MELO3C018079T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018079T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
Location	chr4 : 11061106 .. 11061315 (-)
Sequence length	210

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCCAAGCCGAAGGCCTACAAGATGATGAGTGAGAGTAGTTCCACGACGTCATGTTCTCACTCAGCCACCGAAAGAGAGATTCAAATACAAGCTAAACTTGATCAATCTTTGAAACAAATTGAATTGCAAGATAGAAATTACCAAGCGTTAGTTTCAAAAATGGAACAAATGCAAAAGCTGATACAGGACATGACTCGGGCATAA

mRNA sequence

ATGGCACCCAAGCCGAAGGCCTACAAGATGATGAGTGAGAGTAGTTCCACGACGTCATGTTCTCACTCAGCCACCGAAAGAGAGATTCAAATACAAGCTAAACTTGATCAATCTTTGAAACAAATTGAATTGCAAGATAGAAATTACCAAGCGTTAGTTTCAAAAATGGAACAAATGCAAAAGCTGATACAGGACATGACTCGGGCATAA

Coding sequence (CDS)

ATGGCACCCAAGCCGAAGGCCTACAAGATGATGAGTGAGAGTAGTTCCACGACGTCATGTTCTCACTCAGCCACCGAAAGAGAGATTCAAATACAAGCTAAACTTGATCAATCTTTGAAACAAATTGAATTGCAAGATAGAAATTACCAAGCGTTAGTTTCAAAAATGGAACAAATGCAAAAGCTGATACAGGACATGACTCGGGCATAA

Protein sequence

MAPKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQKLIQDMTRA*

Homology

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BLAST of MELO3C018079T1 vs. NCBI nr
Match: gi|659071971|ref|XP_008462851.1| (PREDICTED: uncharacterized protein LOC103501125 isoform X2 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 8.1e-07
Identity = 30/59 (50.85%), Postives = 48/59 (81.36%), Query Frame = 1


Query: 3  PKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQK 62
          PKPKA +  S +SS+TS S S  ++EI++QAKL ++L++IE+QDRN+QAL S++E +++
Sbjct: 40 PKPKARRTSSANSSSTSSSQS-NQKEIELQAKLHEALERIEVQDRNHQALASQVEAIKR 97

The following BLAST results are available for this feature:

BLAST of MELO3C018079T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071971\|ref\|XP_008462851.1\|	8.1e-07	50.85	PREDICTED: uncharacterized protein LOC103501125 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018079	MELO3C018079	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C018079T1	MELO3C018079T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018079T1.cds1	MELO3C018079T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 49..69 scor