MELO3C015070T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C015070T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description30S ribosomal protein S10
Locationchr2 : 8032789 .. 8033163 (-)
Sequence length375
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTTTTCATTACTACGAGTGCTAATAGAGTGCAAGAATCTAACGATATTTCTAGTAATCCCCATGACCCTGTTGGGCAAAACGCAGAGGAAAGAATGTTTGACCGCTTTGCTCAAAGATTGGTTGATTGCTTTATGCCTACCACTTCCACTGTAGATAAGAGACTTCGCATTGAAATATTGAAGGCATTGGAGGCAATGACCTTTGAAGGAACAACAAACCCAACTGATGCGAAAAAGTGGTTAAGTTTGATAGAAAACAAAATTCGGGTGATGGAGTGCCCTAAAGACAAGAAAGTGAAGTTAGCTTTCTGTTGCAAGGTAGTGCTGAAGACTAATGGACTCTTCATACAGCAAAAATTGAAGGAATAA

mRNA sequence

ATGGGTGTTTTCATTACTACGAGTGCTAATAGAGTGCAAGAATCTAACGATATTTCTAGTAATCCCCATGACCCTGTTGGGCAAAACGCAGAGGAAAGAATGTTTGACCGCTTTGCTCAAAGATTGGTTGATTGCTTTATGCCTACCACTTCCACTGTAGATAAGAGACTTCGCATTGAAATATTGAAGGCATTGGAGGCAATGACCTTTGAAGGAACAACAAACCCAACTGATGCGAAAAAGTGGTTAAGTTTGATAGAAAACAAAATTCGGGTGATGGAGTGCCCTAAAGACAAGAAAGTGAAGTTAGCTTTCTGTTGCAAGGTAGTGCTGAAGACTAATGGACTCTTCATACAGCAAAAATTGAAGGAATAA

Coding sequence (CDS)

ATGGGTGTTTTCATTACTACGAGTGCTAATAGAGTGCAAGAATCTAACGATATTTCTAGTAATCCCCATGACCCTGTTGGGCAAAACGCAGAGGAAAGAATGTTTGACCGCTTTGCTCAAAGATTGGTTGATTGCTTTATGCCTACCACTTCCACTGTAGATAAGAGACTTCGCATTGAAATATTGAAGGCATTGGAGGCAATGACCTTTGAAGGAACAACAAACCCAACTGATGCGAAAAAGTGGTTAAGTTTGATAGAAAACAAAATTCGGGTGATGGAGTGCCCTAAAGACAAGAAAGTGAAGTTAGCTTTCTGTTGCAAGGTAGTGCTGAAGACTAATGGACTCTTCATACAGCAAAAATTGAAGGAATAA

Protein sequence

MGVFITTSANRVQESNDISSNPHDPVGQNAEERMFDRFAQRLVDCFMPTTSTVDKRLRIEILKALEAMTFEGTTNPTDAKKWLSLIENKIRVMECPKDKKVKLAFCCKVVLKTNGLFIQQKLKE*
Homology
[Close]
BLAST of MELO3C015070T1 vs. TrEMBL
Match: A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.2e-08
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1 

Query: 31  EERMFDRFAQRLVDCFMPTTSTVDKRLRIEILKALEAMTFEGTTNPTDAKKWLSLIENKI 90
           EE ++DRFAQRL++        + K   IE +KAL A  F G  N  +A+KW+  +E   
Sbjct: 21  EEALYDRFAQRLINAL---AQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCF 80

Query: 91  RVMECPKDKKVKLA 105
           RVM+CPK+++V LA
Sbjct: 81  RVMQCPKERRVNLA 91

[Close]
BLAST of MELO3C015070T1 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-14
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1 

Query: 14  ESNDISSNPHDPVGQNAEERMFDRFAQRLVDCFMPTTSTVDKRLRIEILKALEAMTFEGT 73
           ES+  SS PH  V  N EE++ DR AQRL+       S  +K+  IE LKAL A TF GT
Sbjct: 46  ESDAESSRPH--VEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGT 105

Query: 74  TNPTDAKKWLSLIENKIRVMECPKDKKVKLA 105
           TNP DA+ WL+LIE   RV  CP+D+KV+LA
Sbjct: 106 TNPADAEAWLTLIEKCFRVTRCPEDRKVELA 134

[Close]
BLAST of MELO3C015070T1 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 6.1e-13
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 1 

Query: 8   SANRVQESNDISSNPHDPVGQNAEERMFDRFAQRLVDCFMPTTSTVDKRLRIEILKALEA 67
           +A   +E +  SS PH  V  N EE++ DR AQR V     T S ++K+  IE LKAL +
Sbjct: 21  AAMESEEPDAESSRPH--VEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGS 80

Query: 68  MTFEGTTNPTDAKKWLSLIENKIRVMECPKDKKVKLA 105
            TF  TTNP +A+ WL+LIE   RVM C +D+KV+L+
Sbjct: 81  TTFARTTNPANAEAWLTLIEKCFRVMRCSEDRKVELS 115

[Close]
BLAST of MELO3C015070T1 vs. NCBI nr
Match: gi|700206416|gb|KGN61535.1| (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-07
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1 

Query: 31  EERMFDRFAQRLVDCFMPTTSTVDKRLRIEILKALEAMTFEGTTNPTDAKKWLSLIENKI 90
           EE ++DRFAQRL++        + K   IE +KAL A  F G  N  +A+KW+  +E   
Sbjct: 21  EEALYDRFAQRLINAL---AQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCF 80

Query: 91  RVMECPKDKKVKLA 105
           RVM+CPK+++V LA
Sbjct: 81  RVMQCPKERRVNLA 91

[Close]
BLAST of MELO3C015070T1 vs. NCBI nr
Match: gi|659087174|ref|XP_008444312.1| (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 1 

Query: 25  PVGQN-AEERMFDRFAQRLVDCFMPTTSTVDKRLRIEILKALEAMTFEGTTNPTDAKKWL 84
           P GQN      F R AQ +        S +DK   IE LK L A  F+G+T+P DA+ WL
Sbjct: 16  PRGQNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQGSTDPADAEVWL 75

Query: 85  SLIENKIRVMECPKDKKVKLA 105
           +++E    VM CP+++KV+LA
Sbjct: 76  NMLEKCFDVMSCPQEQKVRLA 96

[Close]
BLAST of MELO3C015070T1 vs. NCBI nr
Match: gi|659098594|ref|XP_008450217.1| (PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-06
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 55  KRLRIEILKALEAMTFEGTTNPTDAKKWLSLIENKIRVMECPKDKKVKLA 105
           K+  I+ LKA+  MTFEGTT P++AK+W++L+E    V+E PK++KVKLA
Sbjct: 50  KQFSIKRLKAVRVMTFEGTTYPSNAKRWMNLVEKCFGVLEWPKERKVKLA 99

The following BLAST results are available for this feature:
BLAST of MELO3C015070T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI31_CUCSA9.2e-0843.24Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1[more]
BLAST of MELO3C015070T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072264|ref|XP_008464580.1|1.9e-1452.75PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|659068829|ref|XP_008446512.1|6.1e-1346.39PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
gi|700206416|gb|KGN61535.1|1.3e-0743.24hypothetical protein Csa_2G163160 [Cucumis sativus][more]
gi|659087174|ref|XP_008444312.1|2.5e-0641.98PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
gi|659098594|ref|XP_008450217.1|3.2e-0654.00PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C015070MELO3C015070gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C015070T1MELO3C015070T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C015070T1.cds1MELO3C015070T1.cds1CDS