MELO3C018817.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018817.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	At5g54970
Location	chr01 : 3052295 .. 3052992 (+)
Sequence length	698

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTTCCCATTTTATTTTCCCTCCACCCCTTTCCCGCCTCTCCTCTCCCCTATCTCTCTCCATAAAATCCCCATTCTCCCTTCTCCATTTCATCTCATCTTCAATCCTCAATCCTCAATCCTCGTCTTCACCTTCTTCTTCCGTCTCTCGGACATCATGAATCGAAGATCCAGAAGATCGGGGAACTCTCAATCCGAGACGTTTCACAAGTATCTAAAGCCTGGTGCGCTAGCACAAATTCGGAATTCTCGGATGATCGCTCGATTCAATCGGGTTAATTTGGTATCTCAGATCTACTCCACTACTTCTTCCAGTCTACCGATCGACTCCGGTTTACTTCAGGTCAACATTGTTGATGCTTCTCCTTCCTTTGCTGGGAGGGTGTATGGCCCTCTCTCTTTGCAGAGGAAGAAACTTTTGGCTTCCAAGTCTTTGTGGTTTCTCGCTTCTAGCCCTACTAATCTCACACCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGAATTGTATAAGTCTTTTTCTATGGAATACTTTCAACCTGTGAATCGAGTCTTTCTTTGTGAAATTAAATATCAAACTGTAATACATGATACCTTTTGTAGGTAGTGTTGACGATGGGTTGTGAATTTTATTCTTCTTGATTTTGATCGGATTTAAATAATAAGATCTATCATATTATCGATCT

mRNA sequence

TCTCTCTTCCCATTTTATTTTCCCTCCACCCCTTTCCCGCCTCTCCTCTCCCCTATCTCTCTCCATAAAATCCCCATTCTCCCTTCTCCATTTCATCTCATCTTCAATCCTCAATCCTCAATCCTCGTCTTCACCTTCTTCTTCCGTCTCTCGGACATCATGAATCGAAGATCCAGAAGATCGGGGAACTCTCAATCCGAGACGTTTCACAAGTATCTAAAGCCTGGTGCGCTAGCACAAATTCGGAATTCTCGGATGATCGCTCGATTCAATCGGGTTAATTTGGTATCTCAGATCTACTCCACTACTTCTTCCAGTCTACCGATCGACTCCGGTTTACTTCAGGTCAACATTGTTGATGCTTCTCCTTCCTTTGCTGGGAGGGTGTATGGCCCTCTCTCTTTGCAGAGGAAGAAACTTTTGGCTTCCAAGTCTTTGTGGTTTCTCGCTTCTAGCCCTACTAATCTCACACCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGAATTGTATAAGTCTTTTTCTATGGAATACTTTCAACCTGTGAATCGAGTCTTTCTTTGTGAAATTAAATATCAAACTGTAATACATGATACCTTTTGTAGGTAGTGTTGACGATGGGTTGTGAATTTTATTCTTCTTGATTTTGATCGGATTTAAATAATAAGATCTATCATATTATCGATCT

Coding sequence (CDS)

TCTCTCTTCCCATTTTATTTTCCCTCCACCCCTTTCCCGCCTCTCCTCTCCCCTATCTCTCTCCATAAAATCCCCATTCTCCCTTCTCCATTTCATCTCATCTTCAATCCTCAATCCTCAATCCTCGTCTTCACCTTCTTCTTCCGTCTCTCGGACATCATGAATCGAAGATCCAGAAGATCGGGGAACTCTCAATCCGAGACGTTTCACAAGTATCTAAAGCCTGGTGCGCTAGCACAAATTCGGAATTCTCGGATGATCGCTCGATTCAATCGGGTTAATTTGGTATCTCAGATCTACTCCACTACTTCTTCCAGTCTACCGATCGACTCCGGTTTACTTCAGGTCAACATTGTTGATGCTTCTCCTTCCTTTGCTGGGAGGGTGTATGGCCCTCTCTCTTTGCAGAGGAAGAAACTTTTGGCTTCCAAGTCTTTGTGGTTTCTCGCTTCTAGCCCTACTAATCTCACACCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGA

Protein sequence

SLFPFYFPSTPFPPLLSPISLHKIPILPSPFHLIFNPQSSILVFTFFFRLSDIMNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG

Homology

[Close]

BLAST of MELO3C018817.2.1 vs. NCBI nr
Match: XP_008455441.1 (PREDICTED: uncharacterized protein LOC103495597 [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 2.8e-57
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 54  MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 113
           MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL
Sbjct: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 60

Query: 114 LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 172
           LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG
Sbjct: 61  LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 118

[Close]

BLAST of MELO3C018817.2.1 vs. NCBI nr
Match: XP_004144589.1 (PREDICTED: uncharacterized protein LOC101204134 [Cucumis sativus] >KGN43519.1 hypothetical protein Csa_7G043610 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 5.5e-53
Identity = 113/118 (95.76%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 54  MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 113
           MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS   SSLPIDS L
Sbjct: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS-APSSLPIDSAL 60

Query: 114 LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 172
           LQVNIVDASPSFAGR YGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG
Sbjct: 61  LQVNIVDASPSFAGRAYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 117

[Close]

BLAST of MELO3C018817.2.1 vs. NCBI nr
Match: XP_022952539.1 (uncharacterized protein LOC111455201 [Cucurbita moschata])

HSP 1 Score: 204.1 bits (518), Expect = 3.7e-49
Identity = 110/124 (88.71%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 54  MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSL-----P 113
           MNRRSRRSGNS SETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYST SSSL     P
Sbjct: 1   MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAP 60

Query: 114 IDSGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASK-SLWFLASSPTNLTPDSPPDPVIE 172
           I SGLLQVNI DASP FAGRVYGPL LQRKKLLA+K SLWFLASSPTNLTPDSPPDPVI 
Sbjct: 61  IGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLWFLASSPTNLTPDSPPDPVIG 120

[Close]

BLAST of MELO3C018817.2.1 vs. NCBI nr
Match: XP_023530330.1 (uncharacterized protein LOC111792933 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 109/126 (86.51%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 54  MNRRSR---RSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSL--- 113
           MNRRSR   RS  S SETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYST SSSL   
Sbjct: 1   MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60

Query: 114 --PIDSGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPV 172
             PIDS LLQVNIVDASP FAGRVYGPL LQRKKLLA+KSLWFL+SSPTNLTPDSPPDPV
Sbjct: 61  TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSSPTNLTPDSPPDPV 120

[Close]

BLAST of MELO3C018817.2.1 vs. NCBI nr
Match: XP_022930695.1 (uncharacterized protein LOC111437092 [Cucurbita moschata])

HSP 1 Score: 199.9 bits (507), Expect = 7.0e-48
Identity = 108/126 (85.71%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 54  MNRRSR---RSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSL--- 113
           MNRRSR   RS  S SETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYST  SSL   
Sbjct: 1   MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPP 60

Query: 114 --PIDSGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPV 172
             PIDS LLQVNIVDASP FAGRVYGPL LQRKKLLA+KSLWFL+SSPTNLTPDSPPDPV
Sbjct: 61  TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSSPTNLTPDSPPDPV 120

[Close]

BLAST of MELO3C018817.2.1 vs. TAIR10
Match: AT5G54970.1 (unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-09
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 50  LSDIMNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQI--------YS 109
           + DI    +RR     S+ FH+YLKPGALAQIRNSR+ AR +  +LVS+          S
Sbjct: 1   MKDISKSPARR-----SDGFHRYLKPGALAQIRNSRINAR-STTSLVSRSSLSQLVDPIS 60

Query: 110 TTSSSLPIDSGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASKSL 147
            + +S+   +   +   +D  P    ++YGP S QRKKL A++S+
Sbjct: 61  PSENSVDEAAAASRNLTIDQVPHLLRKIYGPYSYQRKKLAAARSV 99

[Close]

BLAST of MELO3C018817.2.1 vs. TAIR10
Match: AT4G26960.1 (unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 4.3e-07
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 60  RSGNSQSETFHKYLKPGALAQIRNSRM-IARFN---RVNLVSQIYSTTSSSLPIDSGLLQ 119
           RS   +++ FH+Y+KPGALAQIRN+R+  AR N     +L   +   +SSS    +   Q
Sbjct: 35  RSPVRRNDGFHRYMKPGALAQIRNARINNARSNFPLTRSLSDPVDPPSSSSESPIAATPQ 94

Query: 120 VNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 172
              +D  P    ++YGP  + RKKL  ++      S+   L P   P+ ++E + G
Sbjct: 95  TITMDQMPHLLSKIYGPYRIGRKKLGPAR------SAMVKLNPS--PNSILESING 142

[Close]

BLAST of MELO3C018817.2.1 vs. TrEMBL
Match: tr|A0A1S3C0X0|A0A1S3C0X0_CUCME (uncharacterized protein LOC103495597 OS=Cucumis melo OX=3656 GN=LOC103495597 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.9e-57
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 54  MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 113
           MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL
Sbjct: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 60

Query: 114 LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 172
           LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG
Sbjct: 61  LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 118

[Close]

BLAST of MELO3C018817.2.1 vs. TrEMBL
Match: tr|A0A0A0K3K2|A0A0A0K3K2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G043610 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 3.6e-53
Identity = 113/118 (95.76%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 54  MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 113
           MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS   SSLPIDS L
Sbjct: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS-APSSLPIDSAL 60

Query: 114 LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 172
           LQVNIVDASPSFAGR YGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG
Sbjct: 61  LQVNIVDASPSFAGRAYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 117

[Close]

BLAST of MELO3C018817.2.1 vs. TrEMBL
Match: tr|A0A251Q3Q6|A0A251Q3Q6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G217200 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.0e-19
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 0


Query: 54  MNRRS-----RRSGNSQSETFHKYLKPGALAQIRNSRM-IARFNRVNLVSQIYSTTSSSL 113
           MNRRS     R S N  +E F KYLKPGALAQIR+SR+  AR +R+N +SQI ++  SS 
Sbjct: 1   MNRRSRTLHRRSSQNRSTEPFLKYLKPGALAQIRDSRISSARSHRLNWLSQICTSPPSSP 60

Query: 114 PIDSGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIE 169
             D+GL QVN +D  P F+GR+YGP   QRKKL ASKS+ FL  +P++   DS PDP+I+
Sbjct: 61  ANDAGLPQVNAIDGFPCFSGRIYGPRCPQRKKLAASKSVLFL--NPSSPVHDS-PDPIID 118

[Close]

BLAST of MELO3C018817.2.1 vs. TrEMBL
Match: tr|A0A2P6S2A0|A0A2P6S2A0_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0159281 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.9e-18
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 54  MNRRSR---RSGNSQSETFHKYLKPGALAQIRNSRM-IARFNRVNLVSQIYSTTSSSLPI 113
           MNRR+R   RS  ++SE F KYLKPGALAQIR+SR+  +R +R+N +SQI ST   S   
Sbjct: 1   MNRRARTTHRSSPNRSEPFLKYLKPGALAQIRDSRISSSRSHRINWISQIRSTPPMSPSA 60

Query: 114 DSGLLQVNI-VDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEV 169
           DSGL Q+ +  D  P F+GR+YGP   QRKKL+A KS+ FL   P++   DS PDP+I++
Sbjct: 61  DSGLPQITVAADGFPCFSGRIYGPRCPQRKKLVAGKSVMFL--RPSSPVSDS-PDPIIDL 117

[Close]

BLAST of MELO3C018817.2.1 vs. TrEMBL
Match: tr|A5C5X4|A5C5X4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_041943 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.5e-18
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 0


Query: 54  MNRRSR---RSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPID 113
           MNRR R   RS + + E FH+YLKPGALAQ+R+SR+ AR +RV+  SQI+   +SS P  
Sbjct: 1   MNRRIRXLHRSSSKRDEAFHRYLKPGALAQLRDSRISARSHRVDSHSQIHLHRTSSPPSS 60

Query: 114 SGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLG 171
               Q   +DA P FAGR YGP  LQRKKL+A+KS++  +SSP +   +SP   V+++ G
Sbjct: 61  PLPPQ---IDAFPCFAGRNYGPRCLQRKKLVAAKSVFLKSSSPASPMSESPDSVVVDLFG 117

The following BLAST results are available for this feature:

BLAST of MELO3C018817.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455441.1	2.8e-57	100.00	PREDICTED: uncharacterized protein LOC103495597 [Cucumis melo]	[more]
XP_004144589.1	5.5e-53	95.76	PREDICTED: uncharacterized protein LOC101204134 [Cucumis sativus] >KGN43519.1 hy...	[more]
XP_022952539.1	3.7e-49	88.71	uncharacterized protein LOC111455201 [Cucurbita moschata]	[more]
XP_023530330.1	1.4e-48	86.51	uncharacterized protein LOC111792933 [Cucurbita pepo subsp. pepo]	[more]
XP_022930695.1	7.0e-48	85.71	uncharacterized protein LOC111437092 [Cucurbita moschata]	[more]

BLAST of MELO3C018817.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54970.1	1.6e-09	39.05	unknown protein	[more]
AT4G26960.1	4.3e-07	33.62	unknown protein	[more]

BLAST of MELO3C018817.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C018817.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0X0\|A0A1S3C0X0_CUCME	1.9e-57	100.00	uncharacterized protein LOC103495597 OS=Cucumis melo OX=3656 GN=LOC103495597 PE=...	[more]
tr\|A0A0A0K3K2\|A0A0A0K3K2_CUCSA	3.6e-53	95.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G043610 PE=4 SV=1	[more]
tr\|A0A251Q3Q6\|A0A251Q3Q6_PRUPE	2.0e-19	54.55	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G217200 PE=4 SV=1	[more]
tr\|A0A2P6S2A0\|A0A2P6S2A0_ROSCH	2.9e-18	52.50	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0159281 PE=4...	[more]
tr\|A5C5X4\|A5C5X4_VITVI	6.5e-18	49.17	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_041943 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018817.2	MELO3C018817.2	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018817.2.1.exon.1	MELO3C018817.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018817.2.1.CDS.1	MELO3C018817.2.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018817.2.1.three_prime_UTR.1	MELO3C018817.2.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C018817.2.1	MELO3C018817.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35495	FAMILY NOT NAMED	coord: 56..161
None	No IPR available	PANTHER	PTHR35495:SF1	SUBFAMILY NOT NAMED	coord: 56..161