MELO3C016945T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016945T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Spindle and kinetochore-associated 2
Location	chr7 : 938349 .. 942692 (-)
Sequence length	795

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTGGGAGAGCGCGAAAACCCTAGCGGAGAGAGAGTATGGGGATCGATCATCATCTGCATCAACATCATCAAGCGGCCGATGGATTGATGAATTTGTTCACGAAGGCCAATCTCGATCTCTCAGTAGTTCAGTACAGGCTCGAGAAGGAGTTTCAGCAAATCTATCCTGAAAGCGTAAGAGCAACACAATCATTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCTTCTTCTTCTTCATGTTATTCTTCTCGTTGATTGAATGAAGTAGGCACTGATTAGTTTAATGAGGAAGTTCTAGTGCTTGAAATGAGTATTGAACTTTTTACGTCTCTCTAAGGTGTGAGTGTTTCACAGTGCTAGTACCAAATCCTCGACCTTAATGTAGAATGGAACGACTTCATTCTACAGCGCAAGAGCATTATAGGCTTTCTTATGATTTTAATCGGGCAATATTTGGCTTGAGGTTGGAGTTCAAGATCTGGATCTCAATTTTCAACTATTTTGTTATCTATTTGCTGTTGTTTCATTGTCCTAACACAAGATCACGAGCTTAATGTAGAATTATTCAATTTGATAGCGTAGAAGGAAGTAATCTATCCTGTCAGTTAGAGCTTCATACGTTTATCTTATTTTTCTTCTAATTCTTCTTCTTCTGAGCTGAATCAAGATATATTTCATTACCTTTTGGTTATTGACATTTCACAACAGTATCACAAGATCTTGACCTGCTTATGAGCTAGAGTCGAATTATTTCGGTTTACAGTGTAAGAGCAAGTAATCTATACTGCTGTTCTATATGATTTGAGGAGGAAGTAGTAGCTAGATCTCGAGCTTAATGAAGAGTTATTTCATTTTTCAATTAGGATGCCGTTACTATTGTGTGATTTTATGCTTAATGTAGAATTGCTTCTTTTTCTCTTGCCATTTAGTTTATTTCATACCGCTAACCAGTAATCTGTTGTGGTTCTTGATTTTAAAAGGTTTGTTTCGCTCCATAAATTTGTTGTTCTGAGAATGGATCCTGTAATTTTCAGGTTGAACTTCTTGTTCACCCATAGTTCCTCTTCATTTTTGAAATTCTGATTCTAGTCAGCTCTTTGATGCTTAACGTCTGATTATTGCCGTTTGTTTCTCAATAATCTTTTGTGGCGGTTAAAATGGATTCAAACACAATAGTGACAGATTATTCAGTCTTTGTTTGACGGTTGAGATTTGAAAATTCTCTTAGAATATGTAACGGTGACGGGGATGAAATATCTCGATGTACAAAGTATATCTCCTTGCAGCATAAAGATAACCAAAGAATAAAGTGGAATTCGATCTCCTATTTTCTTCGATATTCTTTCTGGAAAATAGGAGTACTAATTTGTTATTGGTCGAGTGGTGATTTTCATCCAAGATTTTGTGAATTTTCTGCAGGCGAATCCAATGAAGTTAGTTTCTAGGATAAAGAAGATACAGGATGATATATCAACATTGAAAGAGCAGTGTCGTGAAGTTTTGACAGCTAAACAGGTACTTTCTCCATTTATTATCTCAAGAAAAGTATTGGCTAGAGGAAACACACACGTGCTAGATCATGCTCTATGTATACGAACCATTTTTTTTTTTTTTTTTTCTTTCAAGAATTAGGTCTGCAACTCCATTTCACTTCGATTTCGTGTGATGAAATGTTGATATAATGTATATTATATCTAAATAAATGAAATTTGATGTTTGGTAATGTGATGTCTGATGATAATAGGATGAATGTATTTGGTTGGTGAAATGTGATCTGTATTTCTGTTATATATAATTCAAAGTCTAATTTTATGTTTCATAATATTTATTTCGGAAATAATTTGTTTAATGTATTACAAACATTGAACTTAGAAATTATTTATTGTAAATAAATTTGCATTGAAACTCACTTTTCTTTTCCTGGCGATTTTGTTTTTAGTTTTGTGGTTTTAAAATTTATGTGTTATTTTCCAATTTTCTTTCGCCCTTCTCACCTTTCTTAAACAAAAATTTGAATTTGTTCTAAAAATAAAAACTATTCTTTTTTAGTATCCGTTTTGTATTTTAAAAACATGACTAGAACATAGATAACAAAACAAAAAAACTTGGAGTGGTAGTGTTTATAAGTTTAATCTTTAAAAATAACATTATAATGCTTTATTTAATGAACATTTAACTTTTTATTTAAATTAAAGCCAAACCATGTTTTGAAAACTTGGCAAGCAAAAAATTCTAAATGTCTTGGTAGTTGGTGCCTGATCTTCTGCTCTTTATCGTAGGATAAGGATTAGAAAAGACATCAGTACTTGATGGAACGGCTTTGACATGTACACTGCTTTTGCTTGTTTTAGAACTGAACACGCTGTTTGATACCTATTACTAATTTTTTTAGGAGGCATGACACTCTGACGTGTACGGTATTTATTCTTGTTCTGGAACTGAAACTGAGTGATTTCAATACATACTGCTAATTTCGGCGACGATGATGTGCTGTTCAAATGCAGGATGTAATCGATAAGGCGCGGACGGTTCTGCTTGGGAACAGAAACATGCTGCAAAAAATGCAAGCATCTATGGGCATACCCTTTGTTAGCGACCTCGATGATCCTGCATTGGCGGAATTCAAGCAGGTATTCATCGTCAATGACCCTTGGTTTGCATTTTGTTGTGGTCAGTACGACGCATTGATTATTTCTCAGTCTTGACCCTGAATTGCATTTTGTGGTTAATATGCTTAGGCAAGTGATTGCAGCTTTTAGTTTTGATGTCACAATTTACTCTTGGTCTTATCTTTATGCATGTTTTGGATTGATTTTGAAATGGTTAAAATCATTATTGTCATATGTTTAAAACCACTCTAAAATATGTTTTTAATGACTCAAAGTTAGTTTAATATTTAACTTTACTCTCTCAAATGATTTTTTTTTTTTTTTATCAAAGTTGGTTTTGAATCCTGAATAACATCTTTTACGGTGATTTTTAACTATTTTAGTATTATTTTCAACTACGCTTTTTTATTTTTCATTGTGCCTTTTCTTTTGGGTCATTTAAGTTTCCACTTAACATCTGTGTATTAAACTAATACAAGCCTTTTATTTATTTAAAATATCGTTCTTCTTTGGCTATTAGAGAGGGTAACACAGTGAAAGGGACATTTTAGCAAAATTGTCTCAAGTGCTCCATCGTCTGCTTTATTTTGATTTAAAAGGGTTGCAATTTCCAAGTGGTGCTTTTAGTGTTTGTACCATTTGCCAGCAAGTAACCAATATTAAATATACCAAAGGCTTTTCTTTGGATTGGACATCCACATTAGTTTGTATGTGGTATTTCCATCTTTTGGATAAAGCTTACATAACCAAATGTCTCACCCTCTCCATGTAGGAGCGTCGTTCTTTTTAAAGTACTTAATGAGGATGGAGATTGAACCTCTAACCTCTAAAGAGGGAGATAATGCCAATTACTGATAAGTTAACCTCATTTTAGCTTTCAGAGTCATTAATTAATGCTAAACCATTTCCTGTATTTGTCTCATGTAGATTACTGAGGAGTGGACAACACAAGTTCAATCAAAATTTGGTAAGGGTTCTTTTCAAGCTTTCTACAGAATTCTTAATTCAAATTTCACTCATCCTAGTAAAAACTCAAGGCACAACCATTGAACCGTTGATTTTTCTTTTTTTTTTTTATTTATGTTCTTTGTAACAATACGTGGAGTGGGGCATGAGAAGTGGAGAATAGAACTTGTTACATCAAGATCAACACTACAAGTTATACGTCAATTGTATATCTTGAAGAAGATGAATCGAATTCTTCTAATGTATATTTGGATTAACTTTCTAAGTATTGAGAAAAGTGTTTATAAATACTTACAAAGTCAATCCAAATGTACCTTAAATGTTAGGCCCTGTAGCTTTTACCACCCGTCCTTCATTGGCTGTGCTATATGTGTGTGTGCAAATTGTGTGTTTGGTGTCATTGCAGGGGAAGATGCCCAAGAGGACGCAGATTGTAGTAATGTCAACAAGTTGCTATTCTCGGCCGTGGTGCAGGCTTGATTTGTAGAGTTTCAAAAGCAAAATTAAGTTTGCATGTATTCAGGTATTTCTCTACCTAATTTCATGATCTCACCCTGCCCTTCCGTCTACTAAACCTCTTTTACCTTCATCTTTATCAATATTTGACAAATTTCTGGAGAAAAACAAAACCCTGATGAAAACTAGTAGATTTTATTTAGAATTATTAAAAATAAACACGTACCCAAGCAATGGTAGTCTTTGTCATATTGTTAATACTCATTTTTTTTTCTTATTCATTCTCTACATATGATATGTTTGATGC

mRNA sequence

AAATTGGGAGAGCGCGAAAACCCTAGCGGAGAGAGAGTATGGGGATCGATCATCATCTGCATCAACATCATCAAGCGGCCGATGGATTGATGAATTTGTTCACGAAGGCCAATCTCGATCTCTCAGTAGTTCAGTACAGGCTCGAGAAGGAGTTTCAGCAAATCTATCCTGAAAGCGCGAATCCAATGAAGTTAGTTTCTAGGATAAAGAAGATACAGGATGATATATCAACATTGAAAGAGCAGTGTCGTGAAGTTTTGACAGCTAAACAGGATGTAATCGATAAGGCGCGGACGGTTCTGCTTGGGAACAGAAACATGCTGCAAAAAATGCAAGCATCTATGGGCATACCCTTTGTTAGCGACCTCGATGATCCTGCATTGGCGGAATTCAAGCAGATTACTGAGGAGTGGACAACACAAGTTCAATCAAAATTTGGGGAAGATGCCCAAGAGGACGCAGATTGTAGTAATGTCAACAAGTTGCTATTCTCGGCCGTGGTGCAGGCTTGATTTGTAGAGTTTCAAAAGCAAAATTAAGTTTGCATGTATTCAGGTATTTCTCTACCTAATTTCATGATCTCACCCTGCCCTTCCGTCTACTAAACCTCTTTTACCTTCATCTTTATCAATATTTGACAAATTTCTGGAGAAAAACAAAACCCTGATGAAAACTAGTAGATTTTATTTAGAATTATTAAAAATAAACACGTACCCAAGCAATGGTAGTCTTTGTCATATTGTTAATACTCATTTTTTTTTCTTATTCATTCTCTACATATGATATGTTTGATGC

Coding sequence (CDS)

ATGGGGATCGATCATCATCTGCATCAACATCATCAAGCGGCCGATGGATTGATGAATTTGTTCACGAAGGCCAATCTCGATCTCTCAGTAGTTCAGTACAGGCTCGAGAAGGAGTTTCAGCAAATCTATCCTGAAAGCGCGAATCCAATGAAGTTAGTTTCTAGGATAAAGAAGATACAGGATGATATATCAACATTGAAAGAGCAGTGTCGTGAAGTTTTGACAGCTAAACAGGATGTAATCGATAAGGCGCGGACGGTTCTGCTTGGGAACAGAAACATGCTGCAAAAAATGCAAGCATCTATGGGCATACCCTTTGTTAGCGACCTCGATGATCCTGCATTGGCGGAATTCAAGCAGATTACTGAGGAGTGGACAACACAAGTTCAATCAAAATTTGGGGAAGATGCCCAAGAGGACGCAGATTGTAGTAATGTCAACAAGTTGCTATTCTCGGCCGTGGTGCAGGCTTGA

Protein sequence

MGIDHHLHQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQDDISTLKEQCREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQITEEWTTQVQSKFGEDAQEDADCSNVNKLLFSAVVQA*

Homology

[Close]

BLAST of MELO3C016945T1 vs. TrEMBL
Match: A0A0A0L5I9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G651780 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.5e-76
Identity = 149/158 (94.30%), Postives = 153/158 (96.84%), Query Frame = 1


Query: 1   MGIDHHLHQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ 60
           MGIDHHL QHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ
Sbjct: 1   MGIDHHLDQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ 60

Query: 61  DDISTLKEQCREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQ 120
           DDISTLKEQCREVL AKQDVID+ARTVLLGNRNMLQKMQASMGIPFVSDLDDPA +EFKQ
Sbjct: 61  DDISTLKEQCREVLIAKQDVIDQARTVLLGNRNMLQKMQASMGIPFVSDLDDPAFSEFKQ 120

Query: 121 ITEEWTTQVQSKF-GEDAQEDADCSNVNKLLFSAVVQA 158
           ITEEWTTQVQSKF GED QEDADC++VNKLLFSAVVQA
Sbjct: 121 ITEEWTTQVQSKFSGEDGQEDADCNDVNKLLFSAVVQA 158

[Close]

BLAST of MELO3C016945T1 vs. TrEMBL
Match: A0A0B0NFW8_GOSAR (Spindle and kinetochore-associated 2 OS=Gossypium arboreum GN=F383_19789 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.5e-51
Identity = 101/148 (68.24%), Postives = 126/148 (85.14%), Query Frame = 1


Query: 10  HHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQDDISTLKEQ 69
           HHQAAD L+NLFTKAN DL VVQYRLEKEFQQIYP++ANPMKLVSR+KKIQ+++S+L EQ
Sbjct: 13  HHQAADNLVNLFTKANHDLLVVQYRLEKEFQQIYPDNANPMKLVSRMKKIQEELSSLTEQ 72

Query: 70  CREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQITEEWTTQV 129
           CRE+L+AKQD+IDKART+L+GNRN+LQ+MQAS G    SD DDPAL  F QI +EWT QV
Sbjct: 73  CRELLSAKQDLIDKARTILVGNRNLLQRMQASTGTSLTSDSDDPALTNFNQIIDEWTDQV 132

Query: 130 QSKFGEDAQEDADCSNVNKLLFSAVVQA 158
           +S+ G D   +++  ++NKLLFSA+VQ+
Sbjct: 133 RSRIG-DQMRESEPEDINKLLFSAIVQS 159

[Close]

BLAST of MELO3C016945T1 vs. TrEMBL
Match: A0A067KB87_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07062 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.2e-50
Identity = 100/155 (64.52%), Postives = 128/155 (82.58%), Query Frame = 1


Query: 1   MGIDHHLHQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ 60
           MG  +H H HHQAAD L+NL TKAN DL++VQ +LEKEFQQ+YP++ANPMKLV+RIKKIQ
Sbjct: 1   MGHHNHHHHHHQAADSLVNLLTKANHDLTLVQLKLEKEFQQVYPDNANPMKLVNRIKKIQ 60

Query: 61  DDISTLKEQCREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQ 120
            DI+ LKEQCRE+L AKQD+IDKA+T L+GNR++LQKMQASMGIP  S  +DPA A   Q
Sbjct: 61  GDITALKEQCRELLVAKQDLIDKAQTTLIGNRSLLQKMQASMGIPITSADEDPAFANLNQ 120

Query: 121 ITEEWTTQVQSKFGEDAQEDADCSNVNKLLFSAVV 156
           I +EWT QV+S+ G++ Q +++  +VN+LLFSA+V
Sbjct: 121 IIDEWTVQVRSRTGDEVQ-NSEPEDVNRLLFSAIV 154

[Close]

BLAST of MELO3C016945T1 vs. TrEMBL
Match: A0A0D2N3Z2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G038900 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.2e-50
Identity = 101/148 (68.24%), Postives = 125/148 (84.46%), Query Frame = 1


Query: 10  HHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQDDISTLKEQ 69
           HHQAAD L+NLFTKAN DL VVQYRLEKEFQQIYP++ANPMKLVSRIKKIQ+++S+L EQ
Sbjct: 13  HHQAADNLVNLFTKANHDLLVVQYRLEKEFQQIYPDNANPMKLVSRIKKIQEELSSLTEQ 72

Query: 70  CREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQITEEWTTQV 129
           CRE+L+AKQD+IDKART+L+GNRN+L +MQAS G    SD DD AL  F QI +EWT QV
Sbjct: 73  CRELLSAKQDLIDKARTILVGNRNLLHRMQASTGTSLTSDSDDLALTNFNQIIDEWTDQV 132

Query: 130 QSKFGEDAQEDADCSNVNKLLFSAVVQA 158
           +S+ G+  QE ++  ++NKLLFSA+VQ+
Sbjct: 133 RSRIGDQMQE-SEPEDINKLLFSAIVQS 159

[Close]

BLAST of MELO3C016945T1 vs. TrEMBL
Match: B9IL86_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s02830g PE=4 SV=2)

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-48
Identity = 92/151 (60.93%), Postives = 125/151 (82.78%), Query Frame = 1


Query: 6   HLHQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQDDIST 65
           H H HHQA D L+NLFTKAN DL++VQ +LE+EFQQIYP++ANP+KLV+RIKK+Q D++ 
Sbjct: 3   HRHVHHQATDSLVNLFTKANNDLTLVQLKLEREFQQIYPDNANPVKLVNRIKKVQGDLTV 62

Query: 66  LKEQCREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQITEEW 125
           LK+QC+E+L AKQD+IDKARTVL+GNRN++Q+M+ S+G+    D +DPA   F QI +EW
Sbjct: 63  LKDQCQELLAAKQDLIDKARTVLVGNRNLIQRMEVSIGVDVTGDAEDPAFVNFNQIIDEW 122

Query: 126 TTQVQSKFGEDAQEDADCSNVNKLLFSAVVQ 157
           TTQV+++ G D + D+D  ++NKLLFSA+VQ
Sbjct: 123 TTQVRARTG-DEKHDSDAEDINKLLFSAIVQ 152

[Close]

BLAST of MELO3C016945T1 vs. TAIR10
Match: AT2G24970.1 (AT2G24970.1 unknown protein)

HSP 1 Score: 168.3 bits (425), Expect = 3.8e-42
Identity = 84/148 (56.76%), Postives = 115/148 (77.70%), Query Frame = 1


Query: 8   HQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQDDISTLK 67
           + HHQA D L+N+F++A+ DL+VV  +L+KEFQQ+YP +ANPMKL+ RIKK+Q+D++ LK
Sbjct: 4   NHHHQAVDNLLNVFSRASHDLTVVHSKLDKEFQQMYPANANPMKLIQRIKKLQEDVTLLK 63

Query: 68  EQCREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQITEEWTT 127
            QC ++L+AKQD+IDKA+T L+GN N++QKM AS+G     D DD ALA+F QI +EWT 
Sbjct: 64  HQCLDLLSAKQDLIDKAQTTLVGNCNLIQKMNASLGESTNGDTDD-ALADFNQIIDEWTM 123

Query: 128 QVQSK-FGEDAQEDADCSNVNKLLFSAV 155
           QV+S+  GE   EDAD  ++NK+LFSA+
Sbjct: 124 QVRSRTVGE--TEDADKEDINKMLFSAI 148

[Close]

BLAST of MELO3C016945T1 vs. NCBI nr
Match: gi|659104142|ref|XP_008452819.1| (PREDICTED: uncharacterized protein LOC103493729 [Cucumis melo])

HSP 1 Score: 312.8 bits (800), Expect = 3.5e-82
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MGIDHHLHQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ 60
           MGIDHHLHQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ
Sbjct: 1   MGIDHHLHQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ 60

Query: 61  DDISTLKEQCREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQ 120
           DDISTLKEQCREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQ
Sbjct: 61  DDISTLKEQCREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQ 120

Query: 121 ITEEWTTQVQSKFGEDAQEDADCSNVNKLLFSAVVQA 158
           ITEEWTTQVQSKFGEDAQEDADCSNVNKLLFSAVVQA
Sbjct: 121 ITEEWTTQVQSKFGEDAQEDADCSNVNKLLFSAVVQA 157

[Close]

BLAST of MELO3C016945T1 vs. NCBI nr
Match: gi|778696856|ref|XP_011654216.1| (PREDICTED: spindle and kinetochore-associated protein 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 7.6e-77
Identity = 148/157 (94.27%), Postives = 152/157 (96.82%), Query Frame = 1


Query: 1   MGIDHHLHQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ 60
           MGIDHHL QHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ
Sbjct: 1   MGIDHHLDQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ 60

Query: 61  DDISTLKEQCREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQ 120
           DDISTLKEQCREVL AKQDVID+ARTVLLGNRNMLQKMQASMGIPFVSDLDDPA +EFKQ
Sbjct: 61  DDISTLKEQCREVLIAKQDVIDQARTVLLGNRNMLQKMQASMGIPFVSDLDDPAFSEFKQ 120

Query: 121 ITEEWTTQVQSKFGEDAQEDADCSNVNKLLFSAVVQA 158
           ITEEWTTQVQSKF ED QEDADC++VNKLLFSAVVQA
Sbjct: 121 ITEEWTTQVQSKFWEDGQEDADCNDVNKLLFSAVVQA 157

[Close]

BLAST of MELO3C016945T1 vs. NCBI nr
Match: gi|449455497|ref|XP_004145489.1| (PREDICTED: spindle and kinetochore-associated protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 2.2e-76
Identity = 149/158 (94.30%), Postives = 153/158 (96.84%), Query Frame = 1


Query: 1   MGIDHHLHQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ 60
           MGIDHHL QHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ
Sbjct: 1   MGIDHHLDQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ 60

Query: 61  DDISTLKEQCREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQ 120
           DDISTLKEQCREVL AKQDVID+ARTVLLGNRNMLQKMQASMGIPFVSDLDDPA +EFKQ
Sbjct: 61  DDISTLKEQCREVLIAKQDVIDQARTVLLGNRNMLQKMQASMGIPFVSDLDDPAFSEFKQ 120

Query: 121 ITEEWTTQVQSKF-GEDAQEDADCSNVNKLLFSAVVQA 158
           ITEEWTTQVQSKF GED QEDADC++VNKLLFSAVVQA
Sbjct: 121 ITEEWTTQVQSKFSGEDGQEDADCNDVNKLLFSAVVQA 158

[Close]

BLAST of MELO3C016945T1 vs. NCBI nr
Match: gi|728834005|gb|KHG13448.1| (Spindle and kinetochore-associated 2 [Gossypium arboreum])

HSP 1 Score: 208.0 bits (528), Expect = 1.2e-50
Identity = 101/148 (68.24%), Postives = 126/148 (85.14%), Query Frame = 1


Query: 10  HHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQDDISTLKEQ 69
           HHQAAD L+NLFTKAN DL VVQYRLEKEFQQIYP++ANPMKLVSR+KKIQ+++S+L EQ
Sbjct: 13  HHQAADNLVNLFTKANHDLLVVQYRLEKEFQQIYPDNANPMKLVSRMKKIQEELSSLTEQ 72

Query: 70  CREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQITEEWTTQV 129
           CRE+L+AKQD+IDKART+L+GNRN+LQ+MQAS G    SD DDPAL  F QI +EWT QV
Sbjct: 73  CRELLSAKQDLIDKARTILVGNRNLLQRMQASTGTSLTSDSDDPALTNFNQIIDEWTDQV 132

Query: 130 QSKFGEDAQEDADCSNVNKLLFSAVVQA 158
           +S+ G D   +++  ++NKLLFSA+VQ+
Sbjct: 133 RSRIG-DQMRESEPEDINKLLFSAIVQS 159

[Close]

BLAST of MELO3C016945T1 vs. NCBI nr
Match: gi|225430535|ref|XP_002285577.1| (PREDICTED: uncharacterized protein LOC100264643 [Vitis vinifera])

HSP 1 Score: 205.7 bits (522), Expect = 6.0e-50
Identity = 98/149 (65.77%), Postives = 126/149 (84.56%), Query Frame = 1


Query: 9   QHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQDDISTLKE 68
           QHH+A DGL+NLFTKAN DL++VQ+RLEKEFQQIYP +ANPM LVSRIKK+Q+D+ +LKE
Sbjct: 5   QHHEAMDGLLNLFTKANHDLTLVQHRLEKEFQQIYPHNANPMILVSRIKKLQEDLCSLKE 64

Query: 69  QCREVLTAKQDVIDKARTVLLGNRNMLQKMQASMGIPFVSDLDDPALAEFKQITEEWTTQ 128
           QC+E+L AKQD+IDKART L+GNR++LQ+MQA MGIP  SD DDPA A F QI +EWT Q
Sbjct: 65  QCQELLAAKQDLIDKARTTLVGNRSLLQRMQAPMGIPLASDSDDPAYANFNQIIDEWTNQ 124

Query: 129 VQSKFGEDAQEDADCSNVNKLLFSAVVQA 158
           V+S+ G D   +++  ++NK+LFSA+VQ+
Sbjct: 125 VRSRTG-DVTHESESEDINKMLFSAIVQS 152

The following BLAST results are available for this feature:

BLAST of MELO3C016945T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5I9_CUCSA	1.5e-76	94.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G651780 PE=4 SV=1	[more]
A0A0B0NFW8_GOSAR	8.5e-51	68.24	Spindle and kinetochore-associated 2 OS=Gossypium arboreum GN=F383_19789 PE=4 SV...	[more]
A0A067KB87_JATCU	7.2e-50	64.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07062 PE=4 SV=1	[more]
A0A0D2N3Z2_GOSRA	7.2e-50	68.24	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G038900 PE=4 SV=1	[more]
B9IL86_POPTR	1.0e-48	60.93	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s02830g PE=4 SV=2	[more]

BLAST of MELO3C016945T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24970.1	3.8e-42	56.76	unknown protein	[more]

BLAST of MELO3C016945T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104142\|ref\|XP_008452819.1\|	3.5e-82	100.00	PREDICTED: uncharacterized protein LOC103493729 [Cucumis melo]	[more]
gi\|778696856\|ref\|XP_011654216.1\|	7.6e-77	94.27	PREDICTED: spindle and kinetochore-associated protein 2 isoform X2 [Cucumis sati...	[more]
gi\|449455497\|ref\|XP_004145489.1\|	2.2e-76	94.30	PREDICTED: spindle and kinetochore-associated protein 2 isoform X1 [Cucumis sati...	[more]
gi\|728834005\|gb\|KHG13448.1\|	1.2e-50	68.24	Spindle and kinetochore-associated 2 [Gossypium arboreum]	[more]
gi\|225430535\|ref\|XP_002285577.1\|	6.0e-50	65.77	PREDICTED: uncharacterized protein LOC100264643 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR026762	Ska2

Vocabulary: **Cellular Component**
Term	Definition
GO:0000940	condensed chromosome outer kinetochore
GO:0005876	spindle microtubule

Vocabulary: **Biological Process**
Term	Definition
GO:0007059	chromosome segregation
GO:0051301	cell division

Vocabulary: **Molecular Function**
Term	Definition
GO:0008017	microtubule binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0007059	chromosome segregation
biological_process	GO:0006261	DNA-dependent DNA replication
cellular_component	GO:0000940	condensed chromosome outer kinetochore
cellular_component	GO:0005876	spindle microtubule
cellular_component	GO:0045298	tubulin complex
molecular_function	GO:0008017	microtubule binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C016945	MELO3C016945	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C016945T1	MELO3C016945T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C016945T1.cds5	MELO3C016945T1.cds5	CDS
MELO3C016945T1.cds4	MELO3C016945T1.cds4	CDS
MELO3C016945T1.cds3	MELO3C016945T1.cds3	CDS
MELO3C016945T1.cds2	MELO3C016945T1.cds2	CDS
MELO3C016945T1.cds1	MELO3C016945T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026762	Spindle and kinetochore-associated protein 2	PANTHER	PTHR32017:SF3	SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 2	coord: 5..156 score: 5.2
IPR026762	Spindle and kinetochore-associated protein 2	PFAM	PF16740	SKA2	coord: 11..118 score: 2.6
None	No IPR available	unknown	Coil	Coil	coord: 56..76 scor
None	No IPR available	PANTHER	PTHR32017	FAMILY NOT NAMED	coord: 5..156 score: 5.2