MELO3C015565T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015565T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Spc97 / Spc98 family of spindle pole body (SBP) component
Location	chr2 : 2909963 .. 2915847 (-)
Sequence length	996

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTCATTATATTCTACGAAAGTGTTGAATTTCGTAGTTCTCCCTCTCTCTCGCAAAATCGCTCAAAATCCCGTCGTCGAAACGATCCTCCGGCTCCCACTGTCGATACAATCCTCCAGCCGCCGCTGTCGAAAGAATTCTCCAGCCAACGCCGTTGAAATTCGGGACGTCGCAACGCCGTCGGAATCAAGTTCGCGCCATCTCTGTTCGTCGTCTTCCGCCGTCCAGTGCTTCTCCTTGCTCCCTCCTCTGTCCGGTTCGTTCTCCGTTCATTCCTATAGTGCTCGTTTTTGCTGGTTATTTCGTTTTCTTGCTTCCGTGTTCTAATGTTGGAATTTGACACGTAAATTTAAAATTAACTTTTGAGTTTGATTGTGGTTTACTGAATAGCATTTCATTAGGGTTTTGTATCATAAACGTGAAGAAGATTACTTGTTGTTGCGAGTTATGAGCGAACGAGGAAGAGATTTTGAGTGAATGTTAGGATTTTGAGTATATGTTAGGATTTTGAATATATGTTAGGATGGAAAGGGTGAGAACAGAGGGAACGAGAACTTGAGCGAGGTGTCTGCAATTAGTAAGTAAAATTTCTCCATTACCACTGGTGCAAATTTCAAACAAAGGGGATATCTTGAGACACCAGAGTAGGAACACTTGTGGCACATGCTCTACGTGACTGATGAGCCCGAGACCACAAAAGAGAATTGAAAAAGAAAAACATCACCCATGGATGACAACAACTTTCACCACCAATCAATAAAATGAGGCTGGATTCAAGATGTATGCCTATGGATTCAACACCCTGATCCCAAATCGAAGATACCAAACAAAGGGACACAGAAATCATTGTCCATGAGATTGTAGAAACTCCACACTGAAAATTTCTATTAAAAACACAGGAATCTACAGTTTGTACAATCATTTGCACAAGCATCTTCAAAACATAAATCAAAAAATGATTCACACTAGAACGTGAATTAAGAATTTAAGAGGACAAGTTTGAAGCACACTGCCTTCGGCATTGAATCAATGTCTTCTTCTTGGACCATTGGAAAGCAACAAACCGTAAATTCTAGTTGCACTTTTTTACTTGAACCTTTTGAGTTGATTGTTGAACTTTAGGCCCCTATGGTGTTTTACTAATTTTGAAGATCTAAGTTGAAGTTTCTTCATTTGGTAACTGCTCTCGTCTTTTACTCTTTGTCAAATGGTAACAACTCCTTATTCACGTATGGATTAAAGTATATAGATCAAGTTGACCATCGTGCTTATCCTTTGGCCGACAGGTCCAATGCCAATTCAAATAAAAGGTTTAAGTCATGGTGACTACATACTTGGTATTTAATATTATAAAGAGTAACTATGATAATATGATAAGGTTCAATAGATATATGGAAGAAATTATAGGTCTAGCCATACCATTATAGTATAGGTCAGGCTTACACTCTACTACTGATAGGTTTGTCTACTATTGTGGTACTTCAAAATGGTCCCATTAGACATTAATAAATGTTAAATTTGGTCTGAAATCTGGTCTGGTTTGAATTTATTAACTATGGTCTTTCTGGTGGTAGTTCATATTTATGACGATTGTAATATTGGTCACCAGGTTGAGATTATGCTGGATGGTTTGATATCGACTTGTTTTGCCGACATCTATTGCAGTCATGTCTGTTTTCTTCTTTTCCTTATAGCTTGGTAAAAACTTGGATAAATTCCTCTTGCATTATCATCTAGGCACAGTTGGGGGTGGCGTTTTGGTTAATCTGGTTTAGCCTTTGAACTGTTATGTGTTTGGTTTGATTTGTTTGTAAGTTGAACTTTTCAATTTAGCATTTGAAATTCTATGTATATTTATAGGCAAAAAATTTAATTTACTCAATTTTGTGCAGATGATTAATTAAGTAAAAATAACTAGAAATAAGTTGTAAAATGGGTAATCCAGTACGTAAAGGGTACTAAGAACTATGGTTAAATATGGATAGATAGTGATTATGAAATTCAATGTTAATAAAGTTTTGTTGACTTGATTTTACCTTTTGATTTAGATAAGAGAAGATCTATATCTGTCTTTTAACAAACCTTTTAGAAAGGAGTATAATTAAGTGGTCTTCTAGTGTTGCATTCTTTTGTTTGAATGATTTTGATGTGTTCATTATTATGCTTATTCATGCATTGACTATTATAGTCAAGTTCAACTTTATTCTCATATAGTTTTAAGGAAAAAAAAATTATCATTCCCATCTAGTTCAGTTCAATGTAGTTTATCACATTCCAAGAGATTTAGTTAAACACTTGTCCTTAACATATCAAATATTGTCTGCTTAGAGAACGTCCAGGCTTTTAACTTGGAGTTTGCACTTTAGTTACTCTAAGTTGTTTATTTCATGCGGGGTGAATTGAGCTTAGTTGGAATTCTTACCGTGCATTTAGACTATCTTTCTTCACTTTTCCATTCAAGCTGTAATTAGTTAAGATTGTTCCAATTCCTCATATCTTCCTTTTTCTCCCTTGCTACATCTTCCATGGGGTTTTCTTTTCAAAATTTATAGAAACCCCCCCACCCCCCAAAAAACAAAAGCTGCTCAATATAGAACCTAAGTATCTTGTGCGTTTCTGCTGCAAACAAGTTTGACTAAAGCCTAACTTCTTAGATATTTGAATTCGAAATCGTCTAATGGACAAATTATGGATGATGGAGAAGAGAGTGTCTACGGAGTATGAATTGGGAGTGGAAGCGTCCATTCAATTTGGTTTTCGTGATGGCAAAGGTTCCGGTACTATTAGGTGTCCATGTTTGAAATCTGGGAATCATTTGTCGCTCCACTGCCGCTGGTGATAAGCTCTTGAGTTCTTGAACCAGGCCCTAATGATGAATTTTAGCTTCTATTTTGTTGTAAATTAATCTCTTCGTTTCAAGATCATCGATATATTACTCAAGGACTAATTTTGTTTGGGTAATTTATGCTAGCGGTCACGGACTAATTTTGGCATATTAACCTTGGAATCTTCCTTACATTGGCATGTAATGGATAGGTCAAACAAAGTTGTGTGAGCGGTTTTTGGTCAATGTGATCATGTTCTACATGTAATAACCTATAAGGGTAGTGACAAGATGTTTATGTTATGGAAATCGTGTTAGTTTGAGCTTACACATCTACTTTGTTGAGTTTTTACTTTCATTGTTGGTCTATTTCACAGTTTGAAGTTAGAGTTAGCTTTGATTTTTCCTTTAGGTTTGTTTACTCAAACTATTTTAGCTTTGTTTGTGTATTAATTTTTTTCTTTTTCTTTTTTACTTTTGGAAGATCAGTGAAAGTTGATGCTTGTTGTGACAGTTTAATAATTTGACTTTGAAGTCTTTTCTGGAGTAATATTGCGGAAGATTTCTATGGAAGAGGCGAATGAAATTTTGAAGAATAACAGAGTTGAAGATATCAGTTGGCTTTGTTCACTATCTGAATCAGAACTTGTAAGTTCATTTGGAATCAGAGTTTCTTTCTCGTTATTTCAATAATGTTTGCATTTGTCATTGATTTATTGAATCCCTTTGCCTACGTGCTAACTTGCTTATAATCCGAGCATTCTTCTTGTTGATGTTGTATACCTACAATGTTTCTTGTTCTTTTTTTTCTTTCTTGGAAACGATTAATATCTTCTACTTGACCTTGATTGATAACAATGGACGATGAAAGTACAGACATTGTGAGCTGTGTGGGCTTTTCTTCTTATTTTGATTTATGAGAACTTTTTACCATCATTTTCCGAACAAATTGACACAGTATTATGGTGTATGTGGCAGGACCTGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGCAATTGGTCATGAAAATTTAGCTGAAAAATTTGATTTGAAGACGCTACGTGCTATTGGTAGGTTGCATTTATTCCAATTGTATTACCTCTATTTATGCCTTTTGTCTATTAAGTTGTTAGTTTAAGCATAGCTAGGTGGACAAGACACCCATTGTCATCTCAAAAGTCAACAATTCAATTCCTCACCCACCCTATTGAGCTAAAACAAAAATATGAGTCTTGCTCCACTATTTTGGTGCTATCTACTATATTAGTTGCTGAACCAATTACCATTCAATCCAAAGGTTGATATGTTTGATCTCCCACTCTAACACCGTTGAACTAGGGAAAATAATTGTCTAGAAAATAGGTGTAAATTCTCTTTCTGGCATCATTGTCATACAGCCACTGCGTTAGTTATTTTCCATATTAGTTGCTGAACTAATTTTGTATTTGTGGCGCTATAAATGAAGGGTTTGTTTTGATGGAACATCTTAAAGGAGAACTTAGGACATCAGATGTTTCGGATCTTTCTCAATCTGCTACCTTAAATGCGTGCAACTTGTTAGACAGCAATGTTGAGAAAATTTTGTCAATTGATGAGATAATGGCAAGTATCTGCTCAGACAGAAGGAAGAAACCAGGAAAAAGGTTGGTACGATTTACAAGTTGTTGGGTTTGTATTGTTCAAGAGCACATTTTGGAAAAAATAGTGAAATGTCATGTTAATTATTGCTTTGTTATCTTAATACTTCATATTAACAGGGGAAAAAAACTTTTGACAACTACATTAACCTTTTGGTATTCGTAAGGCCTTCTATTCATATTAATTTTCATCGTGCATTGGATAGATAAGTAGTAGATCAGTTTGATCATGTCTGTTCCTAATATTTTTGCTCCGTCCTCTGGAGTGGTTGTTGTTTCCATTGCGTTTTCTTATTTAGGTGTTTAGAATCACGTTGGGAAGATGTGAGGCCTCATGATCATTATATGATACACGAGTTACTTCTCTCGTATGCAATTAGCATAGAGATGGAGATATTCATGTTTATCCTATATGATATTAAATATATGAAGTCCCCTCGGGTATTTGTTCCAAAAAGAAAAAAGAAAAATTTGACCCAAGATAGATGAACCCAAAGAGATCTTGAGAGAGAGGAGGTATGCTGAGGATCTTGCATCAGAAAAACTTACCATCATACATGAGTTACTCCGCTCATTATCAACTTATTTTTATAGGAAGTACTAAGAAGTACTTACTTTCTCACCCCTACATTCTCTTGTTTTCTGCCTTCCTCAAGTGATCGGATTCATTCTGTTCTATTTACAATCGTAGATTTACTAATTCATTTGAGACATAGTCTCAGTAAATAATGATTAAGAGGTCAAAGGTTCAATCTGTGGTGGTTACCTACGTAGAAATTATTTTATTACGAGTTTTCTCGACACTCAAATATTGTAAGGTTTGGTAGGTTGTCCTGTGAGATTAGTTGTCGTGTGCATAAGCTATGATTGACACTCATGGATATAAAAAAAACACATGGTATCATTTGAATTGAACCTAATTATAATTTCATGTATGGATTCTAATGTTCTTAATTACTTGCACATTGTGCTTTAGTTTAATGCTGTGCTTCTCAATTTGCATTCCCAACATTTGAACTCATACTCTTTCTCTTGTCTTCTTTTCCCTCTCTCCCCTCTCTTTCTAGGCCACGTAAAAATTAGGTTGATTCGAGATACAAGAACGAGAAGTCGTGAATTAGAAAAGACTAGAAGTTCATGGAAGTTGTCTTTGCCAACATGTCGGCATCATGCAGCTTCCCACACTGCAAGACTTGGCAGGAATCATTCTAACAACCATGGTCGTCGCAAACATTTTTGTTAGTTATAGATATAATAGTGTAGGCAGCGAAAGGAACATATATATTAATGGTTCGAGCTATATCAGATGATAGAGAAAATTTTGTAGTTCTCCGAACGAAGAATGTGAGAATTTTGTTAAATTACAAGTTTAGTTTTTATTTGTCTATTTGGTAAAATATAGTCTAGTCTTTG

mRNA sequence

GTGTCATTATATTCTACGAAAGTGTTGAATTTCGTAGTTCTCCCTCTCTCTCGCAAAATCGCTCAAAATCCCGTCGTCGAAACGATCCTCCGGCTCCCACTGTCGATACAATCCTCCAGCCGCCGCTGTCGAAAGAATTCTCCAGCCAACGCCGTTGAAATTCGGGACGTCGCAACGCCGTCGGAATCAAGTTCGCGCCATCTCTGTTCGTCGTCTTCCGCCGTCCAGTGCTTCTCCTTGCTCCCTCCTCTGTCCGTCTTTTCTGGAGTAATATTGCGGAAGATTTCTATGGAAGAGGCGAATGAAATTTTGAAGAATAACAGAGTTGAAGATATCAGTTGGCTTTGTTCACTATCTGAATCAGAACTTGACCTGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGCAATTGGTCATGAAAATTTAGCTGAAAAATTTGATTTGAAGACGCTACGTGCTATTGGGTTTGTTTTGATGGAACATCTTAAAGGAGAACTTAGGACATCAGATGTTTCGGATCTTTCTCAATCTGCTACCTTAAATGCGTGCAACTTGTTAGACAGCAATGTTGAGAAAATTTTGTCAATTGATGAGATAATGGCAAGTATCTGCTCAGACAGAAGGAAGAAACCAGGAAAAAGGCCACGTAAAAATTAGGTTGATTCGAGATACAAGAACGAGAAGTCGTGAATTAGAAAAGACTAGAAGTTCATGGAAGTTGTCTTTGCCAACATGTCGGCATCATGCAGCTTCCCACACTGCAAGACTTGGCAGGAATCATTCTAACAACCATGGTCGTCGCAAACATTTTTGTTAGTTATAGATATAATAGTGTAGGCAGCGAAAGGAACATATATATTAATGGTTCGAGCTATATCAGATGATAGAGAAAATTTTGTAGTTCTCCGAACGAAGAATGTGAGAATTTTGTTAAATTACAAGTTTAGTTTTTATTTGTCTATTTGGTAAAATATAGTCTAGTCTTTG

Coding sequence (CDS)

ATGGAAGAGGCGAATGAAATTTTGAAGAATAACAGAGTTGAAGATATCAGTTGGCTTTGTTCACTATCTGAATCAGAACTTGACCTGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGCAATTGGTCATGAAAATTTAGCTGAAAAATTTGATTTGAAGACGCTACGTGCTATTGGGTTTGTTTTGATGGAACATCTTAAAGGAGAACTTAGGACATCAGATGTTTCGGATCTTTCTCAATCTGCTACCTTAAATGCGTGCAACTTGTTAGACAGCAATGTTGAGAAAATTTTGTCAATTGATGAGATAATGGCAAGTATCTGCTCAGACAGAAGGAAGAAACCAGGAAAAAGGCCACGTAAAAATTAG

Protein sequence

MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRAIGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGKRPRKN*

Homology

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BLAST of MELO3C015565T1 vs. TrEMBL
Match: A0A0A0KW48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166940 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-54
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 1


Query: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60
           MEEANEILKN R+E ISWLCSLSESELDLLISIKMLVLQRAKA+GHENLAEKFDLK  RA
Sbjct: 180 MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAVGHENLAEKFDLKMQRA 239

Query: 61  IGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELRTSDVSDLSQSA LNACNLLDSN+EKILSIDEIMASICSDRRKKPGK
Sbjct: 240 IGFVLMEHLKGELRTSDVSDLSQSA-LNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 299

Query: 121 RPRK 125
           RP++
Sbjct: 300 RPQE 302

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BLAST of MELO3C015565T1 vs. TrEMBL
Match: A0A0A0LBP9_CUCSA (Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_3G633280 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.2e-54
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 1


Query: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60
           MEEANEILKN R+E ISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDL+TLRA
Sbjct: 59  MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLRTLRA 118

Query: 61  IGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKG+LRTSDVSDLSQS T NACNLLDSN+EKILSIDEIMASICSDRRKKPGK
Sbjct: 119 IGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 178

Query: 121 RPRK 125
           R R+
Sbjct: 179 RSRE 181

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BLAST of MELO3C015565T1 vs. TrEMBL
Match: M1BX27_SOLTU (Gamma-tubulin complex component OS=Solanum tuberosum GN=PGSC0003DMG400021318 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.7e-28
Identity = 68/124 (54.84%), Postives = 97/124 (78.23%), Query Frame = 1


Query: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60
           M+E   IL NNR+ED+ WLCSL+ESELDLLI +K+L+ QRAK IGH++LA KFDLKTLRA
Sbjct: 1   MKEQMAILGNNRIEDVWWLCSLTESELDLLIGLKVLIQQRAKKIGHKSLANKFDLKTLRA 60

Query: 61  IGFVLMEHLKGELR----TSDVSDLSQSATLNACNLLDSNVEKI---LSIDEIMASICSD 118
           + FVLME+LKG+LR    T D ++   S+TL+ACNLL+ +++K    + ++++ + IC+D
Sbjct: 61  LSFVLMENLKGKLRDLSGTPDTAE--SSSTLDACNLLNYDLDKTFANMGVEQLSSYICND 120

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BLAST of MELO3C015565T1 vs. TrEMBL
Match: A0A0V0HHC0_SOLCH (Gamma-tubulin complex component OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.0e-28
Identity = 67/124 (54.03%), Postives = 97/124 (78.23%), Query Frame = 1


Query: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60
           M+E   IL NNR+ED+ WLCSL+ESELDLLI +K+L+ QRAK IGH++LA KFDLKTLRA
Sbjct: 1   MKEQMAILGNNRIEDVRWLCSLTESELDLLIGLKVLIQQRAKKIGHKSLANKFDLKTLRA 60

Query: 61  IGFVLMEHLKGELR----TSDVSDLSQSATLNACNLLDSNVEKI---LSIDEIMASICSD 118
           + FVLME+LKG+LR    T D ++   S++L+ACNLL+ +++K    + ++++ + IC+D
Sbjct: 61  LSFVLMENLKGKLRDLSGTPDTAE--SSSSLDACNLLNYDLDKTFANMGVEQLSSYICND 120

[Close]

BLAST of MELO3C015565T1 vs. TrEMBL
Match: K4AST4_SOLLC (Gamma-tubulin complex component OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-27
Identity = 68/122 (55.74%), Postives = 95/122 (77.87%), Query Frame = 1


Query: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60
           M+E   IL NNR+ED+ WLCSL+ESELDLLI +K+L+ QRAK IGH++LA KFDLKTLRA
Sbjct: 1   MKEQMAILGNNRIEDVRWLCSLTESELDLLIGLKVLIQQRAKKIGHKSLANKFDLKTLRA 60

Query: 61  IGFVLMEHLKGELR-TSDVSDLSQ-SATLNACNLLDSNVEKI---LSIDEIMASICSDRR 118
           + FVLME+LKG+LR  S   D ++ S+TL+ACNLL+   +K    + ++++ + IC+D+R
Sbjct: 61  LSFVLMENLKGKLRDLSGTPDTAEFSSTLDACNLLNYVRDKTFANMGVEQLSSYICNDKR 120

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BLAST of MELO3C015565T1 vs. TAIR10
Match: AT1G80245.1 (AT1G80245.1 Spc97 / Spc98 family of spindle pole body (SBP) component)

HSP 1 Score: 127.9 bits (320), Expect = 4.5e-30
Identity = 63/127 (49.61%), Postives = 87/127 (68.50%), Query Frame = 1


Query: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60
           MEE  +ILKNNR +D++W CSLSESELDLLIS+K L +QRAK  GH+ LA+KFDLK LR+
Sbjct: 1   MEELTQILKNNRTDDLTWFCSLSESELDLLISLKKLAIQRAKISGHQELADKFDLKLLRS 60

Query: 61  IGFVLMEHLKGELRTSD---VSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKK 120
           +G VLMEH +  ++       S + Q   L+ CNLL ++V+  + I+EI+  IC ++ KK
Sbjct: 61  LGLVLMEHARKRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEILTQICDNKSKK 120

Query: 121 PGKRPRK 125
             ++ R+
Sbjct: 121 KARKRRR 127

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BLAST of MELO3C015565T1 vs. TAIR10
Match: AT4G00695.3 (AT4G00695.3 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 115.2 bits (287), Expect = 3.0e-26
Identity = 63/127 (49.61%), Postives = 88/127 (69.29%), Query Frame = 1


Query: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENL-AEKFDLKTLR 60
           MEE ++ILKNNR +D++W CSLSESELDLLIS+K LV++RAK  G E+L A+KFDLK LR
Sbjct: 1   MEELSQILKNNRTDDLTWFCSLSESELDLLISLKKLVIRRAKVSGLEDLVADKFDLKMLR 60

Query: 61  AIGFVLMEHLKGELRTSDVSDLSQS-----ATLNACNLLDSNVEKILSIDEIMASICSDR 120
           ++G VLME+++   R  D + L+ S     + L++CNLL ++V+  + I+EI+  IC+  
Sbjct: 61  SLGLVLMEYVR--KRVEDDTSLAPSVVQELSLLDSCNLLKTHVDDTVDIEEILTDICNKN 120

Query: 121 RKKPGKR 122
               G R
Sbjct: 121 WATKGTR 125

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BLAST of MELO3C015565T1 vs. NCBI nr
Match: gi|659100239|ref|XP_008450997.1| (PREDICTED: uncharacterized protein LOC103492413 [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 2.1e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60
           MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA
Sbjct: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60

Query: 61  IGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGK
Sbjct: 61  IGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGK 120

Query: 121 RPRKN 126
           RPRKN
Sbjct: 121 RPRKN 125

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BLAST of MELO3C015565T1 vs. NCBI nr
Match: gi|659120858|ref|XP_008460383.1| (PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo])

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-54
Identity = 114/124 (91.94%), Postives = 118/124 (95.16%), Query Frame = 1


Query: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60
           MEEANEILKNNR+EDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLR 
Sbjct: 1   MEEANEILKNNRIEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRT 60

Query: 61  IGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELRTSDV+DLSQSA LNACNLLDSN+EK L IDEIM SIC DRRKKPGK
Sbjct: 61  IGFVLMEHLKGELRTSDVTDLSQSA-LNACNLLDSNLEKSLPIDEIMTSICLDRRKKPGK 120

Query: 121 RPRK 125
           RPR+
Sbjct: 121 RPRE 123

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BLAST of MELO3C015565T1 vs. NCBI nr
Match: gi|778692248|ref|XP_011653427.1| (PREDICTED: uncharacterized protein LOC105435221 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 2.5e-54
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 1


Query: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60
           MEEANEILKN R+E ISWLCSLSESELDLLISIKMLVLQRAKA+GHENLAEKFDLK  RA
Sbjct: 1   MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAVGHENLAEKFDLKMQRA 60

Query: 61  IGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELRTSDVSDLSQSA LNACNLLDSN+EKILSIDEIMASICSDRRKKPGK
Sbjct: 61  IGFVLMEHLKGELRTSDVSDLSQSA-LNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 120

Query: 121 RPRK 125
           RP++
Sbjct: 121 RPQE 123

[Close]

BLAST of MELO3C015565T1 vs. NCBI nr
Match: gi|700198692|gb|KGN53850.1| (hypothetical protein Csa_4G166940 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 2.5e-54
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 1


Query: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60
           MEEANEILKN R+E ISWLCSLSESELDLLISIKMLVLQRAKA+GHENLAEKFDLK  RA
Sbjct: 180 MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAVGHENLAEKFDLKMQRA 239

Query: 61  IGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKGELRTSDVSDLSQSA LNACNLLDSN+EKILSIDEIMASICSDRRKKPGK
Sbjct: 240 IGFVLMEHLKGELRTSDVSDLSQSA-LNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 299

Query: 121 RPRK 125
           RP++
Sbjct: 300 RPQE 302

[Close]

BLAST of MELO3C015565T1 vs. NCBI nr
Match: gi|778682197|ref|XP_011651668.1| (PREDICTED: uncharacterized protein LOC101210446 isoform X2 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 3.2e-54
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 1


Query: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60
           MEEANEILKN R+E ISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDL+TLRA
Sbjct: 1   MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLRTLRA 60

Query: 61  IGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGK 120
           IGFVLMEHLKG+LRTSDVSDLSQS T NACNLLDSN+EKILSIDEIMASICSDRRKKPGK
Sbjct: 61  IGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 120

Query: 121 RPRK 125
           R R+
Sbjct: 121 RSRE 123

The following BLAST results are available for this feature:

BLAST of MELO3C015565T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW48_CUCSA	1.7e-54	91.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166940 PE=4 SV=1	[more]
A0A0A0LBP9_CUCSA	2.2e-54	91.94	Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_3G633280 PE=3 SV=1	[more]
M1BX27_SOLTU	4.7e-28	54.84	Gamma-tubulin complex component OS=Solanum tuberosum GN=PGSC0003DMG400021318 PE=...	[more]
A0A0V0HHC0_SOLCH	8.0e-28	54.03	Gamma-tubulin complex component OS=Solanum chacoense PE=3 SV=1	[more]
K4AST4_SOLLC	2.3e-27	55.74	Gamma-tubulin complex component OS=Solanum lycopersicum PE=3 SV=1	[more]

BLAST of MELO3C015565T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80245.1	4.5e-30	49.61	Spc97 / Spc98 family of spindle pole body (SBP) component	[more]
AT4G00695.3	3.0e-26	49.61	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of MELO3C015565T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100239\|ref\|XP_008450997.1\|	2.1e-61	100.00	PREDICTED: uncharacterized protein LOC103492413 [Cucumis melo]	[more]
gi\|659120858\|ref\|XP_008460383.1\|	1.4e-54	91.94	PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo]	[more]
gi\|778692248\|ref\|XP_011653427.1\|	2.5e-54	91.94	PREDICTED: uncharacterized protein LOC105435221 [Cucumis sativus]	[more]
gi\|700198692\|gb\|KGN53850.1\|	2.5e-54	91.94	hypothetical protein Csa_4G166940 [Cucumis sativus]	[more]
gi\|778682197\|ref\|XP_011651668.1\|	3.2e-54	91.94	PREDICTED: uncharacterized protein LOC101210446 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007259	GCP

Vocabulary: **Biological Process**
Term	Definition
GO:0000226	microtubule cytoskeleton organization
GO:0007020	microtubule nucleation

Vocabulary: **Cellular Component**
Term	Definition
GO:0000922	spindle pole
GO:0005815	microtubule organizing center

Vocabulary: **Molecular Function**
Term	Definition
GO:0043015	gamma-tubulin binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0000922	spindle pole
cellular_component	GO:0005840	ribosome
cellular_component	GO:0045298	tubulin complex
molecular_function	GO:0043015	gamma-tubulin binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C015565	MELO3C015565	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C015565T1	MELO3C015565T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C015565T1.cds4	MELO3C015565T1.cds4	CDS
MELO3C015565T1.cds3	MELO3C015565T1.cds3	CDS
MELO3C015565T1.cds2	MELO3C015565T1.cds2	CDS
MELO3C015565T1.cds1	MELO3C015565T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007259	Gamma-tubulin complex component protein	PANTHER	PTHR19302	GAMMA TUBULIN COMPLEX PROTEIN	coord: 26..116 score: 1.4
None	No IPR available	PANTHER	PTHR19302:SF39	SUBFAMILY NOT NAMED	coord: 26..116 score: 1.4