MELO3C014934T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C014934T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionQueuine tRNA-ribosyltransferase
Locationchr6 : 23027693 .. 23028196 (+)
Sequence length504
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCAAACAACAGAGGACAGCCGCCAGTTTTAGTACTGTTGTTGTTGTCGTCTTTGATGCTTGGATCAACGCTACGATGAAAAAATGGATCCGCCACATTCAGAAAACACCGAGAAACATAATTCTGCATAATTTCTCATCGTCCAAGCCCACCAGAAACCAGCGACACGCCGTCGTTGGAAGTCCACACACCACTATCAGAGCTAACGCGCAGGCCCATCTTGTTAAGACGTTGTCAGCCGACCTAACTGTGCCACCCACGTCTTCATCTGTGGCTTGTAGTGTCCCCCACGTGCCGATTCATGTGCTATCACCTAGTTCCAACCGGCCACCACCGCTTCTGCAGTCAAATTCGTATGTCCTGCCACCCACTGACCTTAGTTATCATCTTGATGTTAAGAACCCTCAAATTCACTCAATGTTTAAAGTTGGTAAACCTTGGGCACATTCCAACCCTAACGTGCAAGCTTCCTCTTCTTTGAGAATATCTCAACAGTAA

mRNA sequence

ATGGAAATCAAACAACAGAGGACAGCCGCCAGTTTTAGTACTGTTGTTGTTGTCGTCTTTGATGCTTGGATCAACGCTACGATGAAAAAATGGATCCGCCACATTCAGAAAACACCGAGAAACATAATTCTGCATAATTTCTCATCGTCCAAGCCCACCAGAAACCAGCGACACGCCGTCGTTGGAAGTCCACACACCACTATCAGAGCTAACGCGCAGGCCCATCTTGTTAAGACGTTGTCAGCCGACCTAACTGTGCCACCCACGTCTTCATCTGTGGCTTGTAGTGTCCCCCACGTGCCGATTCATGTGCTATCACCTAGTTCCAACCGGCCACCACCGCTTCTGCAGTCAAATTCGTATGTCCTGCCACCCACTGACCTTAGTTATCATCTTGATGTTAAGAACCCTCAAATTCACTCAATGTTTAAAGTTGGTAAACCTTGGGCACATTCCAACCCTAACGTGCAAGCTTCCTCTTCTTTGAGAATATCTCAACAGTAA

Coding sequence (CDS)

ATGGAAATCAAACAACAGAGGACAGCCGCCAGTTTTAGTACTGTTGTTGTTGTCGTCTTTGATGCTTGGATCAACGCTACGATGAAAAAATGGATCCGCCACATTCAGAAAACACCGAGAAACATAATTCTGCATAATTTCTCATCGTCCAAGCCCACCAGAAACCAGCGACACGCCGTCGTTGGAAGTCCACACACCACTATCAGAGCTAACGCGCAGGCCCATCTTGTTAAGACGTTGTCAGCCGACCTAACTGTGCCACCCACGTCTTCATCTGTGGCTTGTAGTGTCCCCCACGTGCCGATTCATGTGCTATCACCTAGTTCCAACCGGCCACCACCGCTTCTGCAGTCAAATTCGTATGTCCTGCCACCCACTGACCTTAGTTATCATCTTGATGTTAAGAACCCTCAAATTCACTCAATGTTTAAAGTTGGTAAACCTTGGGCACATTCCAACCCTAACGTGCAAGCTTCCTCTTCTTTGAGAATATCTCAACAGTAA

Protein sequence

MEIKQQRTAASFSTVVVVVFDAWINATMKKWIRHIQKTPRNIILHNFSSSKPTRNQRHAVVGSPHTTIRANAQAHLVKTLSADLTVPPTSSSVACSVPHVPIHVLSPSSNRPPPLLQSNSYVLPPTDLSYHLDVKNPQIHSMFKVGKPWAHSNPNVQASSSLRISQQ*
Homology
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BLAST of MELO3C014934T1 vs. NCBI nr
Match: gi|778688605|ref|XP_004149788.2| (PREDICTED: kirola-like [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-08
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 1 

Query: 91  SSVACSVPHVPIHVLSPSSNRPPPLLQSNSYVLPPTDLSYHLDVKNPQIHSMFKV 146
           S  A   PH  I+VL P+  +PPPLL SN Y +PP D SYH DVKNPQ HS F+V
Sbjct: 156 SKQAYIAPHTRIYVLPPNFGQPPPLLPSNLYAMPPIDPSYHPDVKNPQNHSTFEV 210

The following BLAST results are available for this feature:
BLAST of MELO3C014934T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688605|ref|XP_004149788.2|2.1e-0858.18PREDICTED: kirola-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C014934MELO3C014934gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C014934T1MELO3C014934T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C014934T1.cds1MELO3C014934T1.cds1CDS