MELO3C016982.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016982.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	At3g21570
Location	chr07 : 644067 .. 644360 (+)
Sequence length	294

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTCACTCAAAGCAAGTTCGTCGTTGTCCACAAAATGGTACTATCAACGCCATATCTTACAGACCTCCACACAAACAAAAACGAAGTCTAAACAAGGACAGGGGGGTTACGCTTCAAGTGACAAGTTCACTCTGTAATACAAACGAGCGATTATTCTACGCCGGAACCTCTACCTTTGCTGTCTCACCACCACCAAGTTCTATACCTCTACCCACTTTTGTAATGAAGCCTGGTCTGTTTAGATCAACTACAGATGGAAGTACTCGGAACTCACGGACACAAAAGTAG

mRNA sequence

ATGGAAATTCACTCAAAGCAAGTTCGTCGTTGTCCACAAAATGGTACTATCAACGCCATATCTTACAGACCTCCACACAAACAAAAACGAAGTCTAAACAAGGACAGGGGGGTTACGCTTCAAGTGACAAGTTCACTCTGTAATACAAACGAGCGATTATTCTACGCCGGAACCTCTACCTTTGCTGTCTCACCACCACCAAGTTCTATACCTCTACCCACTTTTGTAATGAAGCCTGGTCTGTTTAGATCAACTACAGATGGAAGTACTCGGAACTCACGGACACAAAAGTAG

Coding sequence (CDS)

ATGGAAATTCACTCAAAGCAAGTTCGTCGTTGTCCACAAAATGGTACTATCAACGCCATATCTTACAGACCTCCACACAAACAAAAACGAAGTCTAAACAAGGACAGGGGGGTTACGCTTCAAGTGACAAGTTCACTCTGTAATACAAACGAGCGATTATTCTACGCCGGAACCTCTACCTTTGCTGTCTCACCACCACCAAGTTCTATACCTCTACCCACTTTTGTAATGAAGCCTGGTCTGTTTAGATCAACTACAGATGGAAGTACTCGGAACTCACGGACACAAAAGTAG

Protein sequence

MEIHSKQVRRCPQNGTINAISYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYAGTSTFAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRTQK

Homology

[Close]

BLAST of MELO3C016982.2.1 vs. NCBI nr
Match: KGN55453.1 (hypothetical protein Csa_4G652660 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1  MEIHSK----QVRRCPQNGTINAISYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYA 60
          MEI+SK     V RCPQ+G+ NAI  RPP+KQK+SLNK + V  QVTSSLCNT ER+FYA
Sbjct: 1  MEINSKDSSIHVLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYA 60

Query: 61 GTSTFAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRT 96
          GTSTF +SPPPSSIPLPTFVMK GLFRST DGST+NSRT
Sbjct: 61 GTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRT 99

[Close]

BLAST of MELO3C016982.2.1 vs. TrEMBL
Match: tr|A0A0A0L158|A0A0A0L158_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652660 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.4e-31
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1  MEIHSK----QVRRCPQNGTINAISYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYA 60
          MEI+SK     V RCPQ+G+ NAI  RPP+KQK+SLNK + V  QVTSSLCNT ER+FYA
Sbjct: 1  MEINSKDSSIHVLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYA 60

Query: 61 GTSTFAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRT 96
          GTSTF +SPPPSSIPLPTFVMK GLFRST DGST+NSRT
Sbjct: 61 GTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRT 99

The following BLAST results are available for this feature:

BLAST of MELO3C016982.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55453.1	1.3e-30	73.74	hypothetical protein Csa_4G652660 [Cucumis sativus]	[more]

BLAST of MELO3C016982.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C016982.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C016982.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L158\|A0A0A0L158_CUCSA	8.4e-31	73.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652660 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C016982.2	MELO3C016982.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C016982.2.1.CDS.1	MELO3C016982.2.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C016982.2.1.exon.1	MELO3C016982.2.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C016982.2.1	MELO3C016982.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33