGCCAGATTTATGCTGTCCAATTGATAAAAGAAAGACTAGAGGCCAATTTATAAACATGGAGAACTGAGTGTAGATTGATTTTTCACGATCTGTCTGAGAGTTTTTGTGCTTTAGAAATATAGTTGTCATACTGGTTTAAGGTGTATATCCATCCATGACCACAAAGGTCAACAGTACAATGTCTAGGCATATGAAGAGATTTTCTTCCTCATCTCCATACATTGCAGGTAAGTGCTTCACCTTACATGATGCTGTTAGGAGTCTGTTACCTGAGCTTTTTACCGAGAAGGCGACTACCAAGGACGAATCAACAAATGTTATAGGCGAAGAACAAAGTGATAGTACAGAACAGTTGGATTGTACCAAAACAGAAGGGGGATCTACTTCTTCTGAGGAATATTTGCAATCTTATCATCCTAGCATCAAGCTGGTTAGGATCCAAGGGATTGAACCAAAAGGCCAAATTCCTTTCTCCTGGGTAGTGAACAACTTAATGAATCCTGAGTACTTCCTTCATATCTGTGTTTTTGTATGA

mRNA sequence

ATGGATATAGCAGGACAACTAATAACAGCATGTCCAGGTCGAATTCCCGTTCGATTGTATGTAAGGAATTTAGGTGATGATTTTGATAATTTAGAAGATGCACCACCAGTTAACAATTGGGATGATGTCTCATACATTAATCGTCCCGTAGAGATCCAAGAAGAAGGTAAGTGCTTCACCTTACATGATGCTGTTAGGAGTCTGTTACCTGAGCTTTTTACCGAGAAGGCGACTACCAAGGACGAATCAACAAATGTTATAGGCGAAGAACAAAGTGATAGTACAGAACAGTTGGATTGTACCAAAACAGAAGGGGGATCTACTTCTTCTGAGGAATATTTGCAATCTTATCATCCTAGCATCAAGCTGGTTAGGATCCAAGGGATTGAACCAAAAGGCCAAATTCCTTTCTCCTGGGTAGTGAACAACTTAATGAATCCTGAGTACTTCCTTCATATCTGTGTTTTTGTATGA

Coding sequence (CDS)

ATGGATATAGCAGGACAACTAATAACAGCATGTCCAGGTCGAATTCCCGTTCGATTGTATGTAAGGAATTTAGGTGATGATTTTGATAATTTAGAAGATGCACCACCAGTTAACAATTGGGATGATGTCTCATACATTAATCGTCCCGTAGAGATCCAAGAAGAAGGTAAGTGCTTCACCTTACATGATGCTGTTAGGAGTCTGTTACCTGAGCTTTTTACCGAGAAGGCGACTACCAAGGACGAATCAACAAATGTTATAGGCGAAGAACAAAGTGATAGTACAGAACAGTTGGATTGTACCAAAACAGAAGGGGGATCTACTTCTTCTGAGGAATATTTGCAATCTTATCATCCTAGCATCAAGCTGGTTAGGATCCAAGGGATTGAACCAAAAGGCCAAATTCCTTTCTCCTGGGTAGTGAACAACTTAATGAATCCTGAGTACTTCCTTCATATCTGTGTTTTTGTATGA

Protein sequence

MDIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKCFTLHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKTEGGSTSSEEYLQSYHPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV*

Homology

[Close]

BLAST of MELO3C019565T2 vs. Swiss-Prot
Match: ATG5_ARATH (Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-38
Identity = 88/158 (55.70%), Postives = 108/158 (68.35%), Query Frame = 1


Query: 2   DIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVE-IQEEGKCFT 61
           ++AGQ+ TA   RIPVRLYVR+L  DF+NLED P ++ WDD+SY+NRPVE ++EEGKCFT
Sbjct: 199 EVAGQVKTA---RIPVRLYVRSLNKDFENLEDVPEIDTWDDISYLNRPVEFLKEEGKCFT 258

Query: 62  LHDAVRSLLPELFTEKATTKDESTNVIGEEQS-DSTEQLDCTKTEGGSTSSEEYLQSYHP 121
           L DA++SLLPE   ++A T        GEE+S D TE+ D ++  G              
Sbjct: 259 LRDAIKSLLPEFMGDRAQTS-------GEERSIDDTEEADGSREMG-------------- 318

Query: 122 SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
            IKLVRIQGIE K +IPFSWVVNNLMNPE++LHI V V
Sbjct: 319 EIKLVRIQGIEMKLEIPFSWVVNNLMNPEFYLHISVLV 332

[Close]

BLAST of MELO3C019565T2 vs. Swiss-Prot
Match: ATG5_ORYSI (Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 5.9e-29
Identity = 72/157 (45.86%), Postives = 100/157 (63.69%), Query Frame = 1


Query: 12  PGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEI-QEEGKCF-TLHDAVRSLL 71
           P R+PVRLYVR++ +D  +LEDA PV +W+ +SYINRP E+ +EEG+ + TL  A+++LL
Sbjct: 214 PCRVPVRLYVRSVQEDLYDLEDALPVGDWESISYINRPFEVRREEGRSYITLEHALKTLL 273

Query: 72  PELFTEKAT-------TKDESTNVIGEEQSDSTEQLDCTKTEGGSTSS--EEYLQSYHPS 131
           PE F+ KA+       T  ++ +    + SD T +  C K E  ++SS  E  + +    
Sbjct: 274 PEFFSSKASRIPDDSETAPQAPDSAPNDDSDVTPR-SCEKLESSASSSPQEANVANKGKI 333

Query: 132 IKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
           +KLVR+QGIE    IPF WV NNL NPE +LHICV+V
Sbjct: 334 VKLVRVQGIEVDMDIPFLWVANNLKNPECYLHICVYV 369

[Close]

BLAST of MELO3C019565T2 vs. Swiss-Prot
Match: ATG5_ORYSJ (Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.9e-29
Identity = 72/157 (45.86%), Postives = 100/157 (63.69%), Query Frame = 1


Query: 12  PGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEI-QEEGKCF-TLHDAVRSLL 71
           P R+PVRLYVR++ +D  +LEDA PV +W+ +SYINRP E+ +EEG+ + TL  A+++LL
Sbjct: 214 PCRVPVRLYVRSVQEDLYDLEDALPVGDWESISYINRPFEVRREEGRSYITLEHALKTLL 273

Query: 72  PELFTEKAT-------TKDESTNVIGEEQSDSTEQLDCTKTEGGSTSS--EEYLQSYHPS 131
           PE F+ KA+       T  ++ +    + SD T +  C K E  ++SS  E  + +    
Sbjct: 274 PEFFSSKASRIPDDSETAPQAPDSAPNDDSDVTPR-SCEKLESSASSSPQEANVANKGKI 333

Query: 132 IKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
           +KLVR+QGIE    IPF WV NNL NPE +LHICV+V
Sbjct: 334 VKLVRVQGIEVDMDIPFLWVANNLKNPECYLHICVYV 369

[Close]

BLAST of MELO3C019565T2 vs. TrEMBL
Match: A0A0A0L933_CUCSA (Autophagy protein 5 OS=Cucumis sativus GN=Csa_3G197940 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.3e-72
Identity = 142/158 (89.87%), Postives = 145/158 (91.77%), Query Frame = 1


Query: 1   MDIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKCFT 60
           MDIA QLIT   GRIPVRLYVRNLGDDFD+LEDAPPVNNWDDVSYINRPVEI+EEGKCFT
Sbjct: 91  MDIA-QLIT---GRIPVRLYVRNLGDDFDHLEDAPPVNNWDDVSYINRPVEIREEGKCFT 150

Query: 61  LHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKT-EGGSTSSEEYLQSYHP 120
           LHDAVRSLLPELF EK TTK+ESTNV  E QSDSTEQLDCTKT EGGS  SEEY QSYHP
Sbjct: 151 LHDAVRSLLPELFAEKGTTKEESTNVPSEGQSDSTEQLDCTKTEEGGSNFSEEYFQSYHP 210

Query: 121 SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
           SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV
Sbjct: 211 SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 244

[Close]

BLAST of MELO3C019565T2 vs. TrEMBL
Match: V4U4U7_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.3e-40
Identity = 91/160 (56.88%), Postives = 117/160 (73.12%), Query Frame = 1


Query: 2   DIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQ-EEGKCFT 61
           D AGQ+ T   GRIPVRLYV ++ +DFD+LEDAP ++ WD +S+INRPVE++ EEGKCFT
Sbjct: 198 DFAGQVKT---GRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRTEEGKCFT 257

Query: 62  LHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKTEGGSTSSEEYLQSY--- 121
           LHDA+++LLPE FT+K    DES  +  EE + S+E     K    +T  EE L  +   
Sbjct: 258 LHDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNK----NTEVEEILYEHVTR 317

Query: 122 HPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
           +  IKLVRIQGIEPK +IPFSWVVNNLMNP+YFL++C+ V
Sbjct: 318 NAEIKLVRIQGIEPKLEIPFSWVVNNLMNPDYFLYMCICV 350

[Close]

BLAST of MELO3C019565T2 vs. TrEMBL
Match: V4RJI1_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.3e-40
Identity = 91/160 (56.88%), Postives = 117/160 (73.12%), Query Frame = 1


Query: 2   DIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQ-EEGKCFT 61
           D AGQ+ T   GRIPVRLYV ++ +DFD+LEDAP ++ WD +S+INRPVE++ EEGKCFT
Sbjct: 200 DFAGQVKT---GRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRTEEGKCFT 259

Query: 62  LHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKTEGGSTSSEEYLQSY--- 121
           LHDA+++LLPE FT+K    DES  +  EE + S+E     K    +T  EE L  +   
Sbjct: 260 LHDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNK----NTEVEEILYEHVTR 319

Query: 122 HPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
           +  IKLVRIQGIEPK +IPFSWVVNNLMNP+YFL++C+ V
Sbjct: 320 NAEIKLVRIQGIEPKLEIPFSWVVNNLMNPDYFLYMCICV 352

[Close]

BLAST of MELO3C019565T2 vs. TrEMBL
Match: V4S1S6_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-39
Identity = 90/161 (55.90%), Postives = 116/161 (72.05%), Query Frame = 1


Query: 2   DIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEI--QEEGKCF 61
           D AGQ+ T   GRIPVRLYV ++ +DFD+LEDAP ++ WD +S+INRPVE+  +E GKCF
Sbjct: 198 DFAGQVKT---GRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRTEEAGKCF 257

Query: 62  TLHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKTEGGSTSSEEYLQSY-- 121
           TLHDA+++LLPE FT+K    DES  +  EE + S+E     K    +T  EE L  +  
Sbjct: 258 TLHDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNK----NTEVEEILYEHVT 317

Query: 122 -HPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
            +  IKLVRIQGIEPK +IPFSWVVNNLMNP+YFL++C+ V
Sbjct: 318 RNAEIKLVRIQGIEPKLEIPFSWVVNNLMNPDYFLYMCICV 351

[Close]

BLAST of MELO3C019565T2 vs. TrEMBL
Match: M5XBI8_PRUPE (Autophagy protein 5 OS=Prunus persica GN=PRUPE_ppa007660mg PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.7e-39
Identity = 90/165 (54.55%), Postives = 117/165 (70.91%), Query Frame = 1


Query: 2   DIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQ--EEGKCF 61
           D +GQ+     GR+PVRLYV ++ +DF++LEDAP +++WD VSYINRPVEIQ  E G+CF
Sbjct: 191 DFSGQVKA---GRVPVRLYVWSVSEDFEDLEDAPQIDSWDKVSYINRPVEIQGGEGGRCF 250

Query: 62  TLHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCT---KTEGGSTSSEEYLQS 121
           TLHDAV+SLLPE F +K+ T +ES  V G+E        D +   K E    +S E++ S
Sbjct: 251 TLHDAVKSLLPEYFLDKSLTNEESLTV-GDEHEQRVSSEDASSDRKAEEEVENSSEHITS 310

Query: 122 YHP----SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
            +     +IKLVRIQGI PK +IPFSWV NNLMNPE+FLHICV++
Sbjct: 311 CYQHDDAAIKLVRIQGIHPKLEIPFSWVANNLMNPEHFLHICVYL 351

[Close]

BLAST of MELO3C019565T2 vs. TAIR10
Match: AT5G17290.1 (AT5G17290.1 autophagy protein Apg5 family)

HSP 1 Score: 160.6 bits (405), Expect = 7.8e-40
Identity = 88/158 (55.70%), Postives = 108/158 (68.35%), Query Frame = 1


Query: 2   DIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVE-IQEEGKCFT 61
           ++AGQ+ TA   RIPVRLYVR+L  DF+NLED P ++ WDD+SY+NRPVE ++EEGKCFT
Sbjct: 199 EVAGQVKTA---RIPVRLYVRSLNKDFENLEDVPEIDTWDDISYLNRPVEFLKEEGKCFT 258

Query: 62  LHDAVRSLLPELFTEKATTKDESTNVIGEEQS-DSTEQLDCTKTEGGSTSSEEYLQSYHP 121
           L DA++SLLPE   ++A T        GEE+S D TE+ D ++  G              
Sbjct: 259 LRDAIKSLLPEFMGDRAQTS-------GEERSIDDTEEADGSREMG-------------- 318

Query: 122 SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
            IKLVRIQGIE K +IPFSWVVNNLMNPE++LHI V V
Sbjct: 319 EIKLVRIQGIEMKLEIPFSWVVNNLMNPEFYLHISVLV 332

[Close]

BLAST of MELO3C019565T2 vs. NCBI nr
Match: gi|659112388|ref|XP_008456194.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo])

HSP 1 Score: 313.2 bits (801), Expect = 2.7e-82
Identity = 154/157 (98.09%), Postives = 154/157 (98.09%), Query Frame = 1


Query: 1   MDIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKCFT 60
           MDIAGQLIT   GRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKCFT
Sbjct: 166 MDIAGQLIT---GRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKCFT 225

Query: 61  LHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKTEGGSTSSEEYLQSYHPS 120
           LHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKTEGGSTSSEEYLQSYHPS
Sbjct: 226 LHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKTEGGSTSSEEYLQSYHPS 285

Query: 121 IKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
           IKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV
Sbjct: 286 IKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 319

[Close]

BLAST of MELO3C019565T2 vs. NCBI nr
Match: gi|659112386|ref|XP_008456193.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo])

HSP 1 Score: 313.2 bits (801), Expect = 2.7e-82
Identity = 154/157 (98.09%), Postives = 154/157 (98.09%), Query Frame = 1


Query: 1   MDIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKCFT 60
           MDIAGQLIT   GRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKCFT
Sbjct: 196 MDIAGQLIT---GRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKCFT 255

Query: 61  LHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKTEGGSTSSEEYLQSYHPS 120
           LHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKTEGGSTSSEEYLQSYHPS
Sbjct: 256 LHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKTEGGSTSSEEYLQSYHPS 315

Query: 121 IKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
           IKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV
Sbjct: 316 IKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 349

[Close]

BLAST of MELO3C019565T2 vs. NCBI nr
Match: gi|449446111|ref|XP_004140815.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 3.3e-72
Identity = 142/158 (89.87%), Postives = 145/158 (91.77%), Query Frame = 1


Query: 1   MDIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKCFT 60
           MDIA QLIT   GRIPVRLYVRNLGDDFD+LEDAPPVNNWDDVSYINRPVEI+EEGKCFT
Sbjct: 196 MDIA-QLIT---GRIPVRLYVRNLGDDFDHLEDAPPVNNWDDVSYINRPVEIREEGKCFT 255

Query: 61  LHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKT-EGGSTSSEEYLQSYHP 120
           LHDAVRSLLPELF EK TTK+ESTNV  E QSDSTEQLDCTKT EGGS  SEEY QSYHP
Sbjct: 256 LHDAVRSLLPELFAEKGTTKEESTNVPSEGQSDSTEQLDCTKTEEGGSNFSEEYFQSYHP 315

Query: 121 SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
           SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV
Sbjct: 316 SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 349

[Close]

BLAST of MELO3C019565T2 vs. NCBI nr
Match: gi|778679952|ref|XP_011651221.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 3.3e-72
Identity = 142/158 (89.87%), Postives = 145/158 (91.77%), Query Frame = 1


Query: 1   MDIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKCFT 60
           MDIA QLIT   GRIPVRLYVRNLGDDFD+LEDAPPVNNWDDVSYINRPVEI+EEGKCFT
Sbjct: 166 MDIA-QLIT---GRIPVRLYVRNLGDDFDHLEDAPPVNNWDDVSYINRPVEIREEGKCFT 225

Query: 61  LHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKT-EGGSTSSEEYLQSYHP 120
           LHDAVRSLLPELF EK TTK+ESTNV  E QSDSTEQLDCTKT EGGS  SEEY QSYHP
Sbjct: 226 LHDAVRSLLPELFAEKGTTKEESTNVPSEGQSDSTEQLDCTKTEEGGSNFSEEYFQSYHP 285

Query: 121 SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
           SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV
Sbjct: 286 SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 319

[Close]

BLAST of MELO3C019565T2 vs. NCBI nr
Match: gi|700202346|gb|KGN57479.1| (hypothetical protein Csa_3G197940 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 3.3e-72
Identity = 142/158 (89.87%), Postives = 145/158 (91.77%), Query Frame = 1


Query: 1   MDIAGQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKCFT 60
           MDIA QLIT   GRIPVRLYVRNLGDDFD+LEDAPPVNNWDDVSYINRPVEI+EEGKCFT
Sbjct: 91  MDIA-QLIT---GRIPVRLYVRNLGDDFDHLEDAPPVNNWDDVSYINRPVEIREEGKCFT 150

Query: 61  LHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKT-EGGSTSSEEYLQSYHP 120
           LHDAVRSLLPELF EK TTK+ESTNV  E QSDSTEQLDCTKT EGGS  SEEY QSYHP
Sbjct: 151 LHDAVRSLLPELFAEKGTTKEESTNVPSEGQSDSTEQLDCTKTEEGGSNFSEEYFQSYHP 210

Query: 121 SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 158
           SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV
Sbjct: 211 SIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 244

The following BLAST results are available for this feature:

BLAST of MELO3C019565T2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATG5_ARATH	1.4e-38	55.70	Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1	[more]
ATG5_ORYSI	5.9e-29	45.86	Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2	[more]
ATG5_ORYSJ	5.9e-29	45.86	Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1	[more]

BLAST of MELO3C019565T2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L933_CUCSA	2.3e-72	89.87	Autophagy protein 5 OS=Cucumis sativus GN=Csa_3G197940 PE=3 SV=1	[more]
V4U4U7_9ROSI	2.3e-40	56.88	Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1	[more]
V4RJI1_9ROSI	2.3e-40	56.88	Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1	[more]
V4S1S6_9ROSI	1.1e-39	55.90	Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1	[more]
M5XBI8_PRUPE	5.7e-39	54.55	Autophagy protein 5 OS=Prunus persica GN=PRUPE_ppa007660mg PE=3 SV=1	[more]

BLAST of MELO3C019565T2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17290.1	7.8e-40	55.70	autophagy protein Apg5 family	[more]

BLAST of MELO3C019565T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112388\|ref\|XP_008456194.1\|	2.7e-82	98.09	PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo]	[more]
gi\|659112386\|ref\|XP_008456193.1\|	2.7e-82	98.09	PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo]	[more]
gi\|449446111\|ref\|XP_004140815.1\|	3.3e-72	89.87	PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus]	[more]
gi\|778679952\|ref\|XP_011651221.1\|	3.3e-72	89.87	PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus]	[more]
gi\|700202346\|gb\|KGN57479.1\|	3.3e-72	89.87	hypothetical protein Csa_3G197940 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007239	Atg5

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006914	autophagy

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006914	autophagy
biological_process	GO:0006810	transport
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C019565	MELO3C019565	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C019565T2	MELO3C019565T2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C019565T2.cds3	MELO3C019565T2.cds3	CDS
MELO3C019565T2.cds2	MELO3C019565T2.cds2	CDS
MELO3C019565T2.cds1	MELO3C019565T2.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007239	Autophagy-related protein 5	PANTHER	PTHR13040	AUTOPHAGY PROTEIN 5	coord: 14..157 score: 3.6
IPR007239	Autophagy-related protein 5	PFAM	PF04106	APG5	coord: 14..155 score: 3.5
None	No IPR available	PANTHER	PTHR13040:SF2	AUTOPHAGY PROTEIN 5	coord: 14..157 score: 3.6