MELO3C018294T1 (mRNA) Melon (DHL92) v3.5.1

NameMELO3C018294T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein
Locationchr10 : 19974300 .. 19974467 (-)
Sequence length168
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGACGACGTTGACGACGAGGACGAGGGGGACTCTACATACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCACGACGACCTAGTCGAATCGATGTTCACCGAATGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGACGACGTTGACGACGAGGACGAGGGGGACTCTACATACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCACGACGACCTAGTCGAATCGATGTTCACCGAATGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGACGACGTTGACGACGAGGACGAGGGGGACTCTACATACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCACGACGACCTAGTCGAATCGATGTTCACCGAATGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLVESMFTEWQLRNA*
BLAST of MELO3C018294T1 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-20
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 1

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLVESMFTEWQLR 54
           MTYC+DV+DEDEGDSTYATTTASEDIQYIETTNEWSQW DDL  SMFT+WQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C018294T1 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-06
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLVESMFT 49
           MT  D  D+ DE DST+ATT A++DI YIET+NEWSQW D+L E + T
Sbjct: 311 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDNLAEEIMT 357

BLAST of MELO3C018294T1 vs. TrEMBL
Match: A0A0A0M0G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.6e-06
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 1

Query: 9  DEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLVESMFTEWQLRN 55
          D DE D  YATT  + +I Y E +N+WSQW DDLVE+MF  WQL N
Sbjct: 22 DVDEVDLNYATTEGN-NINYNEASNKWSQWRDDLVEAMFNGWQLCN 66

BLAST of MELO3C018294T1 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 105.5 bits (262), Expect = 3.0e-20
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 1

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLVESMFTEWQLR 54
           MTYC+DV+DEDEGDSTYATTTASEDIQYIETTNEWSQW DDL  SMFT+WQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C018294T1 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 8.2e-18
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 1

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLVESMFTEWQLRNA 56
           MTYCDDVDD DEGD  YATTT  E+I YIE TNEWSQW D L ESMFT+WQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

BLAST of MELO3C018294T1 vs. NCBI nr
Match: gi|659086609|ref|XP_008444024.1| (PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-12
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 1

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLVESMFTEWQLRN 55
           +TY +++DDED+GDST+ATT+  +DI YIE +NEW++W D L  SMFTEWQLRN
Sbjct: 241 ITYINELDDEDDGDSTHATTSG-DDITYIEPSNEWTEWRDALASSMFTEWQLRN 293

BLAST of MELO3C018294T1 vs. NCBI nr
Match: gi|659126170|ref|XP_008463047.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 8.8e-12
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLVESMFTE 50
           MT CDD+DD DEG+S Y  T A EDI+YIETTNEWSQW+D L E++F E
Sbjct: 203 MTNCDDIDDVDEGNSAYTKTIAIEDIKYIETTNEWSQWYDKLAEALFIE 251

BLAST of MELO3C018294T1 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-11
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLVESMFTEWQLRN 55
           MT  D  D+ DE DST+ATT A++DI YIET+NEWSQW DDL E MFT+W+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME2.1e-2086.79Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME2.3e-0660.42Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0M0G4_CUCSA8.6e-0658.70Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307135889|gb|ADN33754.1|3.0e-2086.79retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659099182|ref|XP_008450472.1|8.2e-1878.18PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|659086609|ref|XP_008444024.1|2.3e-1262.96PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo][more]
gi|659126170|ref|XP_008463047.1|8.8e-1267.35PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659121362|ref|XP_008460622.1|2.0e-1166.67PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C018294MELO3C018294gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C018294T1MELO3C018294T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C018294T1.cds1MELO3C018294T1.cds1CDS