MELO3C016998.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C016998.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr07 : 529583 .. 531193 (-)
Sequence length1158
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTTACTCTAACTCGAAGACAACCCCTCTATTTCCTTCTCCATCCCTCTTTTGAGTCCACCTCTCTTTCCTCTTCCTCCAAACACCCACGTCACTGGCGGCGACGCCTGCTGTTGCAGATCAGGCGGCGTGAACTGAGTCCGGCCGAGACGGTGGTTACCCAAACGGCAGTCACCTACCGGGAGCCCTGCAGCGAATTGTCAGCTTCGCAACCTCCGTGAACAGTCTGGTCATTTTTCCCATTTAAGGTGAGGTTTAATATTTTAGTCTTCGATTGATTTGTGTAAGAATTTTTTCGAAATTTGTTGTTTGGGATTTCAAATATTTTGTTTAAATAACCTTTGGAAGTAGAATAGTCTGCTGAGTGAAATGTTTTGTTTGGGTCTCAATAAAATAATTTGGAAGCAAAATTGTGTAGCAATGAAGGAAAACGGAGATGGATCAATGAAATCCATGAGTAAAGATGAAGAGAATGTGGTAGGTTACCACAGCAACAACGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCCGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTTCTTAAGCTCGATGGCACTGCCATTGGTACACACGTTTTCCTAATGTTCCCTTCTCTTTCTCTGTCTGGCATTTTCACAAACACCTTGTTATATGAACAACTGAAACTCAATTCACCATCTTGTTCTTTGTTTAGATGTGCTGATCATGAATTCTGCGACATTGAAAGACTTGAAGCTTGCAATCAAGCAGAAAGTAAACGAGACGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGTACTCTTTCTTGATAGCTCTCTAACCCAATCATTCAATGATCGCTGTTCATTGATTACAATTCCTTCGCTTTTGGATTTGCAGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCACAACGAGAAGATTCTTGATGATAGCTCAGTACTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTTGGATTTTTAGTAGAGTTGGAAGTATTTGAAATTTATCTGAGTTGAATCATTCAATCATTATATACAATGAACAAAAACTTGTTGCAGGTGCGTTTTATCCCATACGTTATGTCAAAGAACTCCAGAACACATTCTAGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGAGCTTCCAGATGCTTTGGAGGATGTTTCTCTTCAACACAAATTCAGTAAGCTTGAGTTCCATTACAATTTTTGTAACTGAATATGAACTTTAGATGAATGTGTTTATAGGAACTTGACCCTTCCATGTACATTTAACATTATGATATGTAAAAATGCAAACTAATATCTACATGATTAGCAAATTTTTGTTGTTTGTGGAAATTTGGTTAATTTAAGTGGAAAATTGAATCAAGCTATTCCTTCCCAACCCCAACAACAAAAGGATCTTTACTTTATCTCATAAACTTGTTCTCATTTAGCTGAATTGTTATGGATATTATTTATTTCTGATCCGTTGTTTCTAATAATCACTTCTTTGCTAC

mRNA sequence

TGTTTACTCTAACTCGAAGACAACCCCTCTATTTCCTTCTCCATCCCTCTTTTGAGTCCACCTCTCTTTCCTCTTCCTCCAAACACCCACGTCACTGGCGGCGACGCCTGCTGTTGCAGATCAGGCGGCGTGAACTGAGTCCGGCCGAGACGGTGGTTACCCAAACGGCAGTCACCTACCGGGAGCCCTGCAGCGAATTGTCAGCTTCGCAACCTCCGTGAACAGTCTGGTCATTTTTCCCATTTAAGCAATGAAGGAAAACGGAGATGGATCAATGAAATCCATGAGTAAAGATGAAGAGAATGTGGTAGGTTACCACAGCAACAACGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCCGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTTCTTAAGCTCGATGGCACTGCCATTGATGTGCTGATCATGAATTCTGCGACATTGAAAGACTTGAAGCTTGCAATCAAGCAGAAAGTAAACGAGACGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCACAACGAGAAGATTCTTGATGATAGCTCAGTACTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTGCGTTTTATCCCATACGTTATGTCAAAGAACTCCAGAACACATTCTAGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGAGCTTCCAGATGCTTTGGAGGATGTTTCTCTTCAACACAAATTCAGTAAGCTTGAGTTCCATTACAATTTTTGTAACTGAATATGAACTTTAGATGAATGTGTTTATAGGAACTTGACCCTTCCATGTACATTTAACATTATGATATGTAAAAATGCAAACTAATATCTACATGATTAGCAAATTTTTGTTGTTTGTGGAAATTTGGTTAATTTAAGTGGAAAATTGAATCAAGCTATTCCTTCCCAACCCCAACAACAAAAGGATCTTTACTTTATCTCATAAACTTGTTCTCATTTAGCTGAATTGTTATGGATATTATTTATTTCTGATCCGTTGTTTCTAATAATCACTTCTTTGCTAC

Coding sequence (CDS)

ATGATAGCTCAGTACTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTGCGTTTTATCCCATACGTTATGTCAAAGAACTCCAGAACACATTCTAGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGAGCTTCCAGATGCTTTGGAGGATGTTTCTCTTCAACACAAATTCAGTAAGCTTGAGTTCCATTACAATTTTTGTAACTGA

Protein sequence

MIAQYFRILESVTILRCVLSHTLCQRTPEHILGGENTDSFMVSTNVLELPDALEDVSLQHKFSKLEFHYNFCN
Homology
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BLAST of MELO3C016998.2.1 vs. NCBI nr
Match: XP_022975470.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X1 [Cucurbita maxima] >XP_022975473.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 33/55 (60.00%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 13  TILRCVLSHTLCQRTPEHILGGENTDSFMVSTNVLELPDALEDVSLQHKFSKLEF 68
           T  RC+LS   CQR PE IL GENT SF VSTN  E    L  + L+HKFSKLEF
Sbjct: 154 TCCRCILSRMSCQRIPEGILEGENTVSFTVSTNAHE--QTLRGMILKHKFSKLEF 206

The following BLAST results are available for this feature:
BLAST of MELO3C016998.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022975470.12.2e-0660.00U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X1 [Cucurbita max... [more]
BLAST of MELO3C016998.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C016998.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C016998.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C016998.2MELO3C016998.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C016998.2.1MELO3C016998.2.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016998.2.1.five_prime_UTR.4MELO3C016998.2.1.five_prime_UTR.4five_prime_UTR
MELO3C016998.2.1.five_prime_UTR.3MELO3C016998.2.1.five_prime_UTR.3five_prime_UTR
MELO3C016998.2.1.five_prime_UTR.2MELO3C016998.2.1.five_prime_UTR.2five_prime_UTR
MELO3C016998.2.1.five_prime_UTR.1MELO3C016998.2.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016998.2.1.exon.5MELO3C016998.2.1.exon.5exon
MELO3C016998.2.1.exon.4MELO3C016998.2.1.exon.4exon
MELO3C016998.2.1.exon.3MELO3C016998.2.1.exon.3exon
MELO3C016998.2.1.exon.2MELO3C016998.2.1.exon.2exon
MELO3C016998.2.1.exon.1MELO3C016998.2.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016998.2.1.CDS.2MELO3C016998.2.1.CDS.2CDS
MELO3C016998.2.1.CDS.1MELO3C016998.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016998.2.1.three_prime_UTR.1MELO3C016998.2.1.three_prime_UTR.1three_prime_UTR