MELO3C017065.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C017065.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionsplicing factor U2af small subunit B-like
Locationchr07 : 164831 .. 166542 (+)
Sequence length1712
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATAACAATATAATTAATTTTAAAAAAAAATGAAGACAATAAAAATAAAAATAACATGTCTGCTATGCGAAAACATAACCAAGACCTTTCCCAAGTTCTTCATTCTCGAATTACGTATCTGGGATCCATTCCTCCAATTTAGGGTTTTTTCTTCTGCTCTTCTACTTTTCTCCTGGAAGTTCTAATACAGCTATCGGTTCCGTTTTTCCTTTAAATTTCTAATTTGAATTCCACTTCTTCTTCGTCGAAATCCTTTCAACCAGCTCGACAATTGTTGCTGAAATCTCTCTCGTCTGATCTCAAATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCTTGCCGACATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTCCTCTTATCCAACATGTACCAGCGCCCCGACATGATCACCCCGGGCGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTTGAAGATTTCTACGAAGACATTTACGAGGAACTTGGCAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGCGATAATCTCGCCGACCACATGATTGGAAATGTCTACGTTCAGTTTAGGGAAGAGGACCAGGCTGCCGCCGCACTCCAAGCGTTGCAAGGGCGGTTTTACTCAGGTCGACCCATTATCGCAGATTTTTCTCCGGTAACTGATTTCCGCGAAGCCACGTGCCGCCAGTACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGAAGGAAGCTATTCGGTAGGTACCGGGGATATAGGCCCAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACAGAGAACGTGAGTATCGCGGAAATGGACGGAGCAAGGAGCGTCATGATAGGGATGGGGGAAGGAGAAGACATGGTAGCCCCAGACGAAGCCGAAGCAGAAGCCCCGTCATTGCGAGAGAAGGTAGCGAAGAGCGACGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGACGTCTTCGTATTTTTTTCTTTCTATTTTGGTAATTGTTCTGTGCTCTCTCTGTCATTTAATTATGTACCTTACCCTTACTCACACCACATATTTCTGCCTGAATAGGAAGTAGAAATCTTTTCTAGACAAAGCCGTGGATGTGATATCAAGTAGAGTAGCCTTTTTGGTTAACTTTCTAGACGATATTGTCGGATGTGATCTCTTAACTATTTCTATCTCCACTTCATCATCCATATGCTTTAACTTGTGCCTCATCTTACCCATTAAAACCCATCACTTCCTATCCACTCGCCTGCTTGAGCTTACGACCCAGGCATGAACAAGATGGGAAATTCATTGAGTGTGCTATGCAAATCGATGATTGTTGAATATGGCATCTATCTGTGTATTGCCTCGTTACTTCCATAGCTAACTAGTCTATTTGTACAACAGCAATGATTTGAGTCATTGTGTTAGTTATTATAGTTAATGAGCTACAGTAGCTTCGTGTGCAAACTATCTTAGGATAGTTATTATAATTCATGTTTGAGTTGCAAAATCATACACGGAAGCAGAGAGGGTATTTGAAATAGTAAT

mRNA sequence

TAATAACAATATAATTAATTTTAAAAAAAAATGAAGACAATAAAAATAAAAATAACATGTCTGCTATGCGAAAACATAACCAAGACCTTTCCCAAGTTCTTCATTCTCGAATTACGTATCTGGGATCCATTCCTCCAATTTAGGGTTTTTTCTTCTGCTCTTCTACTTTTCTCCTGGAAGTTCTAATACAGCTATCGGTTCCGTTTTTCCTTTAAATTTCTAATTTGAATTCCACTTCTTCTTCGTCGAAATCCTTTCAACCAGCTCGACAATTGTTGCTGAAATCTCTCTCGTCTGATCTCAAATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCTTGCCGACATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTCCTCTTATCCAACATGTACCAGCGCCCCGACATGATCACCCCGGGCGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTTGAAGATTTCTACGAAGACATTTACGAGGAACTTGGCAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGCGATAATCTCGCCGACCACATGATTGGAAATGTCTACGTTCAGTTTAGGGAAGAGGACCAGGCTGCCGCCGCACTCCAAGCGTTGCAAGGGCGGTTTTACTCAGGTCGACCCATTATCGCAGATTTTTCTCCGGTAACTGATTTCCGCGAAGCCACGTGCCGCCAGTACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGAAGGAAGCTATTCGGTAGGTACCGGGGATATAGGCCCAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACAGAGAACGTGAGTATCGCGGAAATGGACGGAGCAAGGAGCGTCATGATAGGGATGGGGGAAGGAGAAGACATGGTAGCCCCAGACGAAGCCGAAGCAGAAGCCCCGTCATTGCGAGAGAAGGTAGCGAAGAGCGACGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGACGTCTTCGTATTTTTTTCTTTCTATTTTGGTAATTGTTCTGTGCTCTCTCTGTCATTTAATTATGTACCTTACCCTTACTCACACCACATATTTCTGCCTGAATAGGAAGTAGAAATCTTTTCTAGACAAAGCCGTGGATGTGATATCAAGTAGAGTAGCCTTTTTGGTTAACTTTCTAGACGATATTGTCGGATGTGATCTCTTAACTATTTCTATCTCCACTTCATCATCCATATGCTTTAACTTGTGCCTCATCTTACCCATTAAAACCCATCACTTCCTATCCACTCGCCTGCTTGAGCTTACGACCCAGGCATGAACAAGATGGGAAATTCATTGAGTGTGCTATGCAAATCGATGATTGTTGAATATGGCATCTATCTGTGTATTGCCTCGTTACTTCCATAGCTAACTAGTCTATTTGTACAACAGCAATGATTTGAGTCATTGTGTTAGTTATTATAGTTAATGAGCTACAGTAGCTTCGTGTGCAAACTATCTTAGGATAGTTATTATAATTCATGTTTGAGTTGCAAAATCATACACGGAAGCAGAGAGGGTATTTGAAATAGTAAT

Coding sequence (CDS)

ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCTTGCCGACATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTCCTCTTATCCAACATGTACCAGCGCCCCGACATGATCACCCCGGGCGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTTGAAGATTTCTACGAAGACATTTACGAGGAACTTGGCAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGCGATAATCTCGCCGACCACATGATTGGAAATGTCTACGTTCAGTTTAGGGAAGAGGACCAGGCTGCCGCCGCACTCCAAGCGTTGCAAGGGCGGTTTTACTCAGGTCGACCCATTATCGCAGATTTTTCTCCGGTAACTGATTTCCGCGAAGCCACGTGCCGCCAGTACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGAAGGAAGCTATTCGGTAGGTACCGGGGATATAGGCCCAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACAGAGAACGTGAGTATCGCGGAAATGGACGGAGCAAGGAGCGTCATGATAGGGATGGGGGAAGGAGAAGACATGGTAGCCCCAGACGAAGCCGAAGCAGAAGCCCCGTCATTGCGAGAGAAGGTAGCGAAGAGCGACGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA

Protein sequence

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ
Homology
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BLAST of MELO3C017065.2.1 vs. NCBI nr
Match: XP_008453027.1 (PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo])

HSP 1 Score: 494.2 bits (1271), Expect = 2.9e-136
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRDGGRRRH 240
           RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRDGGRRRH
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRDGGRRRH 240

Query: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 276

[Close]
BLAST of MELO3C017065.2.1 vs. NCBI nr
Match: XP_004145565.1 (PREDICTED: splicing factor U2af small subunit B-like [Cucumis sativus] >KGN55547.1 hypothetical protein Csa_4G664540 [Cucumis sativus])

HSP 1 Score: 447.2 bits (1149), Expect = 4.0e-122
Identity = 258/276 (93.48%), Postives = 258/276 (93.48%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRDGGRRRH 240
           RRKLFGRYRGYR SRSRSRSLS XXXXXXXXXXXXXXXXXXXXX RS             
Sbjct: 181 RRKLFGRYRGYRASRSRSRSLSXXXXXXXXXXXXXXXXXXXXXXXRSXXXXXXXXXXXXX 240

Query: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
            SPRRSRSRSPVI REGSEERRARIEQWNREREEKQ
Sbjct: 241 XSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 276

[Close]
BLAST of MELO3C017065.2.1 vs. NCBI nr
Match: XP_022142994.1 (splicing factor U2af small subunit B-like [Momordica charantia])

HSP 1 Score: 425.6 bits (1093), Expect = 1.3e-115
Identity = 249/278 (89.57%), Postives = 250/278 (89.93%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKE---RHDRDGGR 240
           RRKLFGRYRGYR SRSR   LSPXXXXXXXXXXXXXXXXXXXX GRSKE   R+DRDGGR
Sbjct: 181 RRKLFGRYRGYRRSRSRXXXLSPXXXXXXXXXXXXXXXXXXXXNGRSKERYDRYDRDGGR 240

Query: 241 RRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEK 276
           R                    EERRARIEQWNREREEK
Sbjct: 241 R----XXXXXXXXXXXXXXXXEERRARIEQWNREREEK 274

[Close]
BLAST of MELO3C017065.2.1 vs. NCBI nr
Match: XP_022758326.1 (splicing factor U2af small subunit B-like isoform X2 [Durio zibethinus])

HSP 1 Score: 420.6 bits (1080), Expect = 4.1e-114
Identity = 237/280 (84.64%), Postives = 245/280 (87.50%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFED        L KFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK+IG++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKVIGREL 180

Query: 181 RRKLFGRYRGYR---PSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRD--G 240
           RRKLFGRYR YR              XXXXXXXXXXXXXXXXXXXX GR   R+DR+  G
Sbjct: 181 RRKLFGRYRRYRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGRRPGRYDRESGG 240

Query: 241 GRRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEK 276
           GRR+H SP   RSRSP +AREGSEERRARIEQWNREREEK
Sbjct: 241 GRRKHXSP--XRSRSPPLAREGSEERRARIEQWNREREEK 278

[Close]
BLAST of MELO3C017065.2.1 vs. NCBI nr
Match: XP_022758324.1 (splicing factor U2af small subunit B-like isoform X1 [Durio zibethinus] >XP_022758325.1 splicing factor U2af small subunit B-like isoform X1 [Durio zibethinus])

HSP 1 Score: 418.7 bits (1075), Expect = 1.5e-113
Identity = 236/280 (84.29%), Postives = 244/280 (87.14%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFED        L KFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK+IG++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKVIGREL 180

Query: 181 RRKLFGRYRGYR---PSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRD--G 240
           RRKLFGRYR YR              XXXXXXXXXXXXXXXXXXXX GR   R+DR+  G
Sbjct: 181 RRKLFGRYRRYRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGRRPGRYDRESGG 240

Query: 241 GRRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEK 276
           GRR+H  P   RSRSP +AREGSEERRARIEQWNREREEK
Sbjct: 241 GRRKHXXP--XRSRSPPLAREGSEERRARIEQWNREREEK 278

[Close]
BLAST of MELO3C017065.2.1 vs. TAIR10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative)

HSP 1 Score: 379.0 bits (972), Expect = 2.5e-105
Identity = 223/297 (75.08%), Postives = 234/297 (78.79%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHF  XXXXXXXX GKFGEIESLN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFXXXXXXXXXXXGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRDGGRRRH 240
           RRKLFGRY               XXXX     XXXXXXXXXXXX   ++R        RH
Sbjct: 181 RRKLFGRYXXXXXXXXXXXXXXXXXXXRNKRDXXXXXXXXXXXXXXXRDRE-----FYRH 240

Query: 241 GSPRR---------------------SRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           GS +R                      R  SP   REGSEERRARIEQWNREREEK+
Sbjct: 241 GSGKRXXXXXXXXXXXXXXXXXXXXXKRGGSPXXXREGSEERRARIEQWNREREEKE 292

[Close]
BLAST of MELO3C017065.2.1 vs. TAIR10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 348.6 bits (893), Expect = 3.5e-96
Identity = 214/281 (76.16%), Postives = 222/281 (79.00%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HF  XXXXXXXXL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFXXXXXXXXXXLNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRY-RGYR------PSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDR 240
           RRKLFGRY R YR                 XXXXXXXXXXXXXXXXXXXXX         
Sbjct: 181 RRKLFGRYRRSYRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 DGGRRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREE 275
                                 EGSEERRARIEQWNRER+E
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXEGSEERRARIEQWNRERDE 281

[Close]
BLAST of MELO3C017065.2.1 vs. TAIR10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-29
Identity = 63/167 (37.72%), Postives = 98/167 (58.68%), Query Frame = 0 

Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 296

Query: 69  IDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQA 128
               + +  +E+          K+GE+ +  VC N + H+ GNVYV +R  + A  A Q+
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH 173
           + GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401

[Close]
BLAST of MELO3C017065.2.1 vs. TAIR10
Match: AT3G44785.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 104.8 bits (260), Expect = 8.9e-23
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 0 

Query: 1  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
          M EHLASI+GTEKDRVNCPFYFKIG CR+GDRCSRL+ +P+ISPTLLLSN YQ+  +   
Sbjct: 1  MVEHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTYQQGRLKQF 60

Query: 61 GVDAQGQPIDPRK 74
              Q +  DP+K
Sbjct: 61 LDPVQSREKDPKK 73

[Close]
BLAST of MELO3C017065.2.1 vs. Swiss-Prot
Match: sp|Q9S709|U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 4.4e-104
Identity = 223/297 (75.08%), Postives = 234/297 (78.79%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHF  XXXXXXXX GKFGEIESLN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFXXXXXXXXXXXGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRDGGRRRH 240
           RRKLFGRY               XXXX     XXXXXXXXXXXX   ++R        RH
Sbjct: 181 RRKLFGRYXXXXXXXXXXXXXXXXXXXRNKRDXXXXXXXXXXXXXXXRDRE-----FYRH 240

Query: 241 GSPRR---------------------SRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           GS +R                      R  SP   REGSEERRARIEQWNREREEK+
Sbjct: 241 GSGKRXXXXXXXXXXXXXXXXXXXXXKRGGSPXXXREGSEERRARIEQWNREREEKE 292

[Close]
BLAST of MELO3C017065.2.1 vs. Swiss-Prot
Match: sp|Q9FMY5|U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 6.4e-95
Identity = 214/281 (76.16%), Postives = 222/281 (79.00%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HF  XXXXXXXXL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFXXXXXXXXXXLNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRY-RGYR------PSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDR 240
           RRKLFGRY R YR                 XXXXXXXXXXXXXXXXXXXXX         
Sbjct: 181 RRKLFGRYRRSYRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 DGGRRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREE 275
                                 EGSEERRARIEQWNRER+E
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXEGSEERRARIEQWNRERDE 281

[Close]
BLAST of MELO3C017065.2.1 vs. Swiss-Prot
Match: sp|Q9ZQW8|U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 4.1e-94
Identity = 200/295 (67.80%), Postives = 216/295 (73.22%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           G+DAQG PIDP KIQ  FED        L K+GEIESL+VCDN ADHMIGNVYVQFREED
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DL
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RRKLFGR---------------YRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXG 240
           R++LFG                                XXXXXX       XXXXXXXX 
Sbjct: 181 RKRLFGHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYYRGGSXXXXXXXXX 240

Query: 241 RSKERH----DRDGGRRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           RS ERH    D DG R         R+RSPV  R+GSEERRA+IEQWNRERE  Q
Sbjct: 241 RSSERHRSSYDSDGSR----XXXXXRTRSPV--RDGSEERRAQIEQWNREREAAQ 289

[Close]
BLAST of MELO3C017065.2.1 vs. Swiss-Prot
Match: sp|Q6AUG0|U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.4e-89
Identity = 211/310 (68.06%), Postives = 228/310 (73.55%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDP K+QEH   XXXXXXXX  KFGE+E+LNVCDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPEKMQEHXXXXXXXXXXXXSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++L
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRKLFGRYRGYRPSRS-----------------------------------RSRSLSPXX 240
           RRKL+G     R  RS                                          XX
Sbjct: 181 RRKLYGG----RSRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXGRSKERHDRDGGRRRHGSPRRSRSRSPVIAREGSEERRARI 276
           XXXXXXXXXXXXXXXXXXX                 SP R R+RSPV  RE SEERRA+I
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPPR-RARSPV--RESSEERRAKI 300

[Close]
BLAST of MELO3C017065.2.1 vs. Swiss-Prot
Match: sp|Q3T127|U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1L4 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.9e-62
Identity = 113/214 (52.80%), Postives = 149/214 (69.63%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P     
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXL-GKFGEIESLNVCDNLADHMIGNVYVQFREE 120
             D     +   ++QEH+++        L  K+GEIE +NVCDNL DH++GNVYV+FR E
Sbjct: 61  TADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKD 180
           + A  A+  L  R+++G+ + A+ SPVTDFRE+ CRQYE   C RGG+CNFMH++ I +D
Sbjct: 121 EDAERAVVELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRD 180

Query: 181 LRRKLFGR----------YRGYRPSRSRSRSLSP 204
           LRR+L+GR          + G+RP R R+R  SP
Sbjct: 181 LRRQLYGRGPRRRSPPRSHTGHRP-RERNRRRSP 213

[Close]
BLAST of MELO3C017065.2.1 vs. TrEMBL
Match: tr|A0A1S3BUN6|A0A1S3BUN6_CUCME (splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC103493856 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 1.9e-136
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRDGGRRRH 240
           RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRDGGRRRH
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRDGGRRRH 240

Query: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 276

[Close]
BLAST of MELO3C017065.2.1 vs. TrEMBL
Match: tr|A0A0A0L4P8|A0A0A0L4P8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664540 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 2.7e-122
Identity = 258/276 (93.48%), Postives = 258/276 (93.48%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRDGGRRRH 240
           RRKLFGRYRGYR SRSRSRSLS XXXXXXXXXXXXXXXXXXXXX RS             
Sbjct: 181 RRKLFGRYRGYRASRSRSRSLSXXXXXXXXXXXXXXXXXXXXXXXRSXXXXXXXXXXXXX 240

Query: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
            SPRRSRSRSPVI REGSEERRARIEQWNREREEKQ
Sbjct: 241 XSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 276

[Close]
BLAST of MELO3C017065.2.1 vs. TrEMBL
Match: tr|A0A2P2M1R7|A0A2P2M1R7_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 4.9e-116
Identity = 242/284 (85.21%), Postives = 250/284 (88.03%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFED        L KFGEIESLNVCDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIESLNVCDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQ+EENNCNRGGYCNFMHVK+IG++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGREL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXG--------RSKERHD 240
           RRKLFG YRGYR SR        XXXXXXXXXXXXXXXXXXXXX         RS +RH+
Sbjct: 181 RRKLFGSYRGYRVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGRRSGDRHE 240

Query: 241 RDGGRRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           RD GRRRHGSPR  RSRSP+  REGSEERRARIEQWNREREEKQ
Sbjct: 241 RDVGRRRHGSPR--RSRSPI--REGSEERRARIEQWNREREEKQ 280

[Close]
BLAST of MELO3C017065.2.1 vs. TrEMBL
Match: tr|A0A200PSA2|A0A200PSA2_9MAGN (RNA recognition motif domain OS=Macleaya cordata OX=56857 GN=BVC80_989g30 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 2.3e-113
Identity = 221/297 (74.41%), Postives = 231/297 (77.78%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLL SNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLFSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQPIDPRKIQEHFED        L KFGEIESLN+CDNLADHM+GNVYVQF+EED
Sbjct: 61  GVDPQGQPIDPRKIQEHFEDFYEDIFEELNKFGEIESLNICDNLADHMVGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPII DFSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIVDFSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKE----------- 240
           RRKL+GRYR    SRSRSRSLSP                   XX                
Sbjct: 181 RRKLYGRYRRSYGSRSRSRSLSPPRHRREMEKHSGEYRDRGDXXXXXXXXXXXXXXXXXX 240

Query: 241 -------RHDRDGGRRRHGSPRRSRS---RSPVIAREGSEERRARIEQWNREREEKQ 277
                  R+D DGGRRRHGSPRR+RS    SPV  REGSEERRARIEQWNREREEKQ
Sbjct: 241 XXXXXHGRYDSDGGRRRHGSPRRTRSPVRGSPV--REGSEERRARIEQWNREREEKQ 295

[Close]
BLAST of MELO3C017065.2.1 vs. TrEMBL
Match: tr|A0A061DX52|A0A061DX52_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_004219 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 3.9e-113
Identity = 232/279 (83.15%), Postives = 240/279 (86.02%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDXXXXXXXXLGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDP KIQEHFED        L KFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPHKIQEHFEDFYEDIFEELSKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQ+EENNCNRGGYCNFMHVK+IG++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKVIGREL 180

Query: 181 RRKLFGRYRGYRPS---RSRSRSLSPXXXXXXXXXXXXXXXXXXXXXGRSKERHDRD-GG 240
           RRKLFGRYR +R S            XXXXXXXXXXXXXXX      GR  +RHD D G 
Sbjct: 181 RRKLFGRYRKFRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXDYRDRNGRRPDRHDXDSGS 240

Query: 241 RRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEK 276
           RR+ GSPRRSRS +P  AREGSEERRARIEQWNREREEK
Sbjct: 241 RRKLGSPRRSRSPAPP-AREGSEERRARIEQWNREREEK 278

The following BLAST results are available for this feature:
BLAST of MELO3C017065.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008453027.12.9e-136100.00PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo][more]
XP_004145565.14.0e-12293.48PREDICTED: splicing factor U2af small subunit B-like [Cucumis sativus] >KGN55547... [more]
XP_022142994.11.3e-11589.57splicing factor U2af small subunit B-like [Momordica charantia][more]
XP_022758326.14.1e-11484.64splicing factor U2af small subunit B-like isoform X2 [Durio zibethinus][more]
XP_022758324.11.5e-11384.29splicing factor U2af small subunit B-like isoform X1 [Durio zibethinus] >XP_0227... [more]
BLAST of MELO3C017065.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G27650.12.5e-10575.08U2 snRNP auxiliary factor small subunit, putative[more]
AT5G42820.23.5e-9676.16Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G10320.11.7e-2937.72Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT3G44785.18.9e-2365.75Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
BLAST of MELO3C017065.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9S709|U2AFA_ARATH4.4e-10475.08Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A ... [more]
sp|Q9FMY5|U2AFB_ARATH6.4e-9576.16Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B ... [more]
sp|Q9ZQW8|U2AFA_ORYSJ4.1e-9467.80Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
sp|Q6AUG0|U2AFB_ORYSJ2.4e-8968.06Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
sp|Q3T127|U2AF4_BOVIN1.9e-6252.80Splicing factor U2AF 26 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1L4 PE=2 SV=1[more]
BLAST of MELO3C017065.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BUN6|A0A1S3BUN6_CUCME1.9e-136100.00splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC10349385... [more]
tr|A0A0A0L4P8|A0A0A0L4P8_CUCSA2.7e-12293.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664540 PE=4 SV=1[more]
tr|A0A2P2M1R7|A0A2P2M1R7_RHIMU4.9e-11685.21Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A200PSA2|A0A200PSA2_9MAGN2.3e-11374.41RNA recognition motif domain OS=Macleaya cordata OX=56857 GN=BVC80_989g30 PE=4 S... [more]
tr|A0A061DX52|A0A061DX52_THECC3.9e-11383.15Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1 OS=Theobroma cacao OX... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0089701U2AF
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000571Znf_CCCH
IPR003954RRM_dom_euk
IPR009145U2AF_small
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0089701 U2AF
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C017065.2MELO3C017065.2gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C017065.2.1.five_prime_UTR.1MELO3C017065.2.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C017065.2.1.exon.1MELO3C017065.2.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C017065.2.1.CDS.1MELO3C017065.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C017065.2.1.three_prime_UTR.1MELO3C017065.2.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C017065.2.1MELO3C017065.2.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 258..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 249..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..236
NoneNo IPR availablePANTHERPTHR12620:SF27SPLICING FACTOR U2AF SMALL SUBUNIT A-RELATEDcoord: 1..276
NoneNo IPR availableCDDcd12539RRM_U2AF35Bcoord: 44..145
e-value: 2.73453E-59
score: 185.26
IPR009145U2 auxiliary factor small subunitPRINTSPR01848U2AUXFACTORcoord: 165..177
score: 63.29
coord: 75..90
score: 54.26
coord: 103..125
score: 65.61
coord: 18..37
score: 85.68
coord: 37..57
score: 62.34
coord: 130..154
score: 63.64
IPR009145U2 auxiliary factor small subunitPANTHERPTHR12620U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITcoord: 1..276
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 73..142
e-value: 1.5E-4
score: 31.1
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 148..174
e-value: 0.0087
score: 25.3
coord: 13..39
e-value: 0.0068
score: 25.6
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 14..38
e-value: 2.6E-7
score: 30.3
coord: 150..174
e-value: 1.3E-4
score: 21.7
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 12..40
score: 13.065
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 148..175
score: 11.413
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 43..145
e-value: 9.1E-32
score: 111.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 83..139
e-value: 1.4E-7
score: 31.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 44..146
score: 11.059
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 77..149