MELO3C015461T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015461T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Embryo defective 2752
Location	chr2 : 1896058 .. 1897728 (-)
Sequence length	632

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAGAAAGCTGATCCATTTCTCATCCTTCATTGGGCTTTCTTTTTTTCTCCCTTCTCCTCTTAACAAACCTTTCCATTGCTGATTCCTCCGCCGCCTCCGCCACTGAAGACAGTAACCGCCAATTCTTCAACTGTTTCCGTTTTCCTTTAAATATCATTTTATTCGAACGATTCAATCGCCAATTGCGCCAAAATGGCGAGTTATTTATGGAGGAAGTACGCCGATTATCTCTACACCAAATGGGAAAAAACGCTTCTCTGGGATATGATCGATCCCTATAGACGACCTAAATCCTTTACGCCTTTGGTTTCCATATATATTGCTGCTTTTTACACTGGTGTCGTCGGCGCTGCCATTACCGAGCAACTCTATAAGGTCGTTTCTTTGTTGTTTCGTTTCTGTTCCTTCTCGTTCTATTTGTTGTTTAACTTGAGCATGTTTATGTAATTGAAGTTTTTTTTTTTATTCTGTTTGATTGATGAATTGAGCGGATTCAAATAGAAGAAAGATTGGTTGTTTTTCATATTTTGTTCACTTCTTTAATTTGTGACAGAATAATGCCCCCAATTAGAAGAATTTTAAGTTAAGTATTAAAATCCCAAAACGAGCTTAGTTGAACATCAATCGACATATTTTCACTCGATTGAGGTTGGAGGTTCATCTCAAAAATGGGTTAAGTTGCAAATTTGGTTTTCATGGTTCAAAAGAAAGTTGGAATATAAATTTTGAGGTTTTATCAAACCATAAAGACTAAATTCTAACTTTACTATAGGAACTAAACTCTAATTTTCTCCACAAACCATAGGGAGCAAATTTGTAATTTAACTTTAAAAAAATGTTTAAAACATTGAAAACGAAAAGGATTGGTACTAAATTAGAGACGGAGTTACGGTATAATAGTAAAGTTTATAGATATGAGGAGGGGTTGTGAGAGGTGCTTAGGCTTAATGGTTTGTTATGGCTCATGTGGTTAAGATTCTCTCTCTCTCTCTCTCTCTTAATTATTATTTTGTTTTAATTTTTTAAATGTTGTTCTTCCTTGTAGTTCATTGGACTCCTCTTTTCGTGGGACTATTCTATTTTGTATTTTCTTTAATTTATTAAGAATGTATATTTGATTTTTGAAGCTTGGTTTCTTATCAAAAAAAAAAAAATGAAAATGAAATATTGTTTGAACCATGTCTTATCACCATTTTAGGAAGATAAAGGCACTTTGAAACATGTCTTATGATCATTTAACATCAATTTAATGTTGGATTTTACATTAGTCTTGATTTCGAATGATTTAAAATACATTTTAGATTGATTTTGAAACATGAAAATAGTGATTTTTGCAATTCAAATCACTTCCAAACATTCCCTAAAGCAACATTTGTGCTACCTATATCAACCGAATCCTTGCTAAAATGTGCAGGAAAAGTATTGGGAAGATCATCCCGGGGAAGCTGTTCCATTAATGAAACCAAAATTTTATACTGGACCTTGGAGGGTAATGAGAGGAGAAGTCCCTGCACACACGAAGTGAAAGCTTTAGCACTCGCCCTTCTCTTCCATGATGATACTGGAAACATATTGTAGAAAGTTAATGACCGAGCATTTGCTGTTTGCTCAAGAAATTGGTACGATTATCAATAATAATTCATATTTCTTGTTTTCATTGTTGAATCT

mRNA sequence

AAGAAGAAAGCTGATCCATTTCTCATCCTTCATTGGGCTTTCTTTTTTTCTCCCTTCTCCTCTTAACAAACCTTTCCATTGCTGATTCCTCCGCCGCCTCCGCCACTGAAGACAGTAACCGCCAATTCTTCAACTGTTTCCGTTTTCCTTTAAATATCATTTTATTCGAACGATTCAATCGCCAATTGCGCCAAAATGGCGAGTTATTTATGGAGGAAGTACGCCGATTATCTCTACACCAAATGGGAAAAAACGCTTCTCTGGGATATGATCGATCCCTATAGACGACCTAAATCCTTTACGCCTTTGGTTTCCATATATATTGCTGCTTTTTACACTGGTGTCGTCGGCGCTGCCATTACCGAGCAACTCTATAAGGAAAAGTATTGGGAAGATCATCCCGGGGAAGCTGTTCCATTAATGAAACCAAAATTTTATACTGGACCTTGGAGGGTAATGAGAGGAGAAGTCCCTGCACACACGAAGTGAAAGCTTTAGCACTCGCCCTTCTCTTCCATGATGATACTGGAAACATATTGTAGAAAGTTAATGACCGAGCATTTGCTGTTTGCTCAAGAAATTGGTACGATTATCAATAATAATTCATATTTCTTGTTTTCATTGTTGAATCT

Coding sequence (CDS)

ATGGCGAGTTATTTATGGAGGAAGTACGCCGATTATCTCTACACCAAATGGGAAAAAACGCTTCTCTGGGATATGATCGATCCCTATAGACGACCTAAATCCTTTACGCCTTTGGTTTCCATATATATTGCTGCTTTTTACACTGGTGTCGTCGGCGCTGCCATTACCGAGCAACTCTATAAGGAAAAGTATTGGGAAGATCATCCCGGGGAAGCTGTTCCATTAATGAAACCAAAATTTTATACTGGACCTTGGAGGGTAATGAGAGGAGAAGTCCCTGCACACACGAAGTGA

Protein sequence

MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLYKEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK*

Homology

[Close]

BLAST of MELO3C015461T1 vs. Swiss-Prot
Match: Y4966_ARATH (Uncharacterized protein At4g29660 OS=Arabidopsis thaliana GN=EMB2752 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-37
Identity = 66/92 (71.74%), Postives = 78/92 (84.78%), Query Frame = 1


Query: 3  SYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLYKE 62
          S LWRKYADY Y K+E+  +W+MI+PYRRPK+FT L++IY+AAFYTGV+GAA+TEQLYKE
Sbjct: 6  SQLWRKYADYKYNKFERFAVWEMIEPYRRPKTFTTLITIYVAAFYTGVIGAAVTEQLYKE 65

Query: 63 KYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPA 95
          K+WE+HPG+ VPLMKP FY GPWRV RGE  A
Sbjct: 66 KFWEEHPGKTVPLMKPVFYRGPWRVYRGEAIA 97

[Close]

BLAST of MELO3C015461T1 vs. TrEMBL
Match: A0A0A0M1X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G587420 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.2e-52
Identity = 95/97 (97.94%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYL+TKWEKTLLWDM+DPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLFTKWEKTLLWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK 97

[Close]

BLAST of MELO3C015461T1 vs. TrEMBL
Match: A0A067KFR3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07394 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.0e-47
Identity = 84/93 (90.32%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYA+YLYTKWE+T+LWDMIDPYRRPKSFTPLV+IYIAAFYTGV+G+AITEQLY
Sbjct: 1  MASYLWRKYAEYLYTKWERTILWDMIDPYRRPKSFTPLVTIYIAAFYTGVIGSAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVP 94
          KEKYWEDHPGEAVPLMKPKFY+GPW+V+RGEVP
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYSGPWKVLRGEVP 93

[Close]

BLAST of MELO3C015461T1 vs. TrEMBL
Match: B9I561_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01650g PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 6.6e-46
Identity = 80/92 (86.96%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 2  ASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLYK 61
          ASYLWRKYADYLYTKWE+T+LWDMI+PYRRPKSFTPLV+IY+AAFYTGV+G+A+TEQLYK
Sbjct: 3  ASYLWRKYADYLYTKWERTILWDMIEPYRRPKSFTPLVTIYVAAFYTGVIGSALTEQLYK 62

Query: 62 EKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVP 94
          EKYWEDHPGEAVPLMKPKFY+GPW+++RGEVP
Sbjct: 63 EKYWEDHPGEAVPLMKPKFYSGPWKILRGEVP 94

[Close]

BLAST of MELO3C015461T1 vs. TrEMBL
Match: B9RK94_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1047700 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.3e-45
Identity = 80/93 (86.02%), Postives = 91/93 (97.85%), Query Frame = 1


Query: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          M SYLWRKYADY+YTKWE+TLLWDMI+PYRRPKSFTPL++IYIAAFYTGVV +AITEQLY
Sbjct: 1  MTSYLWRKYADYVYTKWERTLLWDMIEPYRRPKSFTPLITIYIAAFYTGVVASAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVP 94
          KEKYWE+HPGEAVPLMKPKFY+GPW+++RGEVP
Sbjct: 61 KEKYWEEHPGEAVPLMKPKFYSGPWKILRGEVP 93

[Close]

BLAST of MELO3C015461T1 vs. TrEMBL
Match: A0A068U6F7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041674001 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 9.6e-45
Identity = 83/97 (85.57%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYLY KWEKT+LWDM++ YRRPKSFTPLV++YI AFYTGV+G+AITEQLY
Sbjct: 1  MASYLWRKYADYLYYKWEKTILWDMLELYRRPKSFTPLVTLYIFAFYTGVIGSAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFY GPWRVMRGEVP   K
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYGGPWRVMRGEVPPSIK 97

[Close]

BLAST of MELO3C015461T1 vs. TAIR10
Match: AT4G29660.1 (AT4G29660.1 embryo defective 2752)

HSP 1 Score: 155.6 bits (392), Expect = 1.6e-38
Identity = 66/92 (71.74%), Postives = 78/92 (84.78%), Query Frame = 1


Query: 3  SYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLYKE 62
          S LWRKYADY Y K+E+  +W+MI+PYRRPK+FT L++IY+AAFYTGV+GAA+TEQLYKE
Sbjct: 6  SQLWRKYADYKYNKFERFAVWEMIEPYRRPKTFTTLITIYVAAFYTGVIGAAVTEQLYKE 65

Query: 63 KYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPA 95
          K+WE+HPG+ VPLMKP FY GPWRV RGE  A
Sbjct: 66 KFWEEHPGKTVPLMKPVFYRGPWRVYRGEAIA 97

[Close]

BLAST of MELO3C015461T1 vs. NCBI nr
Match: gi|659099933|ref|XP_008450847.1| (PREDICTED: uncharacterized protein At4g29660 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 2.3e-52
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK 97

[Close]

BLAST of MELO3C015461T1 vs. NCBI nr
Match: gi|449435850|ref|XP_004135707.1| (PREDICTED: uncharacterized protein At4g29660 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 8.9e-52
Identity = 95/97 (97.94%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYL+TKWEKTLLWDM+DPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLFTKWEKTLLWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK 97

[Close]

BLAST of MELO3C015461T1 vs. NCBI nr
Match: gi|747091938|ref|XP_011093718.1| (PREDICTED: uncharacterized protein At4g29660 [Sesamum indicum])

HSP 1 Score: 194.9 bits (494), Expect = 6.6e-47
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 1


Query: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYL+TKWEKTLLWDMI+PYRRPKSFTPLV+IYI AFYTGV+GAAITEQLY
Sbjct: 1  MASYLWRKYADYLHTKWEKTLLWDMIEPYRRPKSFTPLVTIYICAFYTGVIGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFY GPWRVMRG+VP   K
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYGGPWRVMRGDVPPFIK 97

[Close]

BLAST of MELO3C015461T1 vs. NCBI nr
Match: gi|802627983|ref|XP_012076909.1| (PREDICTED: uncharacterized protein At4g29660 [Jatropha curcas])

HSP 1 Score: 194.5 bits (493), Expect = 8.6e-47
Identity = 84/93 (90.32%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYA+YLYTKWE+T+LWDMIDPYRRPKSFTPLV+IYIAAFYTGV+G+AITEQLY
Sbjct: 1  MASYLWRKYAEYLYTKWERTILWDMIDPYRRPKSFTPLVTIYIAAFYTGVIGSAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVP 94
          KEKYWEDHPGEAVPLMKPKFY+GPW+V+RGEVP
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYSGPWKVLRGEVP 93

[Close]

BLAST of MELO3C015461T1 vs. NCBI nr
Match: gi|224118204|ref|XP_002317757.1| (hypothetical protein POPTR_0012s01650g [Populus trichocarpa])

HSP 1 Score: 191.0 bits (484), Expect = 9.5e-46
Identity = 80/92 (86.96%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 2  ASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLYK 61
          ASYLWRKYADYLYTKWE+T+LWDMI+PYRRPKSFTPLV+IY+AAFYTGV+G+A+TEQLYK
Sbjct: 3  ASYLWRKYADYLYTKWERTILWDMIEPYRRPKSFTPLVTIYVAAFYTGVIGSALTEQLYK 62

Query: 62 EKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVP 94
          EKYWEDHPGEAVPLMKPKFY+GPW+++RGEVP
Sbjct: 63 EKYWEDHPGEAVPLMKPKFYSGPWKILRGEVP 94

The following BLAST results are available for this feature:

BLAST of MELO3C015461T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4966_ARATH	2.8e-37	71.74	Uncharacterized protein At4g29660 OS=Arabidopsis thaliana GN=EMB2752 PE=4 SV=1	[more]

BLAST of MELO3C015461T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1X3_CUCSA	6.2e-52	97.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G587420 PE=4 SV=1	[more]
A0A067KFR3_JATCU	6.0e-47	90.32	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07394 PE=4 SV=1	[more]
B9I561_POPTR	6.6e-46	86.96	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01650g PE=4 SV=1	[more]
B9RK94_RICCO	4.3e-45	86.02	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1047700 PE=4 SV=1	[more]
A0A068U6F7_COFCA	9.6e-45	85.57	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041674001 PE=4 SV=1	[more]

BLAST of MELO3C015461T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29660.1	1.6e-38	71.74	embryo defective 2752	[more]

BLAST of MELO3C015461T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099933\|ref\|XP_008450847.1\|	2.3e-52	100.00	PREDICTED: uncharacterized protein At4g29660 [Cucumis melo]	[more]
gi\|449435850\|ref\|XP_004135707.1\|	8.9e-52	97.94	PREDICTED: uncharacterized protein At4g29660 [Cucumis sativus]	[more]
gi\|747091938\|ref\|XP_011093718.1\|	6.6e-47	89.69	PREDICTED: uncharacterized protein At4g29660 [Sesamum indicum]	[more]
gi\|802627983\|ref\|XP_012076909.1\|	8.6e-47	90.32	PREDICTED: uncharacterized protein At4g29660 [Jatropha curcas]	[more]
gi\|224118204\|ref\|XP_002317757.1\|	9.5e-46	86.96	hypothetical protein POPTR_0012s01650g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C015461	MELO3C015461	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C015461T1	MELO3C015461T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C015461T1.cds2	MELO3C015461T1.cds2	CDS
MELO3C015461T1.cds1	MELO3C015461T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37898	FAMILY NOT NAMED	coord: 1..93 score: 9.9