MELO3C019112T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019112T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	10 kDa chaperonin family protein
Location	chr8 : 12312972 .. 12314710 (+)
Sequence length	699

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTGAACCAGTAGTAGGTTCCAAGAACCAAATGCGCTCTAAGAACTAACTTTCCACAACGCTGGAGTGATCGACTAATTTACGGAAGTACCCGCATCTCTTCACTGTCCACCAATGTCTATTTACGTAATTTAAACACTGATGGCTGCAAAACCCCCCCTCCTTAAACCCTACCTACACCATCCTTTCCTTTCTTTTAGGGTTTGAGGTTGAGATTTACTTTCTCTAATTGCTTCCAGATGGCCAAGCGTTTGCTTCCATTGCTCAATCGCGTTCTCATCGAGAAGATTGTTCCCCCTACCAAAACCAATTCCGGCATTTTGCTTCCTGAGAAGTCCAGTAAGGTGAATCTTCCTTTTCCATCACCCTTAAAACAAAATCTTCGTTACATTGTATGGGAATTCCTCGGAATTTCGATTTTCTCCTCCAATTTTTGCTTTTCCTTTCGATTTTTTTCTTCCCGTGATTCTTCAAATTTACCACACTCAATTCTCTGGGACGACTACCCTCATTTTCGTTCATGGGTTTTTTTTTTTCTTCCTTTTCTCGTTTAATAGTTGTTTGGTGTTTGGTTTCTTGTAAGGTTGGCTTCTAGTTGGGTTTTGAGCTCATTTATTGGTATCTGATTCATTTAAAGAAGACTTGTAATATGATTTGAAAGTATGAATGTTTTCATTTCCTTCTGATTTCAGTGTTAGTGACTGTTCAGTGATACGATTTGTAACGAACTCTCTTTTTTAAGAACCATTGCTTAACACAGAAGTGGATGTAGCTGCTGAACTGTGGGCATGGGATTAATCCGATGCAATTTTTCATTTTCAGCAGAAATCTATAGTAGTTCATAAGTTCTTTTTTCTTTTTATTTTTTTCCGTGGATGAGCTTTGCTGAATAACTTTGATCTAGGGCACCTCCTTCCATCAGGATTTTTTTAGATTCAGAATGATATGACTCTTTTGCTCATGATAAGTTTAAGTAGTCCATGGATTCTGGCTTGTGTTTTATAACTTAACCTCCCTGCATTAGAAGGACTAAATTAGCAAAACCTTTATTCCTGGAAGAGTATGTGTGAGTTGTCGAAGGTGGTTGTCATGAGTCTTATGAATTTCTCGTGTTTTCATTTGCGCTTCGACTTTGAACTTCGATTTTGACGATCTTTTGTAAGATTAGATACTATCATGCATGCTGGTCTCCTTTCTCTAGTGGGCTCCCATTCTTTGGTCTTGAATTTTTTATTCTACTATATTTTTTCATTTTTTTTTTCATGTTTTTCCTCAATCAAAGTTGTTATAGAAAAATAAAGGTTGCTCTGACAGTTCGGCTTTGTTACACAATTTGTGTATCGTTTATCGTGTGCTTTTTTTCTTAATTTTGTTCCTCATCTAGCTCAACTCTGGAAAAGTTATCGCGGTTGGTCCTGGGGCTCGTGACAGAGAGGGAAAGATTATTCCTATCTCTGTAAAGGAAGGTGACATCGTCCTCCTACCAGAATATGGAGGAAATGAAGTCAAGCTGGGAGAAAAGCAGTATGTATACCTGTTCTATTGCCTTTTATATTTATTTATGTAATTTTTTGTCTGTTATTTGCTCAAGAATTTGGTTTTAAAGTTAACCTGGAAGTTGAAAATGCCCTCAATTTCTCCATGTGGCCTATTCTTTGATCGTTTTTTTAGATTTTGTTGCTCTTGAACTTGCATGCTGTGCTGAACTTTAGGCTGTATTCTGGTGTTCTCTAATC

mRNA sequence

ATGTGGTGAACCAGTAGTAGGTTCCAAGAACCAAATGCGCTCTAAGAACTAACTTTCCACAACGCTGGAGTGATCGACTAATTTACGGAAGTACCCGCATCTCTTCACTGTCCACCAATGTCTATTTACGTAATTTAAACACTGATGGCTGCAAAACCCCCCCTCCTTAAACCCTACCTACACCATCCTTTCCTTTCTTTTAGGGTTTGAGGTTGAGATTTACTTTCTCTAATTGCTTCCAGATGGCCAAGCGTTTGCTTCCATTGCTCAATCGCGTTCTCATCGAGAAGATTGTTCCCCCTACCAAAACCAATTCCGGCATTTTGCTTCCTGAGAAGTCCAGTAAGCTCAACTCTGGAAAAGTTATCGCGGTTGGTCCTGGGGCTCGTGACAGAGAGGGAAAGATTATTCCTATCTCTGTAAAGGAAGGTGACATCGTCCTCCTACCAGAATATGGAGGAAATGAAGTCAAGCTGGGAGAAAAGCAGTATGTATACCTGTTCTATTGCCTTTTATATTTATTTATGTAATTTTTTGTCTGTTATTTGCTCAAGAATTTGGTTTTAAAGTTAACCTGGAAGTTGAAAATGCCCTCAATTTCTCCATGTGGCCTATTCTTTGATCGTTTTTTTAGATTTTGTTGCTCTTGAACTTGCATGCTGTGCTGAACTTTAGGCTGTATTCTGGTGTTCTCTAATC

Coding sequence (CDS)

ATGGCCAAGCGTTTGCTTCCATTGCTCAATCGCGTTCTCATCGAGAAGATTGTTCCCCCTACCAAAACCAATTCCGGCATTTTGCTTCCTGAGAAGTCCAGTAAGCTCAACTCTGGAAAAGTTATCGCGGTTGGTCCTGGGGCTCGTGACAGAGAGGGAAAGATTATTCCTATCTCTGTAAAGGAAGGTGACATCGTCCTCCTACCAGAATATGGAGGAAATGAAGTCAAGCTGGGAGAAAAGCAGTATGTATACCTGTTCTATTGCCTTTTATATTTATTTATGTAA

Protein sequence

MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISVKEGDIVLLPEYGGNEVKLGEKQYVYLFYCLLYLFM*

Homology

[Close]

BLAST of MELO3C019112T1 vs. Swiss-Prot
Match: CH10_ARATH (10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-30
Identity = 60/83 (72.29%), Postives = 72/83 (86.75%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          M KRL+P  NR+L+++++ P KT SGILLPEKSSKLNSGKVIAVGPG+RD++GK+IP+SV
Sbjct: 1  MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQY 84
          KEGD VLLPEYGG +VKLGE +Y
Sbjct: 61 KEGDTVLLPEYGGTQVKLGENEY 83

[Close]

BLAST of MELO3C019112T1 vs. Swiss-Prot
Match: CH10_BRANA (10 kDa chaperonin OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-30
Identity = 60/83 (72.29%), Postives = 73/83 (87.95%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          M KRL+P  NR+L++ ++ P KT SGILLPEK+SKLNSGKVIAVGPG+RD++GK+IP+SV
Sbjct: 1  MMKRLIPTFNRILVQGVIQPAKTESGILLPEKASKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQY 84
          KEGD VLLPEYGG +VKLGEK+Y
Sbjct: 61 KEGDTVLLPEYGGTQVKLGEKEY 83

[Close]

BLAST of MELO3C019112T1 vs. Swiss-Prot
Match: CH10_SCHPO (10 kDa heat shock protein, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hsp10 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-18
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 2  AKRLLPLLNRVLIEKIVPPTKTNSGILLPEKS-SKLNSGKVIAVGPGARDREGKIIPISV 61
          AK ++PLL+R+L+++I   TKT SGI LPEKS  KL+ G+VI+VG G  ++EGK+   SV
Sbjct: 8  AKSIVPLLDRILVQRIKADTKTASGIFLPEKSVEKLSEGRVISVGKGGYNKEGKLAQPSV 67

Query: 62 KEGDIVLLPEYGGNEVKLGEKQY 84
            GD VLLP YGG+ +K+GE++Y
Sbjct: 68 AVGDRVLLPAYGGSNIKVGEEEY 90

[Close]

BLAST of MELO3C019112T1 vs. Swiss-Prot
Match: CH10_ORYLA (10 kDa heat shock protein, mitochondrial OS=Oryzias latipes GN=hspe1 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.7e-16
Identity = 42/86 (48.84%), Postives = 62/86 (72.09%), Query Frame = 1


Query: 3  KRLLPLLNRVLIEKIVPPTKTNSGILLPEKSS-KLNSGKVIAVGPGARDREGKIIPISVK 62
          ++ LPL +RVL+E+++  T T  GI+LPEKS  K+    V+AVGPG+ +++G++ P+SVK
Sbjct: 4  RKFLPLFDRVLVERLMAETVTKGGIMLPEKSQGKVLQATVVAVGPGSMNQKGEVQPMSVK 63

Query: 63 EGDIVLLPEYGGNEVKLGEKQYVYLF 88
           G+ VLLP+YGG +V L +K Y +LF
Sbjct: 64 VGEKVLLPQYGGTKVVLEDKDY-FLF 88

[Close]

BLAST of MELO3C019112T1 vs. Swiss-Prot
Match: CH10_YEAST (10 kDa heat shock protein, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSP10 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-15
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 2  AKRLLPLLNRVLIEKIVPPTKTNSGILLPEKS-SKLNSGKVIAVGPGARDREGKIIPISV 61
          AK ++PL++RVL+++I    KT SG+ LPEK+  KLN  +V+AVGPG  D  G  +   V
Sbjct: 8  AKSIVPLMDRVLVQRIKAQAKTASGLYLPEKNVEKLNQAEVVAVGPGFTDANGNKVVPQV 67

Query: 62 KEGDIVLLPEYGGNEVKLGEKQYVYLF 88
          K GD VL+P++GG+ +KLG    V LF
Sbjct: 68 KVGDQVLIPQFGGSTIKLGNDDEVILF 94

[Close]

BLAST of MELO3C019112T1 vs. TrEMBL
Match: A0A0A0KYT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G426760 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.2e-37
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKS+KLNSGKVIAVGPGARDREGKIIPISV
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQYVYLF 88
          KEGD+VLLPEYGGNEVKLGEKQ+ YLF
Sbjct: 61 KEGDMVLLPEYGGNEVKLGEKQF-YLF 86

[Close]

BLAST of MELO3C019112T1 vs. TrEMBL
Match: M0TSH4_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-32
Identity = 68/83 (81.93%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+PL NRVL+EKIVPP+KT++GILLPEK++KLNSGKV+AVGPGARDR+GK+IP+SV
Sbjct: 1  MAKRLIPLFNRVLVEKIVPPSKTSAGILLPEKTTKLNSGKVVAVGPGARDRDGKLIPVSV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQY 84
          KEGD VLLPEYGG EVKLGEK+Y
Sbjct: 61 KEGDTVLLPEYGGTEVKLGEKEY 83

[Close]

BLAST of MELO3C019112T1 vs. TrEMBL
Match: A0A059D9Z0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03754 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.1e-32
Identity = 69/83 (83.13%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+P LNRVLIEKIVPP+KTN+GILLPEK++KLNSGKV+AVGPGARD++GKIIP+SV
Sbjct: 1  MAKRLIPTLNRVLIEKIVPPSKTNTGILLPEKTTKLNSGKVMAVGPGARDKDGKIIPVSV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQY 84
          KEG+ VLLPEYGG EVKLGEK+Y
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKEY 83

[Close]

BLAST of MELO3C019112T1 vs. TrEMBL
Match: A0A103XSU5_CYNCS (Chaperonin Cpn10 OS=Cynara cardunculus var. scolymus GN=Ccrd_001673 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.1e-32
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+P LNRVL+EKIVPP+KT +GILLPEKSSKLNSGKV+AVGPG RD  G  IP++V
Sbjct: 1  MAKRLIPCLNRVLVEKIVPPSKTTAGILLPEKSSKLNSGKVVAVGPGTRDNSGNTIPVAV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQYVYLFYCLLYL 94
          KEGD VLLPEYGG EVKLGEK+YV+  +  LY+
Sbjct: 61 KEGDTVLLPEYGGMEVKLGEKEYVFPLFSYLYM 93

[Close]

BLAST of MELO3C019112T1 vs. TrEMBL
Match: D7T1A7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g02550 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.0e-32
Identity = 65/83 (78.31%), Postives = 81/83 (97.59%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+P LNR+L+EKIVPP+KTN+GILLPEK+++LNSGKV+AVGPGARDR+GK+IP+SV
Sbjct: 1  MAKRLIPTLNRILVEKIVPPSKTNAGILLPEKTAQLNSGKVVAVGPGARDRDGKLIPLSV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQY 84
          +EGD VLLPEYGGN+VKLG+K+Y
Sbjct: 61 REGDTVLLPEYGGNQVKLGDKEY 83

[Close]

BLAST of MELO3C019112T1 vs. TAIR10
Match: AT1G23100.1 (AT1G23100.1 GroES-like family protein)

HSP 1 Score: 136.7 bits (343), Expect = 7.4e-33
Identity = 65/84 (77.38%), Postives = 76/84 (90.48%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+P LNRVL+EKI+PP+KT SGILLPEKSS+LNSG+VIAVGPGARDR G +IP+SV
Sbjct: 1  MAKRLIPTLNRVLVEKILPPSKTVSGILLPEKSSQLNSGRVIAVGPGARDRAGNLIPVSV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQYV 85
          KEGD VLLPE+GG +VKLGEK+++
Sbjct: 61 KEGDNVLLPEFGGTQVKLGEKEFL 84

[Close]

BLAST of MELO3C019112T1 vs. TAIR10
Match: AT1G14980.1 (AT1G14980.1 chaperonin 10)

HSP 1 Score: 133.7 bits (335), Expect = 6.2e-32
Identity = 60/83 (72.29%), Postives = 72/83 (86.75%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          M KRL+P  NR+L+++++ P KT SGILLPEKSSKLNSGKVIAVGPG+RD++GK+IP+SV
Sbjct: 1  MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQY 84
          KEGD VLLPEYGG +VKLGE +Y
Sbjct: 61 KEGDTVLLPEYGGTQVKLGENEY 83

[Close]

BLAST of MELO3C019112T1 vs. TAIR10
Match: AT5G20720.1 (AT5G20720.1 chaperonin 20)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-10
Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 1


Query: 3   KRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNS-GKVIAVGPGARDREGKIIPISVK 62
           K L PL +RV I+      KT  G+LL E + +  S G VIAVGPG+ D EGKI P+ V 
Sbjct: 158 KDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVS 217

Query: 63  EGDIVLLPEYGGNEVK 78
            G  VL  +Y GN+ K
Sbjct: 218 TGSTVLYSKYAGNDFK 233

[Close]

BLAST of MELO3C019112T1 vs. NCBI nr
Match: gi|659111415|ref|XP_008455733.1| (PREDICTED: 10 kDa chaperonin-like [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 9.4e-38
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQYVYLF 88
          KEGDIVLLPEYGGNEVKLGEKQ+ YLF
Sbjct: 61 KEGDIVLLPEYGGNEVKLGEKQF-YLF 86

[Close]

BLAST of MELO3C019112T1 vs. NCBI nr
Match: gi|449453157|ref|XP_004144325.1| (PREDICTED: 10 kDa chaperonin-like [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 4.6e-37
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKS+KLNSGKVIAVGPGARDREGKIIPISV
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQYVYLF 88
          KEGD+VLLPEYGGNEVKLGEKQ+ YLF
Sbjct: 61 KEGDMVLLPEYGGNEVKLGEKQF-YLF 86

[Close]

BLAST of MELO3C019112T1 vs. NCBI nr
Match: gi|743785975|ref|XP_010922052.1| (PREDICTED: 10 kDa chaperonin-like isoform X1 [Elaeis guineensis])

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-32
Identity = 67/83 (80.72%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+P LNRVL+EKIVPP+KTNSGILLPEK++KLNSGKV+AVGPGARDR+G ++P+SV
Sbjct: 1  MAKRLIPCLNRVLVEKIVPPSKTNSGILLPEKTTKLNSGKVVAVGPGARDRDGNLVPVSV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQY 84
          KEGD+VLLPEYGG EVKLG+K+Y
Sbjct: 61 KEGDVVLLPEYGGTEVKLGDKEY 83

[Close]

BLAST of MELO3C019112T1 vs. NCBI nr
Match: gi|695052315|ref|XP_009414211.1| (PREDICTED: 10 kDa chaperonin-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 146.4 bits (368), Expect = 2.6e-32
Identity = 68/83 (81.93%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+PL NRVL+EKIVPP+KT++GILLPEK++KLNSGKV+AVGPGARDR+GK+IP+SV
Sbjct: 1  MAKRLIPLFNRVLVEKIVPPSKTSAGILLPEKTTKLNSGKVVAVGPGARDRDGKLIPVSV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQY 84
          KEGD VLLPEYGG EVKLGEK+Y
Sbjct: 61 KEGDTVLLPEYGGTEVKLGEKEY 83

[Close]

BLAST of MELO3C019112T1 vs. NCBI nr
Match: gi|976909061|gb|KVH96244.1| (Chaperonin Cpn10 [Cynara cardunculus var. scolymus])

HSP 1 Score: 145.6 bits (366), Expect = 4.5e-32
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+P LNRVL+EKIVPP+KT +GILLPEKSSKLNSGKV+AVGPG RD  G  IP++V
Sbjct: 1  MAKRLIPCLNRVLVEKIVPPSKTTAGILLPEKSSKLNSGKVVAVGPGTRDNSGNTIPVAV 60

Query: 61 KEGDIVLLPEYGGNEVKLGEKQYVYLFYCLLYL 94
          KEGD VLLPEYGG EVKLGEK+YV+  +  LY+
Sbjct: 61 KEGDTVLLPEYGGMEVKLGEKEYVFPLFSYLYM 93

The following BLAST results are available for this feature:

BLAST of MELO3C019112T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CH10_ARATH	1.1e-30	72.29	10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=3 SV=1	[more]
CH10_BRANA	1.9e-30	72.29	10 kDa chaperonin OS=Brassica napus PE=3 SV=1	[more]
CH10_SCHPO	8.2e-18	54.22	10 kDa heat shock protein, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
CH10_ORYLA	7.7e-16	48.84	10 kDa heat shock protein, mitochondrial OS=Oryzias latipes GN=hspe1 PE=3 SV=1	[more]
CH10_YEAST	1.3e-15	48.28	10 kDa heat shock protein, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of MELO3C019112T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYT6_CUCSA	3.2e-37	95.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G426760 PE=3 SV=1	[more]
M0TSH4_MUSAM	1.8e-32	81.93	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]
A0A059D9Z0_EUCGR	3.1e-32	83.13	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03754 PE=3 SV=1	[more]
A0A103XSU5_CYNCS	3.1e-32	74.19	Chaperonin Cpn10 OS=Cynara cardunculus var. scolymus GN=Ccrd_001673 PE=3 SV=1	[more]
D7T1A7_VITVI	7.0e-32	78.31	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g02550 PE=3 SV=...	[more]

BLAST of MELO3C019112T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23100.1	7.4e-33	77.38	GroES-like family protein	[more]
AT1G14980.1	6.2e-32	72.29	chaperonin 10	[more]
AT5G20720.1	2.3e-10	47.37	chaperonin 20	[more]

BLAST of MELO3C019112T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111415\|ref\|XP_008455733.1\|	9.4e-38	97.70	PREDICTED: 10 kDa chaperonin-like [Cucumis melo]	[more]
gi\|449453157\|ref\|XP_004144325.1\|	4.6e-37	95.40	PREDICTED: 10 kDa chaperonin-like [Cucumis sativus]	[more]
gi\|743785975\|ref\|XP_010922052.1\|	1.5e-32	80.72	PREDICTED: 10 kDa chaperonin-like isoform X1 [Elaeis guineensis]	[more]
gi\|695052315\|ref\|XP_009414211.1\|	2.6e-32	81.93	PREDICTED: 10 kDa chaperonin-like [Musa acuminata subsp. malaccensis]	[more]
gi\|976909061\|gb\|KVH96244.1\|	4.5e-32	74.19	Chaperonin Cpn10 [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011032	GroES-like_sf
IPR018369	Chaprnonin_Cpn10_CS
IPR020818	Chaperonin_GroES

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C019112	MELO3C019112	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C019112T1	MELO3C019112T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C019112T1.cds1	MELO3C019112T1.cds1	CDS
MELO3C019112T1.cds2	MELO3C019112T1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011032	GroES-like	unknown	SSF50129	GroES-like	coord: 4..85 score: 1.29
IPR018369	Chaperonin GroES, conserved site	PROSITE	PS00681	CHAPERONINS_CPN10	coord: 5..29 scor
IPR020818	GroES chaperonin family	PRINTS	PR00297	CHAPERONIN10	coord: 26..47 score: 2.8E-11coord: 5..20 score: 2.8E-11coord: 61..73 score: 2.8
IPR020818	GroES chaperonin family	GENE3D	G3DSA:2.30.33.40		coord: 4..85 score: 5.9
IPR020818	GroES chaperonin family	PANTHER	PTHR10772	10 KDA HEAT SHOCK PROTEIN	coord: 1..83 score: 6.1
IPR020818	GroES chaperonin family	PFAM	PF00166	Cpn10	coord: 6..86 score: 5.2
IPR020818	GroES chaperonin family	SMART	SM00883	Cpn10_2	coord: 4..85 score: 2.2
None	No IPR available	PANTHER	PTHR10772:SF8	10 KDA CHAPERONIN	coord: 1..83 score: 6.1