MELO3C019305T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019305T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA binding protein-like protein
Location	chr11 : 11125116 .. 11127263 (-)
Sequence length	889

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGGCCACTTCATACATTTTTAGAAATGAAAATGAAAATGAAAATGAGCTAGTTTTTACTATATTTTTTTTATTCGGCCTCTAAAGGCCAATTGTAAAATCTGTGTCCTCAATCTATGAGTGTATTTGTAATATCAAAAACTCGATCACAAGCAATCACCAATGCAATGATGAGCAACACGAACACCTTGCTACTGCTTGCTAGAAAAGCACTAACCAATATCCAAACTCCAATTCTTACCTTTCGTTGCTTCTGTTCTCAATCCACCTCCGCTCTCTCATCTTCTCCTTCTGCACCAAGCAATAAGCTCTTCGTAGCAGGTTCACTTCTCTTCCTCCATCCACTTACACAGATGCACCACCCACTTGATTCAGATGCCTTTTACATTCATGAATTTGATCTTGTTTCTTCCTTTTCCTTCCAGGGTTGTCTTGGTCCATGGATGAGAGATCATTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGGTAATCGTGCATGTTGAGCTTAACCCTTTGATTTACCAGTTGTAGTCTACATGTTCGACGAAATGTCTAGTTGATTTCAGACCTCGGTTCATCACGTGTGCTTCTGGGTCGAAACATTTTGCTTCCTTGACTTTCATAATTCCATGGTTTTTCTTTCTTTAAATTCTAAATTTTGTTTCATTGAAGTTTCTTCTTTTATAATTCTTGTAACGAGAGAGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTGTCGATTTGTGATTAAAGATCACTCTTAAAGACTGAAACTTTGCCAGCAAAATAACTTATGGTGGAGATGGAGTTCATTTGATCAATGAGATGAAATTGAATGGTCGATGTGAAACTCTCGCACAATCACTAGAGGAACTTTGATGCCCATTGGTGATCACTCTAAAAACTTCAACAGCAAATATCCTACGGGTTTCATTTATACAGTTGGGATAAACTTCAATGACCACTGAAACTTCAGTGATCATCACTTTACAAATTTTGATATGCAGTAGTGATCACACTGAAACTTCATCAGCAACTGCTTATTGATTTGAGGTCTTATGTTAAGATTTTAATAATTTATATGTTATCTTGACAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTTGGATTTGTGGATTTCGCAAATGAAAATGATGCACAGTGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCTTTAATTAATAAGTAGTTTGATAAGGTTTAGTCTGTCAACCATAAATTACTGAAAGTGAAAGTCATTGAGTTACTTGCAGGCGGTATTAGGGCGGCCATTGAAGATAAGCTTTGCCCTTGAAAAGGTCCGTGGAGGACCTGTTGCCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTGAAGCTCTTGGTATTTCATCTACATGTTGCATGAATATCTAATCTTGAACTATTCAATTCCTACTTCTAAATTTGATTTAGATCCTTGACTTGGTTTTGCTGGTATTGAAACCAATAGTATGAAGAACCTCAATTTAGTATTGTTTGATAATTACAGAGAAATACAATATCAATTTGGAAGAATTGACGGAACAAAATTCTTGTAGCACTAATCATGATTTATTTTTTATCAAATCATGATAGATAGTTCCCAATTTCTTTTATTAGAAATCTTGTTT

mRNA sequence

AAAAGGGCCACTTCATACATTTTTAGAAATGAAAATGAAAATGAAAATGAGCTAGTTTTTACTATATTTTTTTTATTCGGCCTCTAAAGGCCAATTGTAAAATCTGTGTCCTCAATCTATGAGTGTATTTGTAATATCAAAAACTCGATCACAAGCAATCACCAATGCAATGATGAGCAACACGAACACCTTGCTACTGCTTGCTAGAAAAGCACTAACCAATATCCAAACTCCAATTCTTACCTTTCGTTGCTTCTGTTCTCAATCCACCTCCGCTCTCTCATCTTCTCCTTCTGCACCAAGCAATAAGCTCTTCGTAGCAGGGTTGTCTTGGTCCATGGATGAGAGATCATTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTTGGATTTGTGGATTTCGCAAATGAAAATGATGCACAGTGTGCAAAAGATGCAATGGATGGAAAGGCGGTATTAGGGCGGCCATTGAAGATAAGCTTTGCCCTTGAAAAGGTCCGTGGAGGACCTGTTGCCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTGAAGCTCTTGGTATTTCATCTACATGTTGCATGAATATCTAATCTTGAACTATTCAATTCCTACTTCTAAATTTGATTTAGATCCTTGACTTGGTTTTGCTGGTATTGAAACCAATAGTATGAAGAACCTCAATTTAGTATTGTTTGATAATTACAGAGAAATACAATATCAATTTGGAAGAATTGACGGAACAAAATTCTTGTAGCACTAATCATGATTTATTTTTTATCAAATCATGATAGATAGTTCCCAATTTCTTTTATTAGAAATCTTGTTT

Coding sequence (CDS)

ATGAGTGTATTTGTAATATCAAAAACTCGATCACAAGCAATCACCAATGCAATGATGAGCAACACGAACACCTTGCTACTGCTTGCTAGAAAAGCACTAACCAATATCCAAACTCCAATTCTTACCTTTCGTTGCTTCTGTTCTCAATCCACCTCCGCTCTCTCATCTTCTCCTTCTGCACCAAGCAATAAGCTCTTCGTAGCAGGGTTGTCTTGGTCCATGGATGAGAGATCATTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTTGGATTTGTGGATTTCGCAAATGAAAATGATGCACAGTGTGCAAAAGATGCAATGGATGGAAAGGCGGTATTAGGGCGGCCATTGAAGATAAGCTTTGCCCTTGAAAAGGTCCGTGGAGGACCTGTTGCCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTGA

Protein sequence

MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS*

Homology

[Close]

BLAST of MELO3C019305T1 vs. Swiss-Prot
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S+KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV F+ E+ A  A 
Sbjct: 34  SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query: 122 DAMDGKAVLGRPLKISFALEK 143
             MDGK + GR ++++ A E+
Sbjct: 94  KEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of MELO3C019305T1 vs. Swiss-Prot
Match: RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.3e-18
Identity = 39/85 (45.88%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S+KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV F +   A  A 
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 122 DAMDGKAVLGRPLKISFALEKVRGG 147
            A+DG+ + GR +K+++A ++  GG
Sbjct: 99  QALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of MELO3C019305T1 vs. Swiss-Prot
Match: RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-16
Identity = 38/81 (46.91%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFV+F +E  A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 122 DAMDGKAVLGRPLKISFALEK 143
             MDGK + GR ++++ A ++
Sbjct: 94  SEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of MELO3C019305T1 vs. Swiss-Prot
Match: RBM3_CAPHI (RNA-binding protein 3 OS=Capra hircus GN=RBM3 PE=2 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-15
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 59  SAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQ 118
           S+   KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A 
Sbjct: 2   SSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 119 CAKDAMDGKAVLGRPLKISFALEKVRG 146
            A  AM+G+++ GR +++  A +  RG
Sbjct: 62  NAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of MELO3C019305T1 vs. Swiss-Prot
Match: RBM3_HUMAN (RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-15
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 59  SAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQ 118
           S+   KLFV GL+++ DE++L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A 
Sbjct: 2   SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 119 CAKDAMDGKAVLGRPLKISFALEKVRG 146
            A  AM+G+++ GR +++  A +  RG
Sbjct: 62  VAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of MELO3C019305T1 vs. TrEMBL
Match: A0A0A0LQB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416100 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.0e-66
Identity = 133/145 (91.72%), Postives = 137/145 (94.48%), Query Frame = 1


Query: 19  MSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERS 78
           MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS P+NKLFVAGLSWSMDERS
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERS 60

Query: 79  LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISF 138
           LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQCAKDAMDGKAVLGRPL+ISF
Sbjct: 61  LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISF 120

Query: 139 ALEKVRGGPVAVPRLSNINNLVGRR 164
           AL+KVRG PV VPRLSNINNLVGRR
Sbjct: 121 ALDKVRGEPVVVPRLSNINNLVGRR 144

[Close]

BLAST of MELO3C019305T1 vs. TrEMBL
Match: W9QHY3_9ROSA (Glycine-rich RNA-binding protein 2 OS=Morus notabilis GN=L484_004070 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.6e-44
Identity = 99/151 (65.56%), Postives = 116/151 (76.82%), Query Frame = 1


Query: 18  MMSNTNTLLL-LARKALTN-----IQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLS 77
           M S +NTL+  LAR+A +       Q P L  RCFCS  +S+ SSS +  +NKLFV GLS
Sbjct: 1   MSSMSNTLMSSLARRAASTTTIPVFQNPFLGLRCFCSSPSSSPSSSSTTSNNKLFVGGLS 60

Query: 78  WSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLG 137
           WS+DE+SLKDAFSSFGEV+EVRI+YDKDSGRSRGFGFV F  E DA  AKD+MDGKA+LG
Sbjct: 61  WSVDEKSLKDAFSSFGEVSEVRILYDKDSGRSRGFGFVHFLKEEDAVSAKDSMDGKALLG 120

Query: 138 RPLKISFALEKVRGGPVAVPRLSNINNLVGR 163
           RPL+ISFALEKVRG PV VPRLSN+ +   R
Sbjct: 121 RPLRISFALEKVRGVPVVVPRLSNVGDSFNR 151

[Close]

BLAST of MELO3C019305T1 vs. TrEMBL
Match: D7TEC9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01210 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.6e-42
Identity = 94/134 (70.15%), Postives = 110/134 (82.09%), Query Frame = 1


Query: 23  NTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSN-KLFVAGLSWSMDERSLKD 82
           N+L+ LAR+ALT +Q P   +RCFCS       S P+ PSN KLFVAGLSWS+DE+SLKD
Sbjct: 3   NSLVSLARRALT-VQNPAADWRCFCSSP-----SFPTPPSNTKLFVAGLSWSVDEKSLKD 62

Query: 83  AFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALE 142
           AFSSFG+VTEVRI+YDKDSGRSRGFGFV F+ E DA+ AKDAMDGKA LGRPL++S+ALE
Sbjct: 63  AFSSFGDVTEVRIMYDKDSGRSRGFGFVYFSKEVDARSAKDAMDGKAFLGRPLRVSYALE 122

Query: 143 KVRGGPVAVPRLSN 156
           KVRGGP+ VPR  N
Sbjct: 123 KVRGGPIVVPRRLN 130

[Close]

BLAST of MELO3C019305T1 vs. TrEMBL
Match: B9SH52_RICCO (Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1116940 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.4e-40
Identity = 85/118 (72.03%), Postives = 102/118 (86.44%), Query Frame = 1


Query: 48  SQSTSALSSSPSAPSN-KLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGF 107
           ++  + L +SPS P N KLFVAGLSWS+DE+SLKDAFSSFGEV+EVRI+YDKDSGRSRGF
Sbjct: 9   AKRATTLHNSPSPPPNSKLFVAGLSWSVDEKSLKDAFSSFGEVSEVRIMYDKDSGRSRGF 68

Query: 108 GFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS 165
           GFV+F+ EN+A CAKDAMDGKA+LGRPL+ISFALEKVRGGP+ VPRLS+  +   R +
Sbjct: 69  GFVNFSKENEAVCAKDAMDGKALLGRPLRISFALEKVRGGPIVVPRLSSAGDNSNRNA 126

[Close]

BLAST of MELO3C019305T1 vs. TrEMBL
Match: A0A059DEB2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01097 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.4e-40
Identity = 93/134 (69.40%), Postives = 107/134 (79.85%), Query Frame = 1


Query: 25  LLLLARKALTNIQTPILTF--RCFCSQSTSALSSSPSAPSN-KLFVAGLSWSMDERSLKD 84
           L+ L R+ALT ++ P  TF  RCFCS   S      S P N KLFV GLSWS+DE+SL+D
Sbjct: 5   LMFLVRRALT-VRNPNQTFSLRCFCSPPMSL-----SPPFNGKLFVGGLSWSVDEKSLQD 64

Query: 85  AFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALE 144
           AFSSFGEVTEV+I+YDKDSGRSRGFGFV F N+ DA CAKDAMDGKA+LGRPL+IS+ALE
Sbjct: 65  AFSSFGEVTEVKILYDKDSGRSRGFGFVCFTNQADATCAKDAMDGKALLGRPLRISYALE 124

Query: 145 KVRGGPVAVPRLSN 156
           KVRG PV VPRLS+
Sbjct: 125 KVRGAPVVVPRLSS 132

[Close]

BLAST of MELO3C019305T1 vs. TAIR10
Match: AT3G08000.1 (AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 161.0 bits (406), Expect = 6.3e-40
Identity = 78/99 (78.79%), Postives = 86/99 (86.87%), Query Frame = 1


Query: 55  SSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANE 114
           +SS ++PS+KLF+ GLSWS+DE+SLKDAFSSFGEV EVRI YDK SGRSRGFGFVDFA E
Sbjct: 33  TSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92

Query: 115 NDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRL 154
            DA  AKDAMDGK +LGRPL+ISFALE+VRGGPV VPRL
Sbjct: 93  GDALSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRL 131

[Close]

BLAST of MELO3C019305T1 vs. TAIR10
Match: AT3G23830.1 (AT3G23830.1 glycine-rich RNA-binding protein 4)

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-20
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S+KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV F+ E+ A  A 
Sbjct: 34  SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query: 122 DAMDGKAVLGRPLKISFALEK 143
             MDGK + GR ++++ A E+
Sbjct: 94  KEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of MELO3C019305T1 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3)

HSP 1 Score: 91.7 bits (226), Expect = 4.7e-19
Identity = 39/85 (45.88%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S+KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV F +   A  A 
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 122 DAMDGKAVLGRPLKISFALEKVRGG 147
            A+DG+ + GR +K+++A ++  GG
Sbjct: 99  QALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of MELO3C019305T1 vs. TAIR10
Match: AT4G13850.1 (AT4G13850.1 glycine-rich RNA-binding protein 2)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-17
Identity = 38/81 (46.91%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFV+F +E  A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 122 DAMDGKAVLGRPLKISFALEK 143
             MDGK + GR ++++ A ++
Sbjct: 94  SEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of MELO3C019305T1 vs. TAIR10
Match: AT1G74230.1 (AT1G74230.1 glycine-rich RNA-binding protein 5)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-16
Identity = 40/96 (41.67%), Postives = 63/96 (65.62%), Query Frame = 1


Query: 50  STSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV 109
           S+S L S     S+K+FV G+S+S DE  L++AFS +GEV + +I+ D+++GRSRGF FV
Sbjct: 21  SSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFV 80

Query: 110 DFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRG 146
            F +  +A  A   +DG+ + GR +++++A E+  G
Sbjct: 81  TFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERGSG 115

[Close]

BLAST of MELO3C019305T1 vs. NCBI nr
Match: gi|659111830|ref|XP_008455929.1| (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 2.3e-84
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1


Query: 1   MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSA 60
           MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSA
Sbjct: 1   MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSA 60

Query: 61  PSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCA 120
           PSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCA
Sbjct: 61  PSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCA 120

Query: 121 KDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS 165
           KDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
Sbjct: 121 KDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS 164

[Close]

BLAST of MELO3C019305T1 vs. NCBI nr
Match: gi|449468384|ref|XP_004151901.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 9.7e-67
Identity = 134/146 (91.78%), Postives = 138/146 (94.52%), Query Frame = 1


Query: 19  MSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERS 78
           MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS P+NKLFVAGLSWSMDERS
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERS 60

Query: 79  LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISF 138
           LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQCAKDAMDGKAVLGRPL+ISF
Sbjct: 61  LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISF 120

Query: 139 ALEKVRGGPVAVPRLSNINNLVGRRS 165
           AL+KVRG PV VPRLSNINNLVGRRS
Sbjct: 121 ALDKVRGEPVVVPRLSNINNLVGRRS 145

[Close]

BLAST of MELO3C019305T1 vs. NCBI nr
Match: gi|700208100|gb|KGN63219.1| (hypothetical protein Csa_2G416100 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 2.8e-66
Identity = 133/145 (91.72%), Postives = 137/145 (94.48%), Query Frame = 1


Query: 19  MSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERS 78
           MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS P+NKLFVAGLSWSMDERS
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERS 60

Query: 79  LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISF 138
           LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQCAKDAMDGKAVLGRPL+ISF
Sbjct: 61  LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISF 120

Query: 139 ALEKVRGGPVAVPRLSNINNLVGRR 164
           AL+KVRG PV VPRLSNINNLVGRR
Sbjct: 121 ALDKVRGEPVVVPRLSNINNLVGRR 144

[Close]

BLAST of MELO3C019305T1 vs. NCBI nr
Match: gi|703073023|ref|XP_010089438.1| (Glycine-rich RNA-binding protein 2 [Morus notabilis])

HSP 1 Score: 187.2 bits (474), Expect = 2.3e-44
Identity = 99/151 (65.56%), Postives = 116/151 (76.82%), Query Frame = 1


Query: 18  MMSNTNTLLL-LARKALTN-----IQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLS 77
           M S +NTL+  LAR+A +       Q P L  RCFCS  +S+ SSS +  +NKLFV GLS
Sbjct: 1   MSSMSNTLMSSLARRAASTTTIPVFQNPFLGLRCFCSSPSSSPSSSSTTSNNKLFVGGLS 60

Query: 78  WSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLG 137
           WS+DE+SLKDAFSSFGEV+EVRI+YDKDSGRSRGFGFV F  E DA  AKD+MDGKA+LG
Sbjct: 61  WSVDEKSLKDAFSSFGEVSEVRILYDKDSGRSRGFGFVHFLKEEDAVSAKDSMDGKALLG 120

Query: 138 RPLKISFALEKVRGGPVAVPRLSNINNLVGR 163
           RPL+ISFALEKVRG PV VPRLSN+ +   R
Sbjct: 121 RPLRISFALEKVRGVPVVVPRLSNVGDSFNR 151

[Close]

BLAST of MELO3C019305T1 vs. NCBI nr
Match: gi|1009158381|ref|XP_015897259.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 183.0 bits (463), Expect = 4.4e-43
Identity = 92/132 (69.70%), Postives = 111/132 (84.09%), Query Frame = 1


Query: 27  LLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSF 86
           ++ R+A T I  P L++RC+ S  +S  SS PS  ++KLFV GLSWS+DE+SLKDAFSSF
Sbjct: 8   IIFRRASTTIHNPTLSWRCYFSPPSS--SSPPS--NSKLFVGGLSWSVDEKSLKDAFSSF 67

Query: 87  GEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGG 146
           GEVTEVRI+YDKDSGRSRGFGFV F+ ENDA+CAKDAMDGKA LGRPL+ISFA +KVRGG
Sbjct: 68  GEVTEVRILYDKDSGRSRGFGFVHFSMENDAKCAKDAMDGKAFLGRPLRISFAFDKVRGG 127

Query: 147 PVAVPRLSNINN 159
           PV +PRL+NI +
Sbjct: 128 PVVIPRLTNIED 135

The following BLAST results are available for this feature:

BLAST of MELO3C019305T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBG4_ARATH	1.3e-18	54.32	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
RBG3_ARATH	8.3e-18	45.88	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
RBG2_ARATH	2.0e-16	46.91	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
RBM3_CAPHI	2.3e-15	45.98	RNA-binding protein 3 OS=Capra hircus GN=RBM3 PE=2 SV=2	[more]
RBM3_HUMAN	3.9e-15	44.83	RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1	[more]

BLAST of MELO3C019305T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB7_CUCSA	2.0e-66	91.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416100 PE=4 SV=1	[more]
W9QHY3_9ROSA	1.6e-44	65.56	Glycine-rich RNA-binding protein 2 OS=Morus notabilis GN=L484_004070 PE=4 SV=1	[more]
D7TEC9_VITVI	2.6e-42	70.15	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01210 PE=4 SV=...	[more]
B9SH52_RICCO	5.4e-40	72.03	Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1116940 P...	[more]
A0A059DEB2_EUCGR	5.4e-40	69.40	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01097 PE=4 SV=1	[more]

BLAST of MELO3C019305T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G08000.1	6.3e-40	78.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	7.2e-20	54.32	glycine-rich RNA-binding protein 4	[more]
AT5G61030.1	4.7e-19	45.88	glycine-rich RNA-binding protein 3	[more]
AT4G13850.1	1.2e-17	46.91	glycine-rich RNA-binding protein 2	[more]
AT1G74230.1	3.7e-16	41.67	glycine-rich RNA-binding protein 5	[more]

BLAST of MELO3C019305T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111830\|ref\|XP_008455929.1\|	2.3e-84	100.00	PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo]	[more]
gi\|449468384\|ref\|XP_004151901.1\|	9.7e-67	91.78	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis sativ...	[more]
gi\|700208100\|gb\|KGN63219.1\|	2.8e-66	91.72	hypothetical protein Csa_2G416100 [Cucumis sativus]	[more]
gi\|703073023\|ref\|XP_010089438.1\|	2.3e-44	65.56	Glycine-rich RNA-binding protein 2 [Morus notabilis]	[more]
gi\|1009158381\|ref\|XP_015897259.1\|	4.4e-43	69.70	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C019305	MELO3C019305	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C019305T1	MELO3C019305T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C019305T1.cds4	MELO3C019305T1.cds4	CDS
MELO3C019305T1.cds3	MELO3C019305T1.cds3	CDS
MELO3C019305T1.cds2	MELO3C019305T1.cds2	CDS
MELO3C019305T1.cds1	MELO3C019305T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 65..135 score: 1.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 64..137 score: 1.3
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 63..141 score: 2
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 55..144 score: 3.8
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 50..147 score: 2.69
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 62..142 score: 5.0