MELO3C012698T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012698T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Phospholipid-translocating ATPase
Location	chr1 : 21740238 .. 21740661 (+)
Sequence length	309

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCACGGGAGCTATTTTAAGGATAACATACATCATTTGGTGAGTAGTGCCATTCCTCCCCCTTCACAACCCAAACTACCCAAGAATCGAGGAAGCAACCTGGGTGGTAAAGAAATTCGTCTAGTTGAGGCGATGGCTACTACTCTCGAAAAGGAGATAAATGAACATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGTATCAGGTGATGATCTCGACGGAAGGGGTTCAAGTGCTTTGGGAGTCCTTAATATTCCACCATTGGTTTGCACATTTTCCTTTCTTAAATTATTTTTTTTTTTTTTTTGTTTTCATCTTCTTCACAAATGACTTATTAATTGTTTGCTTCTGCAGTCGCCTTTGAACGCTCATCTTGAAGGCCTCGTAA

mRNA sequence

ATGAGGCACGGGAGCTATTTTAAGGATAACATACATCATTTGGTGAGTAGTGCCATTCCTCCCCCTTCACAACCCAAACTACCCAAGAATCGAGGAAGCAACCTGGGTGGTAAAGAAATTCGTCTAGTTGAGGCGATGGCTACTACTCTCGAAAAGGAGATAAATGAACATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGTATCAGGTGATGATCTCGACGGAAGGGGTTCAAGTGCTTTGGGAGTCCTTAATATTCCACCATTGGCCTCGTAA

Coding sequence (CDS)

ATGAGGCACGGGAGCTATTTTAAGGATAACATACATCATTTGGTGAGTAGTGCCATTCCTCCCCCTTCACAACCCAAACTACCCAAGAATCGAGGAAGCAACCTGGGTGGTAAAGAAATTCGTCTAGTTGAGGCGATGGCTACTACTCTCGAAAAGGAGATAAATGAACATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGTATCAGGTGATGATCTCGACGGAAGGGGTTCAAGTGCTTTGGGAGTCCTTAATATTCCACCATTGGCCTCGTAA

Protein sequence

MRHGSYFKDNIHHLVSSAIPPPSQPKLPKNRGSNLGGKEIRLVEAMATTLEKEINEHKDESDSSKSDRHWKRPLKKAKVSGDDLDGRGSSALGVLNIPPLAS*

Homology

[Close]

BLAST of MELO3C012698T1 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.7e-32
Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = 1


Query: 2   RHGSYFKDNIHHLVSSAIPPPSQPKLPKNRGSNLGGKEIRLVEAMATTLEKEINEHKDES 61
           +H +YF+DN HHLVSSAI PPSQP+LPKNRGSNLGGKEI LVEAMA  LE+E+ EHKDES
Sbjct: 300 KHMTYFEDNRHHLVSSAISPPSQPRLPKNRGSNLGGKEIGLVEAMAPNLEEEVKEHKDES 359

Query: 62  DSSKSDRHWKRPLKKAKVSGDDLD 86
           DSSKSDRHWKRPLKKAKVSGD  D
Sbjct: 360 DSSKSDRHWKRPLKKAKVSGDHPD 383

[Close]

BLAST of MELO3C012698T1 vs. TrEMBL
Match: A0A0A0KQU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264300 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.7e-07
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 46 MATTLEKEINEHKDESDSSKSDRHWKRPLKKAK 79
          MA TLEK++ EHKDESD++KSDRHWKRPLKKAK
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAK 33

[Close]

BLAST of MELO3C012698T1 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 144.8 bits (364), Expect = 8.2e-32
Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = 1


Query: 2   RHGSYFKDNIHHLVSSAIPPPSQPKLPKNRGSNLGGKEIRLVEAMATTLEKEINEHKDES 61
           +H +YF+DN HHLVSSAI PPSQP+LPKNRGSNLGGKEI LVEAMA  LE+E+ EHKDES
Sbjct: 300 KHMTYFEDNRHHLVSSAISPPSQPRLPKNRGSNLGGKEIGLVEAMAPNLEEEVKEHKDES 359

Query: 62  DSSKSDRHWKRPLKKAKVSGDDLD 86
           DSSKSDRHWKRPLKKAKVSGD  D
Sbjct: 360 DSSKSDRHWKRPLKKAKVSGDHPD 383

[Close]

BLAST of MELO3C012698T1 vs. NCBI nr
Match: gi|700195620|gb|KGN50797.1| (hypothetical protein Csa_5G264300 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 5.4e-07
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 46 MATTLEKEINEHKDESDSSKSDRHWKRPLKKAK 79
          MA TLEK++ EHKDESD++KSDRHWKRPLKKAK
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAK 33

The following BLAST results are available for this feature:

BLAST of MELO3C012698T1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB9_CUCME	5.7e-32	82.14	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KQU9_CUCSA	3.7e-07	81.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264300 PE=4 SV=1	[more]

BLAST of MELO3C012698T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136292\|gb\|ADN34118.1\|	8.2e-32	82.14	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700195620\|gb\|KGN50797.1\|	5.4e-07	81.82	hypothetical protein Csa_5G264300 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C012698	MELO3C012698	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C012698T1	MELO3C012698T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012698T1.cds1	MELO3C012698T1.cds1	CDS
MELO3C012698T1.cds2	MELO3C012698T1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 40..67 scor