MELO3C011356T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C011356T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP-dependent Clp protease ATP-binding subunit ClpX
Locationchr3 : 24457056 .. 24458326 (+)
Sequence length1271
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTAACAATTCCTCTGTAAATGGGTTGCTGATAAACCCCATCATCCATTCTTTGGATCAATCAAACATATACATTTTTCTAACTCTTCTATTGATTCTGGGTTGTGTTATTTTCTGTTTTTCAAAAAGAAAAACCCTCTTTTTTTGTTCAAATTCATACGAATTTCTTTACGATAGTCTATCTTTTTGTTTCGATTGGGACTCTGTTTTCCTTTTCCTTTTTAACTGCAGCGTTTTGATTTTTGTTGATTTTTTCAGGTTCAGATATTTGTAAAGTGCAGCAATGGAGGTAGTTTTGATTCCATTTTCTGCTGATCAATCTCGCAGTTTTAATCCTCAAAATTTATCTCCGGCCACCGTTCACGCCGGTCTTCTTAACTTCCCTCTGCGGGGAATCCCATATAACGGCCGCCGCCACCACCAGCAACCGCCACTTCTCCCTTTGCCCCGCCGTCCACTTCCCCCTTCGGAAACCGGAGCCACGTCCTTCTTTCGCCAAAAGTGTGTGAAATTCAGAGACCAATCTCTTAACCCAAAGAAATCAAAGCCAATAAAACGAAGTAGGGGTCCACCAGCGGCGAAATCGACGGTGGAATTAGTGATCATTGATTCCACCAATAGACTGGGGCCGGAGCCGTGCCACGTTCCTAAAGATTTATGGAGAGTTCTAGGATTACGGCCGTCGGCGCCGATGTGCAAAAAGTACCCGAAGTTGGGAGACGGCGGCGGAAATTGAGTTTTCGGGGTCGGCATGCAGCCAATCGCCGCCGCCGAGTAGCGTTCCGCTTCCGAAATTCTCTCTGAGACGGAAGGTGGTTGGTTGTAACGTGGAGGGCGCCGGAGTAGACGCCGGCGCCACTGACAATCTCAGGCGACTATTGCGCCTCCGATGAAGAAGGTTTATGGTTTAATATTGAAAGGGTATTTGTTTGTGTGTTTCTCGCGATCACTACCTTGGTTTTTTGAAATGGGAGGTGAACAAACCAAAACCTGAAAGTCTCTACTTGTAAGTTGTAACCTTTTAGATTCATTAGGGTTTGTAATTCAACAAAGAATATGGTTAAATACATTAGGGTTTGTATGTTAAAAATGGTCACGATGGTCTCTCAACTTTGACTTTTAAAATGCTATTAACTTGGTCATATTTTAGCGCACGCAACAATTTAGAGTAAAGTATCGAGAAAGCATGGGTTGAGAGGTTTGACTAGTAAATATTGGAGCCAAGTGTAAAAACTGAGATCGGAATATAAAATTGATGTTTTTTTAAGTGG

mRNA sequence

AGCTAACAATTCCTCTGTAAATGGGTTGCTGATAAACCCCATCATCCATTCTTTGGATCAATCAAACATATACATTTTTCTAACTCTTCTATTGATTCTGGGTTGTGTTATTTTCTGTTTTTCAAAAAGAAAAACCCTCTTTTTTTGTTCAAATTCATACGAATTTCTTTACGATAGTCTATCTTTTTGTTTCGATTGGGACTCTGTTTTCCTTTTCCTTTTTAACTGCAGCGTTTTGATTTTTGTTGATTTTTTCAGGTTCAGATATTTGTAAAGTGCAGCAATGGAGGTAGTTTTGATTCCATTTTCTGCTGATCAATCTCGCAGTTTTAATCCTCAAAATTTATCTCCGGCCACCGTTCACGCCGGTCTTCTTAACTTCCCTCTGCGGGGAATCCCATATAACGGCCGCCGCCACCACCAGCAACCGCCACTTCTCCCTTTGCCCCGCCGTCCACTTCCCCCTTCGGAAACCGGAGCCACGTCCTTCTTTCGCCAAAAGTGTGTGAAATTCAGAGACCAATCTCTTAACCCAAAGAAATCAAAGCCAATAAAACGAAGTAGGGGTCCACCAGCGGCGAAATCGACGGTGGAATTAGTGATCATTGATTCCACCAATAGACTGGGGCCGGAGCCGTGCCACGTTCCTAAAGATTTATGGAGAGTTCTAGGATTACGGCCGTCGGCGCCGATGTGCAAAAAGTACCCGAAGTTGGGAGACGGCGGCGGAAATTGAGTTTTCGGGGTCGGCATGCAGCCAATCGCCGCCGCCGAGTAGCGTTCCGCTTCCGAAATTCTCTCTGAGACGGAAGGTGGTTGGTTGTAACGTGGAGGGCGCCGGAGTAGACGCCGGCGCCACTGACAATCTCAGGCGACTATTGCGCCTCCGATGAAGAAGGTTTATGGTTTAATATTGAAAGGGTATTTGTTTGTGTGTTTCTCGCGATCACTACCTTGGTTTTTTGAAATGGGAGGTGAACAAACCAAAACCTGAAAGTCTCTACTTGTAAGTTGTAACCTTTTAGATTCATTAGGGTTTGTAATTCAACAAAGAATATGGTTAAATACATTAGGGTTTGTATGTTAAAAATGGTCACGATGGTCTCTCAACTTTGACTTTTAAAATGCTATTAACTTGGTCATATTTTAGCGCACGCAACAATTTAGAGTAAAGTATCGAGAAAGCATGGGTTGAGAGGTTTGACTAGTAAATATTGGAGCCAAGTGTAAAAACTGAGATCGGAATATAAAATTGATGTTTTTTTAAGTGG

Coding sequence (CDS)

ATGGAGGTAGTTTTGATTCCATTTTCTGCTGATCAATCTCGCAGTTTTAATCCTCAAAATTTATCTCCGGCCACCGTTCACGCCGGTCTTCTTAACTTCCCTCTGCGGGGAATCCCATATAACGGCCGCCGCCACCACCAGCAACCGCCACTTCTCCCTTTGCCCCGCCGTCCACTTCCCCCTTCGGAAACCGGAGCCACGTCCTTCTTTCGCCAAAAGTGTGTGAAATTCAGAGACCAATCTCTTAACCCAAAGAAATCAAAGCCAATAAAACGAAGTAGGGGTCCACCAGCGGCGAAATCGACGGTGGAATTAGTGATCATTGATTCCACCAATAGACTGGGGCCGGAGCCGTGCCACGTTCCTAAAGATTTATGGAGAGTTCTAGGATTACGGCCGTCGGCGCCGATGTGCAAAAAGTACCCGAAGTTGGGAGACGGCGGCGGAAATTGA

Protein sequence

MEVVLIPFSADQSRSFNPQNLSPATVHAGLLNFPLRGIPYNGRRHHQQPPLLPLPRRPLPPSETGATSFFRQKCVKFRDQSLNPKKSKPIKRSRGPPAAKSTVELVIIDSTNRLGPEPCHVPKDLWRVLGLRPSAPMCKKYPKLGDGGGN*
Homology
[Close]
BLAST of MELO3C011356T1 vs. TrEMBL
Match: A0A0A0LN70_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G345930 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.1e-58
Identity = 112/139 (80.58%), Postives = 118/139 (84.89%), Query Frame = 1 

Query: 1   MEVVLIPFSADQSRSFNPQNLSPATVHAGLLNFPLRGIPYNGRRHHQQPPLLPLPRRPLP 60
           MEVV IPFSADQSR FNPQN SPA VH G LNFPL GI YN  R HQQPPLLPLPRRPLP
Sbjct: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60

Query: 61  PSETGATSFFRQKCVKFRDQSLNPKKSKPIKRSRGPPAAKSTVELVIIDSTNRLGPEPCH 120
           PSE GAT   R KC++FRDQSL PKKSKPIKRSRGPPAAKSTVELVI+DSTNRLGPEP H
Sbjct: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120

Query: 121 VPKDLWRVLGLRPSAPMCK 140
           VPKDL  +LGLRPS P+C+
Sbjct: 121 VPKDLLTLLGLRPSVPLCE 139

[Close]
BLAST of MELO3C011356T1 vs. TrEMBL
Match: F6H1M4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14640 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-12
Identity = 64/158 (40.51%), Postives = 76/158 (48.10%), Query Frame = 1 

Query: 1   MEVVLIPFSADQSRS-----FNP------------QNLSPA-TVHAGLL---------NF 60
           ME VL+P S  QS S      NP            +NLSP+  +H GLL         +F
Sbjct: 1   MEAVLVPSSPKQSISPYRQIRNPKRNNRRFISKPSENLSPSRNIHGGLLLAPPPSLSSSF 60

Query: 61  PLRGIPYNGRRHHQQPPLLPLP----RRPLPPSETGATSFFRQKCVKFRDQSLNPKKSKP 120
               + ++   HHQQPPLLPLP       LPP           K  K RDQSL PKKSKP
Sbjct: 61  HSSALLFDHHPHHQQPPLLPLPVPKTYASLPPRSPPLN-----KKTKIRDQSLTPKKSKP 120

Query: 121 IKRSRGPPAAKSTV---ELVIIDSTNRLGPEPCHVPKD 125
             RS     +KST      V+  STNRLGP+P  +PKD
Sbjct: 121 SSRSPKKEDSKSTAISDGSVMAASTNRLGPDPKDLPKD 153

[Close]
BLAST of MELO3C011356T1 vs. TrEMBL
Match: M5Y1B3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024785mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 54/146 (36.99%), Postives = 69/146 (47.26%), Query Frame = 1 

Query: 19  QNLSPAT--VHAGLLNFPLRGIPYN-------------------GRRHHQQPPLLPLP-- 78
           +NL+P    +H GLL  P   + ++                    R+  Q PPLLPLP  
Sbjct: 7   ENLAPINYNIHGGLLQAPSPSLSFSYNPPASLYNQYRYQQLQHVQRQQQQHPPLLPLPVP 66

Query: 79  RRP------LP--PSETGATSF--FRQKCVKFRDQSLNPKK--SKPIKRSRGPPAAKSTV 130
            RP      LP  PS T   S     +K    R QSL PKK  SKP K+      AK   
Sbjct: 67  NRPPHHHQSLPSLPSRTRGLSRPPTTRKANNARSQSLTPKKPKSKPSKKEE----AKQIS 126

[Close]
BLAST of MELO3C011356T1 vs. TrEMBL
Match: A0A067KKX6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08192 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.1e-06
Identity = 62/178 (34.83%), Postives = 79/178 (44.38%), Query Frame = 1 

Query: 1   MEVVLIPFSADQS--------------RSF---NPQNLSPAT---VHAGLLNF------- 60
           ME + +P SADQS              RSF   + +NL+P     +H   L F       
Sbjct: 1   MEAIFVPSSADQSISHKQMKNQSKRNTRSFVSRSTENLAPTNNNNIHGSGLLFAPPPSLS 60

Query: 61  ----PLRGIPYNGRRHHQ-QPPLLPLP-RRPLP--PSETGATSF--FRQKCVKFRDQSLN 120
               P   I Y  +   Q QPPLLPLP  RP    PS T   S     +K  + RDQSL 
Sbjct: 61  FSCPPSFSILYPQQIQRQTQPPLLPLPISRPYNSLPSRTRDISCPPISRKTNRTRDQSLT 120

Query: 121 PKKSKPIKRSRGPPAAKSTV-------ELVIIDSTNRLGPEPCHVPKDLWRVLGLRPS 135
           PKKSK     R  P+  S V       +  +  ST  LGP+P  +PKD+ +V+   PS
Sbjct: 121 PKKSKQPITKREEPSQDSKVTRDKLSAKSFVTVSTAPLGPDPKDLPKDISKVISSSPS 178

[Close]
BLAST of MELO3C011356T1 vs. NCBI nr
Match: gi|700207133|gb|KGN62252.1| (hypothetical protein Csa_2G345930 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 4.4e-58
Identity = 112/139 (80.58%), Postives = 118/139 (84.89%), Query Frame = 1 

Query: 1   MEVVLIPFSADQSRSFNPQNLSPATVHAGLLNFPLRGIPYNGRRHHQQPPLLPLPRRPLP 60
           MEVV IPFSADQSR FNPQN SPA VH G LNFPL GI YN  R HQQPPLLPLPRRPLP
Sbjct: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60

Query: 61  PSETGATSFFRQKCVKFRDQSLNPKKSKPIKRSRGPPAAKSTVELVIIDSTNRLGPEPCH 120
           PSE GAT   R KC++FRDQSL PKKSKPIKRSRGPPAAKSTVELVI+DSTNRLGPEP H
Sbjct: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120

Query: 121 VPKDLWRVLGLRPSAPMCK 140
           VPKDL  +LGLRPS P+C+
Sbjct: 121 VPKDLLTLLGLRPSVPLCE 139

[Close]
BLAST of MELO3C011356T1 vs. NCBI nr
Match: gi|359492270|ref|XP_003634392.1| (PREDICTED: uncharacterized protein LOC100249003 [Vitis vinifera])

HSP 1 Score: 79.3 bits (194), Expect = 6.2e-12
Identity = 64/158 (40.51%), Postives = 76/158 (48.10%), Query Frame = 1 

Query: 1   MEVVLIPFSADQSRS-----FNP------------QNLSPA-TVHAGLL---------NF 60
           ME VL+P S  QS S      NP            +NLSP+  +H GLL         +F
Sbjct: 1   MEAVLVPSSPKQSISPYRQIRNPKRNNRRFISKPSENLSPSRNIHGGLLLAPPPSLSSSF 60

Query: 61  PLRGIPYNGRRHHQQPPLLPLP----RRPLPPSETGATSFFRQKCVKFRDQSLNPKKSKP 120
               + ++   HHQQPPLLPLP       LPP           K  K RDQSL PKKSKP
Sbjct: 61  HSSALLFDHHPHHQQPPLLPLPVPKTYASLPPRSPPLN-----KKTKIRDQSLTPKKSKP 120

Query: 121 IKRSRGPPAAKSTV---ELVIIDSTNRLGPEPCHVPKD 125
             RS     +KST      V+  STNRLGP+P  +PKD
Sbjct: 121 SSRSPKKEDSKSTAISDGSVMAASTNRLGPDPKDLPKD 153

[Close]
BLAST of MELO3C011356T1 vs. NCBI nr
Match: gi|694316652|ref|XP_009334864.1| (PREDICTED: uncharacterized protein LOC103927644 [Pyrus x bretschneideri])

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07
Identity = 61/161 (37.89%), Postives = 76/161 (47.20%), Query Frame = 1 

Query: 19  QNLSPAT--VHAGLLNFP-----------LRGIPYNGRRHHQQPPLLPLP--------RR 78
           +NL+P     H GLL  P            + +    R+ HQ PPLLPLP         R
Sbjct: 24  ENLAPINNNFHGGLLQAPPPSLSLFNHYRYQHLQQAQRQQHQNPPLLPLPVPNRPPHHHR 83

Query: 79  PLP--PSETGATS----FFRQKCVKFRDQSLNPKK--SKPIKRSRGPPAA-KSTVELVII 138
            LP  PS T   S      +   +  R QSL PKK  SKP K+        K+  E +II
Sbjct: 84  SLPSLPSRTRGASRPPAARKTNNMITRSQSLTPKKPKSKPSKKEEANKQDFKAISECLII 143

Query: 139 DSTNRLGPEPCHVPKDLWRVLGLRPSAPMCKKYPKLGDGGG 150
            STNRLGP+P  +PKD+ RVL    S+ + K    LG GGG
Sbjct: 144 ASTNRLGPDPNDLPKDVTRVL----SSSIGK---SLGGGGG 177

[Close]
BLAST of MELO3C011356T1 vs. NCBI nr
Match: gi|1009135162|ref|XP_015884838.1| (PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-07
Identity = 55/145 (37.93%), Postives = 72/145 (49.66%), Query Frame = 1 

Query: 13  SRSFNP---QNLSPATVHAGLLNFPLRGIPYN--GRRHH--QQPPLLPLP-RRP----LP 72
           SR+F+    +NL+P   H GLL+ P   + Y+     HH  +QPPLLPLP  RP     P
Sbjct: 23  SRAFSSIPSENLAPINSHGGLLSAPPPSLSYSYPPTHHHYYRQPPLLPLPVSRPHHGHSP 82

Query: 73  PSETGATSF--FRQKCVKFRDQSL--NPKKSKP------------IKRSRGPPAAKSTVE 130
           PS +   S      K  K RD  +   PKKSK              K+     + KS   
Sbjct: 83  PSRSRGLSCPPTTGKTNKARDNPIATTPKKSKSKPPCVSKIDQEETKQQLHTKSMKSGTG 142

[Close]
BLAST of MELO3C011356T1 vs. NCBI nr
Match: gi|596294279|ref|XP_007226809.1| (hypothetical protein PRUPE_ppa024785mg, partial [Prunus persica])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 54/146 (36.99%), Postives = 69/146 (47.26%), Query Frame = 1 

Query: 19  QNLSPAT--VHAGLLNFPLRGIPYN-------------------GRRHHQQPPLLPLP-- 78
           +NL+P    +H GLL  P   + ++                    R+  Q PPLLPLP  
Sbjct: 7   ENLAPINYNIHGGLLQAPSPSLSFSYNPPASLYNQYRYQQLQHVQRQQQQHPPLLPLPVP 66

Query: 79  RRP------LP--PSETGATSF--FRQKCVKFRDQSLNPKK--SKPIKRSRGPPAAKSTV 130
            RP      LP  PS T   S     +K    R QSL PKK  SKP K+      AK   
Sbjct: 67  NRPPHHHQSLPSLPSRTRGLSRPPTTRKANNARSQSLTPKKPKSKPSKKEE----AKQIS 126

The following BLAST results are available for this feature:
BLAST of MELO3C011356T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN70_CUCSA3.1e-5880.58Uncharacterized protein OS=Cucumis sativus GN=Csa_2G345930 PE=4 SV=1[more]
F6H1M4_VITVI4.3e-1240.51Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14640 PE=4 SV=... [more]
M5Y1B3_PRUPE1.2e-0636.99Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024785mg PE=4 S... [more]
A0A067KKX6_JATCU6.1e-0634.83Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08192 PE=4 SV=1[more]
BLAST of MELO3C011356T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207133|gb|KGN62252.1|4.4e-5880.58hypothetical protein Csa_2G345930 [Cucumis sativus][more]
gi|359492270|ref|XP_003634392.1|6.2e-1240.51PREDICTED: uncharacterized protein LOC100249003 [Vitis vinifera][more]
gi|694316652|ref|XP_009334864.1|2.1e-0737.89PREDICTED: uncharacterized protein LOC103927644 [Pyrus x bretschneideri][more]
gi|1009135162|ref|XP_015884838.1|4.6e-0737.93PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Zizi... [more]
gi|596294279|ref|XP_007226809.1|1.8e-0636.99hypothetical protein PRUPE_ppa024785mg, partial [Prunus persica][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C011356MELO3C011356gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C011356T1MELO3C011356T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C011356T1.cds1MELO3C011356T1.cds1CDS