MELO3C013041T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013041T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Dentin sialophosphoprotein-like protein
Location	chr4 : 16419221 .. 16419601 (-)
Sequence length	381

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGGCGGCCCATCCAAGCTCGGTCGACCTGGCGGCGGTGCCGGCCGTGGACACGGAGGAAAGCGCCCCCACTCCTCTTTTCCTCTACCACCATCTCACCGCCCCTCCGGCCGTCTCTCTCTTGGCGGTGGTGCCGCTGGTTCTGCCTCCAATCCTCGGAATCGAACCACCACCGCAACCACATCCGAAGCCTCTCAATCGACCGAGGAGAATTTCAGTCTCGTTACTGGTAACAACCCCTTGGCTTTTGGTATGATAATTCGGTTGGCTCCGGATTTGATCGATGAGATCAAGCGGGTTGAGGCGCAAGGCGGGACTCCGAGGATTAAGTTTGATGCCATCGCCAATAATTCTAGTGGTAATGTAAGTTTTCTATAA

mRNA sequence

ATGTACGGCGGCCCATCCAAGCTCGGTCGACCTGGCGGCGGTGCCGGCCGTGGACACGGAGGAAAGCGCCCCCACTCCTCTTTTCCTCTACCACCATCTCACCGCCCCTCCGGCCGTCTCTCTCTTGGCGGTGGTGCCGCTGGTTCTGCCTCCAATCCTCGGAATCGAACCACCACCGCAACCACATCCGAAGCCTCTCAATCGACCGAGGAGAATTTCAGTCTCGTTACTGGTAACAACCCCTTGGCTTTTGGTATGATAATTCGGTTGGCTCCGGATTTGATCGATGAGATCAAGCGGGTTGAGGCGCAAGGCGGGACTCCGAGGATTAAGTTTGATGCCATCGCCAATAATTCTAGTGGTAATGTAAGTTTTCTATAA

Coding sequence (CDS)

ATGTACGGCGGCCCATCCAAGCTCGGTCGACCTGGCGGCGGTGCCGGCCGTGGACACGGAGGAAAGCGCCCCCACTCCTCTTTTCCTCTACCACCATCTCACCGCCCCTCCGGCCGTCTCTCTCTTGGCGGTGGTGCCGCTGGTTCTGCCTCCAATCCTCGGAATCGAACCACCACCGCAACCACATCCGAAGCCTCTCAATCGACCGAGGAGAATTTCAGTCTCGTTACTGGTAACAACCCCTTGGCTTTTGGTATGATAATTCGGTTGGCTCCGGATTTGATCGATGAGATCAAGCGGGTTGAGGCGCAAGGCGGGACTCCGAGGATTAAGTTTGATGCCATCGCCAATAATTCTAGTGGTAATGTAAGTTTTCTATAA

Protein sequence

MYGGPSKLGRPGGGAGRGHGGKRPHSSFPLPPSHRPSGRLSLGGGAAGSASNPRNRTTTATTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDAIANNSSGNVSFL*

Homology

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BLAST of MELO3C013041T1 vs. TrEMBL
Match: A0A0A0LCU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G849910 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-61
Identity = 119/123 (96.75%), Postives = 119/123 (96.75%), Query Frame = 1


Query: 1   MYGGPSKLGRPGGGAGRGHGGKRPHSSFPLPPSHRPSGRLSLGGGAAGSASNPRNRTTTA 60
           MYGGPSKLGRPGGGAGRGH GKRPHSSFPLPPSHRPSGRLSLGGGAAGS SNPRNRTTTA
Sbjct: 1   MYGGPSKLGRPGGGAGRGHAGKRPHSSFPLPPSHRPSGRLSLGGGAAGSVSNPRNRTTTA 60

Query: 61  TTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDAIANNSS 120
           TTSEASQS EENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDA ANNSS
Sbjct: 61  TTSEASQSAEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDANANNSS 120

Query: 121 GNV 124
           GNV
Sbjct: 121 GNV 123

[Close]

BLAST of MELO3C013041T1 vs. TrEMBL
Match: W9QQE3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008115 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.8e-33
Identity = 83/129 (64.34%), Postives = 96/129 (74.42%), Query Frame = 1


Query: 1   MYGGPSKLGRPGGG-AGRGHGGKRPHSSFPLPPSHRPSG-----RLSLGGGAAGSASNPR 60
           MYGG SKLGR GGG AGRG G KR  SSFP+ P HRPS      RL LGG  +GS++NPR
Sbjct: 1   MYGGSSKLGRGGGGGAGRGAGAKRLSSSFPMMPPHRPSAPGGASRLPLGG--SGSSANPR 60

Query: 61  NRTTTATTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDA 120
           +R +      A+  TEE FSLV+GNNPLAF MIIRLAPDL+DEI+R+EAQG T RIKFD 
Sbjct: 61  SRVSGLKAPAAAPGTEETFSLVSGNNPLAFAMIIRLAPDLVDEIRRLEAQGRTTRIKFD- 120

Query: 121 IANNSSGNV 124
            +NNS+GNV
Sbjct: 121 -SNNSNGNV 125

[Close]

BLAST of MELO3C013041T1 vs. TrEMBL
Match: F6HY36_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02510 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32
Identity = 88/130 (67.69%), Postives = 94/130 (72.31%), Query Frame = 1


Query: 1   MYGGPSKLGRPGGGAGRGHGGKRP-HSSFPLPPSHRPS---GRLSLGG-GAAGSASNPRN 60
           MYGGP+KLGR G   G   GGKR  HSSFP PP HRPS    RLS+GG G AG    PRN
Sbjct: 1   MYGGPAKLGRGGSAVGGRGGGKRGIHSSFPPPPPHRPSVPASRLSVGGAGGAG----PRN 60

Query: 61  RTTT--ATTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFD 120
           R T   ATT     ++EE FSLVTGN PLAF MIIRLAPDL+DEIKRVEAQGGT RIKFD
Sbjct: 61  RATNSGATTPAHLPASEETFSLVTGN-PLAFAMIIRLAPDLVDEIKRVEAQGGTARIKFD 120

Query: 121 AIANNSSGNV 124
           + ANN SGNV
Sbjct: 121 SNANNPSGNV 125

[Close]

BLAST of MELO3C013041T1 vs. TrEMBL
Match: A5APE0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043643 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32
Identity = 88/130 (67.69%), Postives = 94/130 (72.31%), Query Frame = 1


Query: 1   MYGGPSKLGRPGGGAGRGHGGKRP-HSSFPLPPSHRPS---GRLSLGG-GAAGSASNPRN 60
           MYGGP+KLGR G   G   GGKR  HSSFP PP HRPS    RLS+GG G AG    PRN
Sbjct: 78  MYGGPAKLGRGGSAVGGRGGGKRGIHSSFPPPPPHRPSVPASRLSVGGAGGAG----PRN 137

Query: 61  RTTT--ATTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFD 120
           R T   ATT     ++EE FSLVTGN PLAF MIIRLAPDL+DEIKRVEAQGGT RIKFD
Sbjct: 138 RATNSGATTPAHLPASEETFSLVTGN-PLAFAMIIRLAPDLVDEIKRVEAQGGTARIKFD 197

Query: 121 AIANNSSGNV 124
           + ANN SGNV
Sbjct: 198 SNANNPSGNV 202

[Close]

BLAST of MELO3C013041T1 vs. TrEMBL
Match: A0A061GCA0_THECC (Dentin sialophosphoprotein-related, putative isoform 1 OS=Theobroma cacao GN=TCM_028998 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.1e-32
Identity = 80/126 (63.49%), Postives = 90/126 (71.43%), Query Frame = 1


Query: 1   MYGGPSKLGRPGGGAGRGHGGKRPHSSFPLPPSHRPS---GRLSLGGGAAGSASNPRNRT 60
           MYGG SKLGR GGG GRG GG R  SSFP PP HRP+   GRLSLG       S PRNR 
Sbjct: 1   MYGGSSKLGR-GGGGGRGGGGPRNRSSFPPPPPHRPAAPAGRLSLG-------SAPRNRP 60

Query: 61  TTATTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDAIAN 120
                   + + EE+FSLV+GNNPLAF MIIRLAPDL++EI+R+EAQGGT RIKFD+I  
Sbjct: 61  GVGGGLGPAPAVEESFSLVSGNNPLAFAMIIRLAPDLVEEIRRLEAQGGTARIKFDSIPT 118

Query: 121 NSSGNV 124
           N SGNV
Sbjct: 121 NPSGNV 118

[Close]

BLAST of MELO3C013041T1 vs. TAIR10
Match: AT3G21290.1 (AT3G21290.1 dentin sialophosphoprotein-related)

HSP 1 Score: 122.1 bits (305), Expect = 2.5e-28
Identity = 68/131 (51.91%), Postives = 85/131 (64.89%), Query Frame = 1


Query: 1   MYGGPSKLGRPGGGAGRGHGGKRPHSSFPLPPSHRPS--GRLSLGGGAAGSASNPRNRTT 60
           M+ G SK G  GG  G G G  R  +SFP P +  PS  GR+S GGG  GSA+ PR R+ 
Sbjct: 1   MFKGSSKRGGRGGSGGGGSGPSRNRNSFPPPTNRHPSPIGRMSSGGGGGGSAA-PRQRSN 60

Query: 61  T------ATTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKF 120
           +      A+T+ +S++ EE F+LV   +  AFGMIIRL+PDL+DEIKRVEAQGG  +IKF
Sbjct: 61  STSVKAAASTTVSSRTVEETFNLVPRESSSAFGMIIRLSPDLVDEIKRVEAQGGAAKIKF 120

Query: 121 DAIANNSSGNV 124
           DA  NNS+ N+
Sbjct: 121 DAFPNNSTENI 130

[Close]

BLAST of MELO3C013041T1 vs. NCBI nr
Match: gi|659093552|ref|XP_008447590.1| (PREDICTED: dentin sialophosphoprotein isoform X1 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 7.7e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MYGGPSKLGRPGGGAGRGHGGKRPHSSFPLPPSHRPSGRLSLGGGAAGSASNPRNRTTTA 60
           MYGGPSKLGRPGGGAGRGHGGKRPHSSFPLPPSHRPSGRLSLGGGAAGSASNPRNRTTTA
Sbjct: 1   MYGGPSKLGRPGGGAGRGHGGKRPHSSFPLPPSHRPSGRLSLGGGAAGSASNPRNRTTTA 60

Query: 61  TTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDAIANNSS 120
           TTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDAIANNSS
Sbjct: 61  TTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDAIANNSS 120

Query: 121 GNV 124
           GNV
Sbjct: 121 GNV 123

[Close]

BLAST of MELO3C013041T1 vs. NCBI nr
Match: gi|449458241|ref|XP_004146856.1| (PREDICTED: dentin sialophosphoprotein isoform X1 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 2.7e-61
Identity = 119/123 (96.75%), Postives = 119/123 (96.75%), Query Frame = 1


Query: 1   MYGGPSKLGRPGGGAGRGHGGKRPHSSFPLPPSHRPSGRLSLGGGAAGSASNPRNRTTTA 60
           MYGGPSKLGRPGGGAGRGH GKRPHSSFPLPPSHRPSGRLSLGGGAAGS SNPRNRTTTA
Sbjct: 1   MYGGPSKLGRPGGGAGRGHAGKRPHSSFPLPPSHRPSGRLSLGGGAAGSVSNPRNRTTTA 60

Query: 61  TTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDAIANNSS 120
           TTSEASQS EENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDA ANNSS
Sbjct: 61  TTSEASQSAEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDANANNSS 120

Query: 121 GNV 124
           GNV
Sbjct: 121 GNV 123

[Close]

BLAST of MELO3C013041T1 vs. NCBI nr
Match: gi|1009112035|ref|XP_015866284.1| (PREDICTED: dentin sialophosphoprotein [Ziziphus jujuba])

HSP 1 Score: 170.6 bits (431), Expect = 1.7e-39
Identity = 89/128 (69.53%), Postives = 101/128 (78.91%), Query Frame = 1


Query: 1   MYGGPSKLGRPGGGAGRGHGGKRPHSSFPLPPSHRPSG-----RLSLGGGAAGSASNPRN 60
           M+GG SKLGR GG AGRG G KR HSSFPLPP+ RPSG     RLSLGG  +G+A+NPRN
Sbjct: 1   MFGGSSKLGRGGGAAGRGAGAKRLHSSFPLPPTLRPSGPAPPGRLSLGGSGSGAAANPRN 60

Query: 61  RTTTATTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDAI 120
           R    +   A+ S EE FSLV+GNNPLAF MIIRLAPDL+DEIKRVEAQGGT RIKFD++
Sbjct: 61  R---GSGRAAAPSVEETFSLVSGNNPLAFSMIIRLAPDLVDEIKRVEAQGGTARIKFDSM 120

Query: 121 ANNSSGNV 124
           ANN +GNV
Sbjct: 121 ANNPNGNV 125

[Close]

BLAST of MELO3C013041T1 vs. NCBI nr
Match: gi|703068982|ref|XP_010088381.1| (hypothetical protein L484_008115 [Morus notabilis])

HSP 1 Score: 149.1 bits (375), Expect = 5.4e-33
Identity = 83/129 (64.34%), Postives = 96/129 (74.42%), Query Frame = 1


Query: 1   MYGGPSKLGRPGGG-AGRGHGGKRPHSSFPLPPSHRPSG-----RLSLGGGAAGSASNPR 60
           MYGG SKLGR GGG AGRG G KR  SSFP+ P HRPS      RL LGG  +GS++NPR
Sbjct: 1   MYGGSSKLGRGGGGGAGRGAGAKRLSSSFPMMPPHRPSAPGGASRLPLGG--SGSSANPR 60

Query: 61  NRTTTATTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFDA 120
           +R +      A+  TEE FSLV+GNNPLAF MIIRLAPDL+DEI+R+EAQG T RIKFD 
Sbjct: 61  SRVSGLKAPAAAPGTEETFSLVSGNNPLAFAMIIRLAPDLVDEIRRLEAQGRTTRIKFD- 120

Query: 121 IANNSSGNV 124
            +NNS+GNV
Sbjct: 121 -SNNSNGNV 125

[Close]

BLAST of MELO3C013041T1 vs. NCBI nr
Match: gi|147768436|emb|CAN69267.1| (hypothetical protein VITISV_043643 [Vitis vinifera])

HSP 1 Score: 147.1 bits (370), Expect = 2.0e-32
Identity = 88/130 (67.69%), Postives = 94/130 (72.31%), Query Frame = 1


Query: 1   MYGGPSKLGRPGGGAGRGHGGKRP-HSSFPLPPSHRPS---GRLSLGG-GAAGSASNPRN 60
           MYGGP+KLGR G   G   GGKR  HSSFP PP HRPS    RLS+GG G AG    PRN
Sbjct: 78  MYGGPAKLGRGGSAVGGRGGGKRGIHSSFPPPPPHRPSVPASRLSVGGAGGAG----PRN 137

Query: 61  RTTT--ATTSEASQSTEENFSLVTGNNPLAFGMIIRLAPDLIDEIKRVEAQGGTPRIKFD 120
           R T   ATT     ++EE FSLVTGN PLAF MIIRLAPDL+DEIKRVEAQGGT RIKFD
Sbjct: 138 RATNSGATTPAHLPASEETFSLVTGN-PLAFAMIIRLAPDLVDEIKRVEAQGGTARIKFD 197

Query: 121 AIANNSSGNV 124
           + ANN SGNV
Sbjct: 198 SNANNPSGNV 202

The following BLAST results are available for this feature:

BLAST of MELO3C013041T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCU6_CUCSA	1.9e-61	96.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G849910 PE=4 SV=1	[more]
W9QQE3_9ROSA	3.8e-33	64.34	Uncharacterized protein OS=Morus notabilis GN=L484_008115 PE=4 SV=1	[more]
F6HY36_VITVI	1.4e-32	67.69	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02510 PE=4 SV=...	[more]
A5APE0_VITVI	1.4e-32	67.69	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043643 PE=4 SV=1	[more]
A0A061GCA0_THECC	7.1e-32	63.49	Dentin sialophosphoprotein-related, putative isoform 1 OS=Theobroma cacao GN=TCM...	[more]

BLAST of MELO3C013041T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21290.1	2.5e-28	51.91	dentin sialophosphoprotein-related	[more]

BLAST of MELO3C013041T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093552\|ref\|XP_008447590.1\|	7.7e-64	100.00	PREDICTED: dentin sialophosphoprotein isoform X1 [Cucumis melo]	[more]
gi\|449458241\|ref\|XP_004146856.1\|	2.7e-61	96.75	PREDICTED: dentin sialophosphoprotein isoform X1 [Cucumis sativus]	[more]
gi\|1009112035\|ref\|XP_015866284.1\|	1.7e-39	69.53	PREDICTED: dentin sialophosphoprotein [Ziziphus jujuba]	[more]
gi\|703068982\|ref\|XP_010088381.1\|	5.4e-33	64.34	hypothetical protein L484_008115 [Morus notabilis]	[more]
gi\|147768436\|emb\|CAN69267.1\|	2.0e-32	67.69	hypothetical protein VITISV_043643 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006448	regulation of translational elongation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003746	translation elongation factor activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C013041	MELO3C013041	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C013041T1	MELO3C013041T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C013041T1.cds1	MELO3C013041T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38372	FAMILY NOT NAMED	coord: 1..123 score: 1.0