MELO3C019245T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C019245T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionReplicase polyprotein 1a
Locationchr11 : 9780731 .. 9781456 (+)
Sequence length654
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATAGATTCATTGTCTGTGAATAGACACTATTCGAATGATGTGTTAACTCAAGCATTGGGTACAAAAGAGCACAATGGTCGTGTACATGGGGTTGGTGGATACGTTACTCCGACAACGTACTTTCATTCAATTAAGAAAACATCAAAAGATGAGGCGAACATTCTAGTTGAGACTAAAGAACTCCGAAGGCAAGTTAGTGAATTAGAGGCACAAATTCGCACAAACTTGTCTACACCATTGTCTGCACATGGGAGTTGTTCATGGCCAATAATGTTAGAGCGGATTGAAGAGAAGAGTAAGAGAATAAAAGTGGAACCGATGGGCAAACCAAAAGAGAATGAAAAGAAAGGGAAGGAGGTGGTGAAGATGAATGAACCAGAGCTTGACGTCTCCAAGGTATGTAATCCACTATTAAACTGGAATGTCTAATATTATACGTCTTACTAAATGTGGATGTTCTTGAATTAGGAGAGAGACTTAATAAAAATGCCTACAAAAAAAGAAGTTGTATGTGAGTCGACATCAACTTTGCCATTAGCGTTGAAGTCGATTCTCAGATATGCTGAGAAGGTAATGGAGAAAGATTCCAGCATCACTTTTTCACTACCCGCTGACATTTTTGGTATTAGTCAAAAGACTTCTGTGCTTCGAGAGGATATCATTGATCTTTGTAACATGAACGAAGTCAAAACGTTTACATTGGTGGCCTATATGATGTAA

mRNA sequence

ATGAATATAGATTCATTGTCTGTGAATAGACACTATTCGAATGATGTGTTAACTCAAGCATTGGGTACAAAAGAGCACAATGGTCGTGTACATGGGGTTGGTGGATACGTTACTCCGACAACGTACTTTCATTCAATTAAGAAAACATCAAAAGATGAGGCGAACATTCTAGTTGAGACTAAAGAACTCCGAAGGCAAGTTAGTGAATTAGAGGCACAAATTCGCACAAACTTGTCTACACCATTGTCTGCACATGGGAGTTGTTCATGGCCAATAATGTTAGAGCGGATTGAAGAGAAGAGTAAGAGAATAAAAGTGGAACCGATGGGCAAACCAAAAGAGAATGAAAAGAAAGGGAAGGAGGTGGTGAAGATGAATGAACCAGAGCTTGACGTCTCCAAGGAGAGAGACTTAATAAAAATGCCTACAAAAAAAGAAGTTGTATGTGAGTCGACATCAACTTTGCCATTAGCGTTGAAGTCGATTCTCAGATATGCTGAGAAGGTAATGGAGAAAGATTCCAGCATCACTTTTTCACTACCCGCTGACATTTTTGGTATTAGTCAAAAGACTTCTGTGCTTCGAGAGGATATCATTGATCTTTGTAACATGAACGAAGTCAAAACGTTTACATTGGTGGCCTATATGATGTAA

Coding sequence (CDS)

ATGAATATAGATTCATTGTCTGTGAATAGACACTATTCGAATGATGTGTTAACTCAAGCATTGGGTACAAAAGAGCACAATGGTCGTGTACATGGGGTTGGTGGATACGTTACTCCGACAACGTACTTTCATTCAATTAAGAAAACATCAAAAGATGAGGCGAACATTCTAGTTGAGACTAAAGAACTCCGAAGGCAAGTTAGTGAATTAGAGGCACAAATTCGCACAAACTTGTCTACACCATTGTCTGCACATGGGAGTTGTTCATGGCCAATAATGTTAGAGCGGATTGAAGAGAAGAGTAAGAGAATAAAAGTGGAACCGATGGGCAAACCAAAAGAGAATGAAAAGAAAGGGAAGGAGGTGGTGAAGATGAATGAACCAGAGCTTGACGTCTCCAAGGAGAGAGACTTAATAAAAATGCCTACAAAAAAAGAAGTTGTATGTGAGTCGACATCAACTTTGCCATTAGCGTTGAAGTCGATTCTCAGATATGCTGAGAAGGTAATGGAGAAAGATTCCAGCATCACTTTTTCACTACCCGCTGACATTTTTGGTATTAGTCAAAAGACTTCTGTGCTTCGAGAGGATATCATTGATCTTTGTAACATGAACGAAGTCAAAACGTTTACATTGGTGGCCTATATGATGTAA

Protein sequence

MNIDSLSVNRHYSNDVLTQALGTKEHNGRVHGVGGYVTPTTYFHSIKKTSKDEANILVETKELRRQVSELEAQIRTNLSTPLSAHGSCSWPIMLERIEEKSKRIKVEPMGKPKENEKKGKEVVKMNEPELDVSKERDLIKMPTKKEVVCESTSTLPLALKSILRYAEKVMEKDSSITFSLPADIFGISQKTSVLREDIIDLCNMNEVKTFTLVAYMM*
Homology
[Close]
BLAST of MELO3C019245T1 vs. TrEMBL
Match: M5W193_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016078mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.0e-11
Identity = 68/239 (28.45%), Postives = 107/239 (44.77%), Query Frame = 1 

Query: 13  SNDVLTQALGTKEHNGRVHGVGGYVTPTTYFHSIK---------KTSKDEAN-------- 72
           SNDVLT ALG  EH GR+ GVG  V+P  YF+  K         +T K EA         
Sbjct: 287 SNDVLTMALGP-EHPGRLRGVGAGVSPRQYFNLPKPQRLGFDDQETKKMEAKAREEALRM 346

Query: 73  -------ILVETKELRRQVSEL---------EAQIRTNLSTPLSAHGSCSW-PIMLERIE 132
                  +  E +    Q+S+L         + +I  +   P+S   SCS   +    +E
Sbjct: 347 EARTKQFVEAEREHFLSQLSQLIPNFDPSMLKPRISQSPKNPMSDKASCSGGDVRSLHLE 406

Query: 133 EKSKRIKVEPMGKPKENEKKGKEVVKMNEPELDVSKERDLIKMPTKKEVVCESTSTLPLA 192
           + + ++      + KE EK+ +E  +  E E D  K  D +      EV   S    P +
Sbjct: 407 DDTAKMGKHQPDEEKEEEKRDEEKEEEKEKE-DEEKHDDKVI-----EVGAYSNMEAPSS 466

Query: 193 LKSILRYAEK-VMEKDSSITFSLPADIFGISQKTSVLREDIIDLCNMNEVKTFTLVAYM 217
           LK++ R+ E  ++ +D ++ F++  ++FG  + T +L EDI     M E+    L  YM
Sbjct: 467 LKTLCRFVETTLLPEDKTLQFTIDKEVFGGERDTFLLPEDITQFAGMEEIGATVLAVYM 518

[Close]
BLAST of MELO3C019245T1 vs. TrEMBL
Match: M5X7B7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016566mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.6e-10
Identity = 64/216 (29.63%), Postives = 96/216 (44.44%), Query Frame = 1 

Query: 13  SNDVLTQALGTKEHNGRVHGVGGYVTPTTYFH-------SIKKTSKDEANILV--ETKEL 72
           SNDVLT ALG  EH GRV GVG  ++P  YF+       S     KD   +L+  ETK++
Sbjct: 254 SNDVLTMALGP-EHPGRVRGVGARISPRQYFNLPKPQRVSFDDRLKDSLRVLLQEETKKM 313

Query: 73  RRQVSELEAQIRTNLSTPLSAHGSCSWPIMLERIEEKSKRIKVEPMGKPKENEKKGKEVV 132
             +  E   ++       LS       P M      +  RI   P     +        V
Sbjct: 314 EAKAREEALRMEARTKQLLSQLIPNFDPSM------RKPRISQSPKNPMSDKASCSGGDV 373

Query: 133 KMNEPELDVSKERDLIKMPTKK--EVVCESTSTLPLALKSILRYAEKVM-EKDSSITFSL 192
           +    E D +K     K   +K  +VV  S   +P +LKS+ RY E  +  +D ++ F++
Sbjct: 374 RSQHFEDDTAKNG---KHQEEKVIQVVDYSNMEVPSSLKSLCRYVETTLVPQDKTLHFTI 433

Query: 193 PADIFGISQKTSVLREDIIDLCNMNEVKTFTLVAYM 217
             ++FG+ + T +L EDI     M E+    +  YM
Sbjct: 434 DKEVFGLERDTFLLPEDITQFAGMEEIGATVIAVYM 459

[Close]
BLAST of MELO3C019245T1 vs. TrEMBL
Match: M5XNP2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022317mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.5e-10
Identity = 70/230 (30.43%), Postives = 103/230 (44.78%), Query Frame = 1 

Query: 13  SNDVLTQALGTKEHNGRVHGVGGYVTPTTYFH-------SIKKTSKDEANILV--ETKEL 72
           SNDVLT ALG  EH GRV GVG  ++P  YF+       S     KD   +L+  ETK++
Sbjct: 254 SNDVLTMALGP-EHPGRVRGVGAGISPRQYFNLPKPQRVSFDDRLKDSLRVLLQEETKKM 313

Query: 73  ----RRQVSELEAQI-------RTNLSTPLSAHGSCSWPIMLERIEEKSKRIKVEPMGKP 132
               R +   +EA+        R +  + LS   S   P ML+       RI   P    
Sbjct: 314 EAKAREEALRMEARTKQLVEAEREHFLSQLSQLISNFDPSMLK------PRISQSPKNPM 373

Query: 133 KENEKKGKEVVKMNEPELDVSK-----ERDLIKMPTKKEVVCESTSTLPLALKSILRYAE 192
            +        V+    E D +K     E  +IK      VV  S    P +LKS+ RY E
Sbjct: 374 SDKASCSGADVRSQHFEDDTAKNGKHKEEKVIK------VVDYSNMEAPSSLKSLCRYVE 433

Query: 193 KVM-EKDSSITFSLPADIFGISQKTSVLREDIIDLCNMNEVKTFTLVAYM 217
             +  +D ++ F++  ++FG+ + T +L EDI    +M E+    +  YM
Sbjct: 434 TTLVPQDKTLHFTIDKEVFGLERDTFLLPEDITQFADMEEIGATVIAVYM 470

[Close]
BLAST of MELO3C019245T1 vs. TrEMBL
Match: M5Y208_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024513mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.9e-10
Identity = 69/227 (30.40%), Postives = 106/227 (46.70%), Query Frame = 1 

Query: 13  SNDVLTQALGTKEHNGRVHGVGGYVTPTTYFH-------SIKKTSKDEANILV--ETKEL 72
           SNDVLT ALG  EH GRV GVG  V+P  YF+       S     KD   +L+  ETK++
Sbjct: 287 SNDVLTMALGP-EHPGRVRGVGAGVSPRQYFNLPKPQRVSFDDRLKDSLRVLLQEETKKM 346

Query: 73  ----RRQVSELEAQI-------RTNLSTPLSAHGSCSWPIMLE-RIEEKSKRIKVEPMGK 132
               R +   +EA+        R +  + LS       P ML+ RI +  K    +    
Sbjct: 347 EAKAREEALRMEARTKQLVEAEREHFLSQLSQLIPNFDPSMLKPRISQSPKNPMSDKASC 406

Query: 133 PKENEKKGKEVVKMNEPELDVSKERDLIKMPTKK-EVVCESTSTLPLALKSILRYAEK-V 192
              +  + KE  K +E + +  ++ D  K   K  EV   S    P +LK++ R+ E  +
Sbjct: 407 SGGDPDEEKEEEKRDEEKEEEKEKEDEEKHDDKVIEVGDYSNMEAPSSLKTLCRFVETTL 466

Query: 193 MEKDSSITFSLPADIFGISQKTSVLREDIIDLCNMNEVKTFTLVAYM 217
           + +D ++ F++  ++FG  + T +L EDI     M E+    L  YM
Sbjct: 467 LPEDKTLQFTIDKEVFGGERDTFLLPEDITQFAGMEEIGATVLAVYM 512

[Close]
BLAST of MELO3C019245T1 vs. TrEMBL
Match: M5X2X9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017257mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.7e-10
Identity = 64/219 (29.22%), Postives = 96/219 (43.84%), Query Frame = 1 

Query: 13  SNDVLTQALGTKEHNGRVHGVGGYVTPTTYFH-------SIKKTSKDEANILV--ETKEL 72
           SNDVLT ALG  EH GRV GVG  ++P  YF+       S     KD   +L+  ETK++
Sbjct: 176 SNDVLTMALGP-EHPGRVRGVGAGISPRQYFNLPKPQRVSFDDRLKDSLRVLLQEETKKM 235

Query: 73  RRQVSE--LEAQIRTN-LSTPLSAHGSCSWPIMLERIEEK--SKRIKVEPMGKPKENEKK 132
             +  E  L  + RT  L      H       ++   +      RI   P     +    
Sbjct: 236 EAKAREEALRMEARTKQLVEAEREHFLSQLSQLIPNFDPSMLKPRISQSPKNPMSDKASC 295

Query: 133 GKEVVKMNEPELDVSKERDLIKMPTKKEVVCESTSTLPLALKSILRYAEKVM-EKDSSIT 192
               V+    E D +K R   +    K VV  S    P +L S+ RY E  +  +D ++ 
Sbjct: 296 SGGDVRSQHFEDDTAKNRKHQEEKVIK-VVDYSNMKAPSSLNSLCRYVETTLVPQDKTLH 355

Query: 193 FSLPADIFGISQKTSVLREDIIDLCNMNEVKTFTLVAYM 217
           F++  ++FG+ + T +L EDI     M E++   +  YM
Sbjct: 356 FTIDKEVFGLERDTFLLPEDITQFAGMEEIRATVIAVYM 392

[Close]
BLAST of MELO3C019245T1 vs. NCBI nr
Match: gi|778714234|ref|XP_011657210.1| (PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 1.9e-25
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 1 

Query: 141 MPTKKEVVCESTSTLPLALKSILRYAEKVMEKDSSITFSLPADIFGISQKTSVLREDIID 200
           M  +KEVVCESTS LP+ +K ILRYAEK+MEKDSSIT  LP  IFGIS+KTSVLREDIID
Sbjct: 1   MTKEKEVVCESTSVLPMGMKLILRYAEKIMEKDSSITIPLPVGIFGISRKTSVLREDIID 60

Query: 201 LCNMNEVKTFTLVAYM 217
           LCNMNEVKTFTLVAYM
Sbjct: 61  LCNMNEVKTFTLVAYM 76

[Close]
BLAST of MELO3C019245T1 vs. NCBI nr
Match: gi|778708464|ref|XP_011656204.1| (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 4.6e-24
Identity = 82/218 (37.61%), Postives = 113/218 (51.83%), Query Frame = 1 

Query: 2   NIDSLSVNRHYSNDVLTQALGTKEHNGRVHGVGGYVTPTTYFHSIKKTSKDEANI---LV 61
           +I  + V++  S + L QALGT EH+GRV GVGG+VT T YFH+ K + K   NI     
Sbjct: 122 DISRIYVDKEPSPNDLAQALGTNEHSGRVRGVGGFVTRTAYFHTSKHSKKQSENIEKLRE 181

Query: 62  ETKELRRQVSELEAQIRTNLSTPLSAHGSCSWPIMLERIEEKSKRIKVEPMGKPKENEKK 121
           E ++L   V ELE+   T  STP  AH SCS P             ++E   +PKE    
Sbjct: 182 ENEKLCLGVQELESIHLTTQSTPTYAHASCSRP-------------RLEYDIQPKE---- 241

Query: 122 GKEVVKMNEPELDVSKERDLIKMPTKKEVVCESTSTLPLALKSILRYAEKVMEKDSSITF 181
                K+ E +++++ +  + ++    E V +  S++                      +
Sbjct: 242 -----KLQEEKMNITTKDAMERLLRFAEKVMDKDSSIR---------------------Y 296

Query: 182 SLPADIFGISQKTSVLREDIIDLCNMNEVKTFTLVAYM 217
            LP  +FGI +KT VLREDIIDLCNM EV TFTLVAYM
Sbjct: 302 QLPISLFGIGRKTFVLREDIIDLCNMREVNTFTLVAYM 296

[Close]
BLAST of MELO3C019245T1 vs. NCBI nr
Match: gi|659109765|ref|XP_008454865.1| (PREDICTED: trans-resveratrol di-O-methyltransferase-like [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 3.3e-22
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 1 

Query: 1  MNIDSLSVNRHYSNDVLTQALGTKEHNGRVHGVGGYVTPTTYFHSIKKTSKDEANILVET 60
          MN DS S+NR+YSNDVLTQALGTKEHNGRV G+G YVTP TY+HS+KKTSKDE NI++E 
Sbjct: 1  MNTDSSSMNRYYSNDVLTQALGTKEHNGRVRGIGEYVTPITYYHSVKKTSKDEVNIVLEI 60

Query: 61 KELRRQVSELEAQ 74
          +ELRR+   LEAQ
Sbjct: 61 EELRRRDELLEAQ 73

[Close]
BLAST of MELO3C019245T1 vs. NCBI nr
Match: gi|659123561|ref|XP_008461723.1| (PREDICTED: uncharacterized protein LOC103500255 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 

Query: 155 LPLALKSILRYAEKVMEKDSSITFSLPADIFGISQKTSVLREDIIDLCNMNEVKTFTLVA 214
           +PL LK+ILR+ EKVM+KDS I + LP  +FGI +KT VLREDIID CNM EVKT TLVA
Sbjct: 1   MPLPLKTILRFVEKVMDKDSGIRYQLPFLLFGIGRKTCVLREDIIDFCNMREVKTLTLVA 60

Query: 215 YM 217
           YM
Sbjct: 61  YM 62

[Close]
BLAST of MELO3C019245T1 vs. NCBI nr
Match: gi|645219320|ref|XP_008235163.1| (PREDICTED: uncharacterized protein LOC103334016 [Prunus mume])

HSP 1 Score: 83.2 bits (204), Expect = 6.2e-13
Identity = 64/217 (29.49%), Postives = 106/217 (48.85%), Query Frame = 1 

Query: 13  SNDVLTQALGTKEHNGRVHGVGGYVTPTTYFHSIKKTSKDEANILVETKELRRQ------ 72
           +NDVLT ALG  E +GRV GVGG+  P     ++ +   D  +IL E +++  Q      
Sbjct: 299 NNDVLTMALGAPEDSGRVRGVGGFFKP-----NVPQAQFDREDILDEVRKMIEQQRAWYE 358

Query: 73  --VSELEAQIRTNL-STPLSAHGSCSWPIMLERIEEKSKRIKVEPMGKPKENEKKGKEVV 132
             ++ELEA+I  N+ +TP+    S S P+        ++  K    GK    +K   E  
Sbjct: 359 AKIAELEAKINGNIRTTPI----SLSTPV-------PNRSEKASCSGK----KKNVLEDN 418

Query: 133 KMNEPELDVSKERDLI----KMPTKKEVVCESTSTLPLALKSILRYAEKVMEKDSSITFS 192
            +N  EL    +RD I    K   K + + +    LP +LK + RYAE+ M    +I+  
Sbjct: 419 AINFEELTFVGKRDTIKKRGKTAAKPQDLPKQDMNLPKSLKLLYRYAERAMLDGETISID 478

Query: 193 LPADIFGISQKTSVLREDIIDLCNMNEVKTFTLVAYM 217
           +   +FG+++   + +ED++    M E+    ++ YM
Sbjct: 479 MEEAVFGVAKTVYISQEDVMQFMEMKEISATCIIVYM 495

The following BLAST results are available for this feature:
BLAST of MELO3C019245T1 vs. TrEMBL
Match NameE-valueIdentityDescription
M5W193_PRUPE9.0e-1128.45Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016078mg PE=4 SV=1[more]
M5X7B7_PRUPE2.6e-1029.63Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016566mg PE=4 S... [more]
M5XNP2_PRUPE4.5e-1030.43Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022317mg PE=4 S... [more]
M5Y208_PRUPE5.9e-1030.40Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024513mg PE=4 SV=1[more]
M5X2X9_PRUPE7.7e-1029.22Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017257mg PE=4 S... [more]
BLAST of MELO3C019245T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778714234|ref|XP_011657210.1|1.9e-2581.58PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus][more]
gi|778708464|ref|XP_011656204.1|4.6e-2437.61PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus][more]
gi|659109765|ref|XP_008454865.1|3.3e-2273.97PREDICTED: trans-resveratrol di-O-methyltransferase-like [Cucumis melo][more]
gi|659123561|ref|XP_008461723.1|1.1e-1469.35PREDICTED: uncharacterized protein LOC103500255 [Cucumis melo][more]
gi|645219320|ref|XP_008235163.1|6.2e-1329.49PREDICTED: uncharacterized protein LOC103334016 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C019245MELO3C019245gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C019245T1MELO3C019245T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C019245T1.cds1MELO3C019245T1.cds1CDS
MELO3C019245T1.cds2MELO3C019245T1.cds2CDS


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 53..73
scor