MELO3C011342.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C011342.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPseudouridine synthase
Locationchr03 : 26810407 .. 26812601 (+)
Sequence length1203
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCCGTTTGCTCCGCTCGAACAATTCAAGCTTCACCTTCTTCTATTCACTTCTTTTTCCCTCGAAATCGTAGGAGAATCGATTCAAATGTTCTTCGATTTTCCGCCAATTTCTCCAGTAGATGCTCCGATTACGATGAATATAGTGAAGCTCAATCCGAACGGATAGCCAATTACGCCGGAACCAGACTGGAAGAGACCGTGGACATCAATCCCGGTAAAGTTCGTCTCGATTCTTGGATATCTTCCCGCATTAACGGTATTAGTAGGGCTCGAGTTCAGTCCAGTATCAGAGCGGGATTAGTTTCAGTTAATGGCCGAGTTATCGATAAGGTAGCGTCATTTTTCCATAGAGAAGCTACATTTGCTTAACATTTTTTTCCTTTCTATTTAGCTTCTTTCAGCTATTTTAGTGTGATTATCAAGTGGTCTGTAATCTGGATGGCGAATTATGTTCAGCCGATATTTTCTGTTTTGTTCTATATTTGAGTTCTTAACTTGTGTGTTCATTTGCAACTTCTATATATTTTTTTAATACTCAAGCAGGTTTCTCACAATGTAAAAGCTGGGGATGTGATCAATTGTACCATATCCGAGTTGCAACCATTGAGAGCTGAACCTGAAGATATTGATTTGGATATAGTTTATGAAGATGAACATGTTTTAGTCGTAAACAAACCTGCTCACATGGTAATGATTCAAAAAAGTTTAATATTGTTATTATCAATACTATTGGAAGTTCTTTGTGGATGCAAGATACCGATACTTGTGGATAAAATTAAACGCTCTCCCCTCCCCCGCCTGAAGTTTTTAGTAAGATTGAAATTTGCACGTATCTGTGTTTAGCGGTTTTCTTCATGATTCAGGTTGTTCATCCAGCACCTGGAAATGCGACGGGAACACTAGTAAATGCCATTCTTAACCACTGCAGTCTCCCGATGGTTTCAACATCAACTGGGGAACATCAGTCGGATTCGGATGTTTCAGATGATGAGTTCAGTTCAATTGAAGTTTTTTCTAGAGTTTCTGAGGCGCCTATTCGTCCCGGTATTGTGCATAGGTTAGATAAAGGAACTAGTGGGTTGCTTGTTGTTGCCAAGGTGATTTGCTCTCCTTTTTAAGCTTCTTTGTTTCTGAAGATTAAAGCAGACAATTCAAATTTGGCGCTTCAAAAGTTTGCTACTCAAACACTTGTAATATCATGTCTAACTTCCAAGTTTTTTGCATTGGAACTACAGGATGAACATTCCCATGCTCACTTATCTGCTCAATTCAAGCAACATTCTATTGAGAGAGTTTATATTAGTCTCACATGTGGAGTTCCACCCTCAACTGCTGGGCGTATTGAGATACCAATTTGCCGTGATCCAAACAATCGTATCCGCATGACTGCAACACATGGAACAAAAAATAATCCACATGCAAAGCACGCTGCTAGTAGGTAATTAGTTTTTCTGCATCTTTTATTTTATTTTATGTACATAATTATTTTACAGTGATAGAAAAAATTTAAATATCATTAATTTTGGGCGTTCCTAATGCAAAGTTGAAACACTGAACGTTTCACAGATACAATGTTATGGAAATTTTAGCCCAAGGAGGTTCTTCATTGGTTGAGTGGAGATTAGAAACAGGCCGCACGCATCAGGTACGTAGTGTAAATGTCTTTCTCCTTAGGCTGCTTCAAATGACAATATATATATATACATATTACAATCCATCAACAATGCCAGTTTAGAACATAAATTATATTCCCTAAACACCACGTATATGTGCAAAGACATACATTTCTTTTGTTTGTAAAATGTTTCTCTACAATACTGCTACTGTTTTCCAGTCTTACGTATATATGCATATGTAACTCTTGAACATACAAGCAGCCACATTTACCATTCCACATTCGCTGCAATTTCAGTTCTTTTCTTTTGAAAATTGAAATGCAGTTTTACTTTACTCGGTCTTAGGATTGAATATTTGTGAAGTAGATACGTGCACATGCGAAGTATATGGGAATACCGTTACTTGGAGACGAGGTCTATGGAGGTACCAAGAGCATGGCCATGTCGCTGCTTCGAACTAGAGCATCATCTAATTGTCACGGCCAACTCATGCAGCTTGTTTCTTCATTAGAGAGGCCCTGTCTTCATGCTCTGACTCTTGGGTTAGAAAATAAATCTTTAAGAGCTCATTGA

mRNA sequence

ATGATTTCCGTTTGCTCCGCTCGAACAATTCAAGCTTCACCTTCTTCTATTCACTTCTTTTTCCCTCGAAATCGTAGGAGAATCGATTCAAATGTTCTTCGATTTTCCGCCAATTTCTCCAGTAGATGCTCCGATTACGATGAATATAGTGAAGCTCAATCCGAACGGATAGCCAATTACGCCGGAACCAGACTGGAAGAGACCGTGGACATCAATCCCGGTAAAGTTCGTCTCGATTCTTGGATATCTTCCCGCATTAACGGTATTAGTAGGGCTCGAGTTCAGTCCAGTATCAGAGCGGGATTAGTTTCAGTTAATGGCCGAGTTATCGATAAGGTTTCTCACAATGTAAAAGCTGGGGATGTGATCAATTGTACCATATCCGAGTTGCAACCATTGAGAGCTGAACCTGAAGATATTGATTTGGATATAGTTTATGAAGATGAACATGTTTTAGTCGTAAACAAACCTGCTCACATGGTTGTTCATCCAGCACCTGGAAATGCGACGGGAACACTAGTAAATGCCATTCTTAACCACTGCAGTCTCCCGATGGTTTCAACATCAACTGGGGAACATCAGTCGGATTCGGATGTTTCAGATGATGAGTTCAGTTCAATTGAAGTTTTTTCTAGAGTTTCTGAGGCGCCTATTCGTCCCGGTATTGTGCATAGGTTAGATAAAGGAACTAGTGGGTTGCTTGTTGTTGCCAAGGATGAACATTCCCATGCTCACTTATCTGCTCAATTCAAGCAACATTCTATTGAGAGAGTTTATATTAGTCTCACATGTGGAGTTCCACCCTCAACTGCTGGGCGTATTGAGATACCAATTTGCCGTGATCCAAACAATCGTATCCGCATGACTGCAACACATGGAACAAAAAATAATCCACATGCAAAGCACGCTGCTAGTAGATACAATGTTATGGAAATTTTAGCCCAAGGAGGTTCTTCATTGGTTGAGTGGAGATTAGAAACAGGCCGCACGCATCAGATACGTGCACATGCGAAGTATATGGGAATACCGTTACTTGGAGACGAGGTCTATGGAGGTACCAAGAGCATGGCCATGTCGCTGCTTCGAACTAGAGCATCATCTAATTGTCACGGCCAACTCATGCAGCTTGTTTCTTCATTAGAGAGGCCCTGTCTTCATGCTCTGACTCTTGGGTTAGAAAATAAATCTTTAAGAGCTCATTGA

Coding sequence (CDS)

ATGATTTCCGTTTGCTCCGCTCGAACAATTCAAGCTTCACCTTCTTCTATTCACTTCTTTTTCCCTCGAAATCGTAGGAGAATCGATTCAAATGTTCTTCGATTTTCCGCCAATTTCTCCAGTAGATGCTCCGATTACGATGAATATAGTGAAGCTCAATCCGAACGGATAGCCAATTACGCCGGAACCAGACTGGAAGAGACCGTGGACATCAATCCCGGTAAAGTTCGTCTCGATTCTTGGATATCTTCCCGCATTAACGGTATTAGTAGGGCTCGAGTTCAGTCCAGTATCAGAGCGGGATTAGTTTCAGTTAATGGCCGAGTTATCGATAAGGTTTCTCACAATGTAAAAGCTGGGGATGTGATCAATTGTACCATATCCGAGTTGCAACCATTGAGAGCTGAACCTGAAGATATTGATTTGGATATAGTTTATGAAGATGAACATGTTTTAGTCGTAAACAAACCTGCTCACATGGTTGTTCATCCAGCACCTGGAAATGCGACGGGAACACTAGTAAATGCCATTCTTAACCACTGCAGTCTCCCGATGGTTTCAACATCAACTGGGGAACATCAGTCGGATTCGGATGTTTCAGATGATGAGTTCAGTTCAATTGAAGTTTTTTCTAGAGTTTCTGAGGCGCCTATTCGTCCCGGTATTGTGCATAGGTTAGATAAAGGAACTAGTGGGTTGCTTGTTGTTGCCAAGGATGAACATTCCCATGCTCACTTATCTGCTCAATTCAAGCAACATTCTATTGAGAGAGTTTATATTAGTCTCACATGTGGAGTTCCACCCTCAACTGCTGGGCGTATTGAGATACCAATTTGCCGTGATCCAAACAATCGTATCCGCATGACTGCAACACATGGAACAAAAAATAATCCACATGCAAAGCACGCTGCTAGTAGATACAATGTTATGGAAATTTTAGCCCAAGGAGGTTCTTCATTGGTTGAGTGGAGATTAGAAACAGGCCGCACGCATCAGATACGTGCACATGCGAAGTATATGGGAATACCGTTACTTGGAGACGAGGTCTATGGAGGTACCAAGAGCATGGCCATGTCGCTGCTTCGAACTAGAGCATCATCTAATTGTCACGGCCAACTCATGCAGCTTGTTTCTTCATTAGAGAGGCCCTGTCTTCATGCTCTGACTCTTGGGTTAGAAAATAAATCTTTAAGAGCTCATTGA

Protein sequence

MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANYAGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHAKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGLENKSLRAH
Homology
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BLAST of MELO3C011342.2.1 vs. NCBI nr
Match: XP_008445318.1 (PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Cucumis melo] >XP_008445319.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 775.0 bits (2000), Expect = 1.2e-220
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0 

Query: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60
           MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY
Sbjct: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60

Query: 61  AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120
           AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG
Sbjct: 61  AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120

Query: 121 DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180
           DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 181 CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240
           CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 181 CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240

Query: 241 HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA 300
           HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA
Sbjct: 241 HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA 300

Query: 301 KHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL 360
           KHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL
Sbjct: 301 KHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL 360

Query: 361 LRTRASSNCHGQLMQLVSSLERPCLHALTLG 392
           LRTRASSNCHGQLMQLVSSLERPCLHALTLG
Sbjct: 361 LRTRASSNCHGQLMQLVSSLERPCLHALTLG 391

[Close]
BLAST of MELO3C011342.2.1 vs. NCBI nr
Match: XP_008445320.1 (PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 775.0 bits (2000), Expect = 1.2e-220
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0 

Query: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60
           MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY
Sbjct: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60

Query: 61  AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120
           AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG
Sbjct: 61  AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120

Query: 121 DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180
           DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 181 CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240
           CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 181 CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240

Query: 241 HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA 300
           HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA
Sbjct: 241 HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA 300

Query: 301 KHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL 360
           KHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL
Sbjct: 301 KHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL 360

Query: 361 LRTRASSNCHGQLMQLVSSLERPCLHALTLG 392
           LRTRASSNCHGQLMQLVSSLERPCLHALTLG
Sbjct: 361 LRTRASSNCHGQLMQLVSSLERPCLHALTLG 391

[Close]
BLAST of MELO3C011342.2.1 vs. NCBI nr
Match: XP_011649465.1 (PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Cucumis sativus] >KGN62268.1 hypothetical protein Csa_2G346580 [Cucumis sativus])

HSP 1 Score: 739.2 bits (1907), Expect = 7.5e-210
Identity = 375/392 (95.66%), Postives = 383/392 (97.70%), Query Frame = 0 

Query: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRC-SDYDEYSEAQSERIAN 60
           MISVCSARTIQASPS IHFFFP NRRRI SNVLR S+NFS+RC SDYDEYSEAQSERIAN
Sbjct: 1   MISVCSARTIQASPSPIHFFFPPNRRRIGSNVLRISSNFSTRCSSDYDEYSEAQSERIAN 60

Query: 61  YAGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKA 120
           YAGTRLEETVD+NPGKVRLDSWIS RINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKA
Sbjct: 61  YAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKA 120

Query: 121 GDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILN 180
           GDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILN
Sbjct: 121 GDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILN 180

Query: 181 HCSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKD 240
           HCSLPMV+TSTGE++SDSDVSDDEFSSI VFSRVSEAPIRPGIVHRLDKGTSGLLVVAKD
Sbjct: 181 HCSLPMVATSTGENESDSDVSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKD 240

Query: 241 EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPH 300
           EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIE+PICRDPNNRIRMTA  GTKNNPH
Sbjct: 241 EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPH 300

Query: 301 AKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMS 360
           AK+AASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMS
Sbjct: 301 AKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMS 360

Query: 361 LLRTRASSNCHGQLMQLVSSLERPCLHALTLG 392
           LLRTRASSNCHGQLMQLVSSLERPCLHALTLG
Sbjct: 361 LLRTRASSNCHGQLMQLVSSLERPCLHALTLG 392

[Close]
BLAST of MELO3C011342.2.1 vs. NCBI nr
Match: XP_011649466.1 (PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 739.2 bits (1907), Expect = 7.5e-210
Identity = 375/392 (95.66%), Postives = 383/392 (97.70%), Query Frame = 0 

Query: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRC-SDYDEYSEAQSERIAN 60
           MISVCSARTIQASPS IHFFFP NRRRI SNVLR S+NFS+RC SDYDEYSEAQSERIAN
Sbjct: 1   MISVCSARTIQASPSPIHFFFPPNRRRIGSNVLRISSNFSTRCSSDYDEYSEAQSERIAN 60

Query: 61  YAGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKA 120
           YAGTRLEETVD+NPGKVRLDSWIS RINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKA
Sbjct: 61  YAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKA 120

Query: 121 GDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILN 180
           GDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILN
Sbjct: 121 GDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILN 180

Query: 181 HCSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKD 240
           HCSLPMV+TSTGE++SDSDVSDDEFSSI VFSRVSEAPIRPGIVHRLDKGTSGLLVVAKD
Sbjct: 181 HCSLPMVATSTGENESDSDVSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKD 240

Query: 241 EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPH 300
           EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIE+PICRDPNNRIRMTA  GTKNNPH
Sbjct: 241 EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPH 300

Query: 301 AKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMS 360
           AK+AASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMS
Sbjct: 301 AKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMS 360

Query: 361 LLRTRASSNCHGQLMQLVSSLERPCLHALTLG 392
           LLRTRASSNCHGQLMQLVSSLERPCLHALTLG
Sbjct: 361 LLRTRASSNCHGQLMQLVSSLERPCLHALTLG 392

[Close]
BLAST of MELO3C011342.2.1 vs. NCBI nr
Match: XP_022142903.1 (RNA pseudouridine synthase 2, chloroplastic isoform X1 [Momordica charantia] >XP_022142904.1 RNA pseudouridine synthase 2, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 661.8 bits (1706), Expect = 1.5e-186
Identity = 338/392 (86.22%), Postives = 357/392 (91.07%), Query Frame = 0 

Query: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60
           MISVCS R IQA+P SI  FFPRNR RI SNV R + N S+RCSDYDE  EA SERI NY
Sbjct: 1   MISVCSVRAIQAAP-SIQLFFPRNRGRITSNVHRIATNHSTRCSDYDECGEAHSERITNY 60

Query: 61  AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120
           AG RLEE VD+N GK+RLDSWIS RINGISRARVQSSIRAGLV+VNGRVIDKVSHN+KAG
Sbjct: 61  AGMRLEEIVDVNSGKIRLDSWISCRINGISRARVQSSIRAGLVTVNGRVIDKVSHNIKAG 120

Query: 121 DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180
           D+INCTISELQPLRA+PEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DMINCTISELQPLRAKPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 181 CSLPMVSTSTGEHQSDSDVSDDEFSSIEVF-SRVSEAPIRPGIVHRLDKGTSGLLVVAKD 240
           CSLPMV+TS GE  SD D+SDDEFSS E+  SR SEAPIRPGIVHRLDKGTSGLLVVAKD
Sbjct: 181 CSLPMVATSNGE-LSDMDISDDEFSSNEILSSRASEAPIRPGIVHRLDKGTSGLLVVAKD 240

Query: 241 EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPH 300
           EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIE+PICRDPNNRIRM+A   T  NPH
Sbjct: 241 EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEVPICRDPNNRIRMSAVLRTNKNPH 300

Query: 301 AKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMS 360
           AK+AASRY V+EILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMA+S
Sbjct: 301 AKYAASRYKVIEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALS 360

Query: 361 LLRTRASSNCHGQLMQLVSSLERPCLHALTLG 392
           LLRTR SS+CH QLMQLVS+LERPCLHALTLG
Sbjct: 361 LLRTRTSSSCHSQLMQLVSALERPCLHALTLG 390

[Close]
BLAST of MELO3C011342.2.1 vs. TAIR10
Match: AT1G76050.2 (Pseudouridine synthase family protein)

HSP 1 Score: 449.1 bits (1154), Expect = 2.8e-126
Identity = 249/398 (62.56%), Postives = 293/398 (73.62%), Query Frame = 0 

Query: 3   SVCSARTIQ--ASPS---SIHF-FFPRNRRRIDSNVLRFSANFSS--RCSDYDEYSEAQS 62
           S+ +A++++  +SPS   SI F FFP+      SN +R S+   +   CS     +E   
Sbjct: 11  SLTTAKSLRYPSSPSSSLSIFFSFFPK-----VSNFVRASSGIPNLVACSP----TEIII 70

Query: 63  ERIANYAGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVS 122
            R+ N AG R+EE VD   GK+RLDSWISSRING+SRARVQSSIR GLV+VNGRV+DKVS
Sbjct: 71  PRV-NNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVS 130

Query: 123 HNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLV 182
           HNVK+GD +NCTISELQPL+AE EDI LDIVYED+HVLVVNKPAHMVVHPAPGN TGTLV
Sbjct: 131 HNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLV 190

Query: 183 NAILNHCSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVS-EAPIRPGIVHRLDKGTSGL 242
           N IL+HCSLP V  S                           A +RPGIVHRLDKGT+GL
Sbjct: 191 NGILHHCSLPCVDYSNXXXXXXXXXXXXXXXXXXXXXXXXYAASVRPGIVHRLDKGTTGL 250

Query: 243 LVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHG 302
           LVVAKDEHSHAHL+ QFK H+IERVY+SLT GVP    GRIEIPI RD +NRIRM A  G
Sbjct: 251 LVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPG 310

Query: 303 TKNNPHAKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGT 362
                 A+HAASRY V+E  A GGS+LVEWRLETGRTHQIRAHAKYMG+PLLGDEVYGGT
Sbjct: 311 GVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGT 370

Query: 363 KSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLG 392
           KSMA+SLL+ R S +   ++++L+S ++RPCLHA+ LG
Sbjct: 371 KSMALSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLG 398

[Close]
BLAST of MELO3C011342.2.1 vs. TAIR10
Match: AT3G19440.1 (Pseudouridine synthase family protein)

HSP 1 Score: 72.0 bits (175), Expect = 9.3e-13
Identity = 63/226 (27.88%), Postives = 103/226 (45.58%), Query Frame = 0 

Query: 144 IVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVSTSTGEHQSDSDVSDDE 203
           ++Y+D  ++V+NKP  + V    G  T                             S DE
Sbjct: 185 VLYKDPAIIVLNKPHGLAVQGGSGIKT-----------------------------SIDE 244

Query: 204 FSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQ----------- 263
            ++  +    SE+   P +VHRLD+  SGLLV+A+ + +   L + F++           
Sbjct: 245 LAASCLKFDKSES---PRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVK 304

Query: 264 ---HSIERVYISLTCGVPPSTAGRIEIPICR---DPNNRIRMTATHGTKNNPHAKHAASR 323
               S++R Y++L  G PP   G+I  P+ +   D     R+T  +        +HA + 
Sbjct: 305 KNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERIT-VNDNGELVSTQHAITE 364

Query: 324 YNVMEILAQGGSSLVEWRLETGRTHQIRAH-AKYMGIPLLGDEVYG 352
           Y V+E  +  G + +E R  TGR HQ+R H A+ +G P++GD  YG
Sbjct: 365 YRVIE-SSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYG 376

[Close]
BLAST of MELO3C011342.2.1 vs. TAIR10
Match: AT3G52260.3 (Pseudouridine synthase family protein)

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-11
Identity = 65/273 (23.81%), Postives = 117/273 (42.86%), Query Frame = 0 

Query: 103 VSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVV 162
           + ++G V+   +  +++G  +   +    P +       L+++YED+ ++ +NKP+ + V
Sbjct: 91  IQIDGEVVKDPNTLLRSGSKL---VYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQV 150

Query: 163 HPAPGNATGTLVNAILNHCSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGI 222
            P                  L  +    G++ S             + SR S  P+    
Sbjct: 151 LPG---------GLFQQRTVLTQLQWCFGKNDS------------YIGSRESPHPVP--- 210

Query: 223 VHRLDKGTSGLLVVAKDEHSHAHLSAQFKQ-----------------HSIERVYISLTCG 282
           VHRL +GTSG+L+ AK + +   L+A F +                   + ++Y +L  G
Sbjct: 211 VHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLVGSGNLDQECGTGRKLSKIYRALADG 270

Query: 283 VPPSTAGRIEIPI--CRDPNNRIRMTATHGTKNNPHAKHAASRYNVMEILAQGGSSLVEW 342
           +       I+ PI   R P       A      +P  K A S+  V+E   +   SLV+ 
Sbjct: 271 IVEEDEVVIKQPIGVVRYPG-----VAQGLYVASPEGKPAFSKVFVLERDREKNCSLVKV 330

Query: 343 RLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSM 357
            +++GR HQIR H  YMG PL+   ++ G++ +
Sbjct: 331 EIQSGRPHQIRIHLAYMGHPLVEMTMFTGSECL 331

[Close]
BLAST of MELO3C011342.2.1 vs. TAIR10
Match: AT5G51140.2 (Pseudouridine synthase family protein)

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-11
Identity = 72/282 (25.53%), Postives = 118/282 (41.84%), Query Frame = 0 

Query: 74  GKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPL 133
           GK  +D + +    G  R     ++++G + V+G ++  VS+ VK+   I   +   +P 
Sbjct: 73  GKTIVDLF-ADEFKGRPRDYYVGAVKSGRIKVDGEIV-PVSYIVKSSQKITHFLHRHEP- 132

Query: 134 RAEPEDI-DLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVSTSTGE 193
              P  I D+ I++++  V+ V KPA + VHP       T+V                  
Sbjct: 133 ---PVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVG----------------- 192

Query: 194 HQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQ 253
                 + D E     +F            +HRLD+  SGLL++A+          Q + 
Sbjct: 193 ------ILDAEHDLGTLFP-----------IHRLDRLVSGLLIIARTAAKADFFRQQIEG 252

Query: 254 HSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTA----THGTKNNPHAKHAASRYN 313
             +++ YI+   GV P     ++  I  +  +  R TA    + G       K A +++ 
Sbjct: 253 GMVKKRYIAKVIGVFPEDEMIVDANINYN-GSEGRSTAEDANSSGDDKKVKGKPACTKFT 311

Query: 314 VMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVY 351
              I   G  SLV     TGRTHQIR H +Y G P+  D +Y
Sbjct: 313 --RIDTNGTHSLVSCEPVTGRTHQIRVHLQYTGHPIANDPLY 311

[Close]
BLAST of MELO3C011342.2.1 vs. TAIR10
Match: AT1G56345.1 (Pseudouridine synthase family protein)

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-09
Identity = 59/245 (24.08%), Postives = 90/245 (36.73%), Query Frame = 0 

Query: 143 DIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVSTSTGEHQSDSDVSDD 202
           DI+YEDE+++ VNKP             G    A+L      ++ +S+  H         
Sbjct: 76  DILYEDEYLMAVNKP------------KGVYCEAVLRSAPQIVLDSSSEYH--------- 135

Query: 203 EFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISL 262
                              + +RLD+ TSG++++ K     A L   F +H I + YI+L
Sbjct: 136 -------------------LANRLDRDTSGVMIITKSHKVAAKLVKAFTEHKIRKSYIAL 195

Query: 263 TCGVPPS------------------------TAGRIEIP---ICRDPNNRIRMTATHGTK 322
             G  P+                          GR+ +P     RD      + + +  K
Sbjct: 196 CIGSSPNWRRVTVSSGHGRSKHGAWRVYAALDVGRV-LPGGSFVRDMETTFEVVSVNSVK 255

Query: 323 NNPHAKHAASRYNVME---ILAQGGSSLVEWRL-----ETGRTHQIRAHAKYMGIPLLGD 353
           N        +   V E    L+ G               +GRTHQIR H +Y+GIP+ GD
Sbjct: 256 NESCELEDVNHVIVAEGERELSCGXXXXXXXXXXRAFPRSGRTHQIRLHCQYLGIPIRGD 279

[Close]
BLAST of MELO3C011342.2.1 vs. Swiss-Prot
Match: sp|Q3ECD0|PUS2_ARATH (RNA pseudouridine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g76050 PE=2 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 5.0e-125
Identity = 249/398 (62.56%), Postives = 293/398 (73.62%), Query Frame = 0 

Query: 3   SVCSARTIQ--ASPS---SIHF-FFPRNRRRIDSNVLRFSANFSS--RCSDYDEYSEAQS 62
           S+ +A++++  +SPS   SI F FFP+      SN +R S+   +   CS     +E   
Sbjct: 11  SLTTAKSLRYPSSPSSSLSIFFSFFPK-----VSNFVRASSGIPNLVACSP----TEIII 70

Query: 63  ERIANYAGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVS 122
            R+ N AG R+EE VD   GK+RLDSWISSRING+SRARVQSSIR GLV+VNGRV+DKVS
Sbjct: 71  PRV-NNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVS 130

Query: 123 HNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLV 182
           HNVK+GD +NCTISELQPL+AE EDI LDIVYED+HVLVVNKPAHMVVHPAPGN TGTLV
Sbjct: 131 HNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLV 190

Query: 183 NAILNHCSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVS-EAPIRPGIVHRLDKGTSGL 242
           N IL+HCSLP V  S                           A +RPGIVHRLDKGT+GL
Sbjct: 191 NGILHHCSLPCVDYSNXXXXXXXXXXXXXXXXXXXXXXXXYAASVRPGIVHRLDKGTTGL 250

Query: 243 LVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHG 302
           LVVAKDEHSHAHL+ QFK H+IERVY+SLT GVP    GRIEIPI RD +NRIRM A  G
Sbjct: 251 LVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPG 310

Query: 303 TKNNPHAKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGT 362
                 A+HAASRY V+E  A GGS+LVEWRLETGRTHQIRAHAKYMG+PLLGDEVYGGT
Sbjct: 311 GVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGT 370

Query: 363 KSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLG 392
           KSMA+SLL+ R S +   ++++L+S ++RPCLHA+ LG
Sbjct: 371 KSMALSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLG 398

[Close]
BLAST of MELO3C011342.2.1 vs. Swiss-Prot
Match: sp|Q5Z8P2|PUS2_ORYSJ (RNA pseudouridine synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0717400 PE=2 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 1.1e-124
Identity = 235/367 (64.03%), Postives = 280/367 (76.29%), Query Frame = 0 

Query: 41  SRCSDYDEYSEAQS-ERIANYAGTRLEETVDINPGKVRLDSWISSRI--NGISRARVQSS 100
           +RC   D  +EA +  R   + GTRLEE V    G+ R+D+WIS+R+   G+SRAR+Q+S
Sbjct: 36  ARCLAADANAEAVAPSRRGGHGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQAS 95

Query: 101 IRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKP 160
           IRAGLV VNGR + KVSH VK GD+++CT+ ELQPLRAEPEDI LDIVYED+H+LVVNKP
Sbjct: 96  IRAGLVVVNGRPVSKVSHMVKGGDIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKP 155

Query: 161 AHMVVHPAPGNATGTLVNAILNHCSLP----MVSTSTGEHQSDS-----DVSD-DEFSSI 220
           AHMVVHPAPGNA GTLVNAIL+HC +     +   S  +   DS     DV D D+F++ 
Sbjct: 156 AHMVVHPAPGNANGTLVNAILHHCKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTG 215

Query: 221 EVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVP 280
           EV S V EA +RPGIVHRLDKGTSGLLVVAKDEHSHA L+ QFK H+I RVYISLTCG P
Sbjct: 216 EVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAP 275

Query: 281 PSTAGRIEIPICRDPNNRIRMTATHGTKNNPHAKHAASRYNVMEILAQGGSSLVEWRLET 340
              +GRIE+PI RDPNNRIRM AT G+  + +A+HAASRY V E+ A GGS+LVEWRLET
Sbjct: 276 NPNSGRIEVPIARDPNNRIRMIATPGS-GHRYARHAASRYKVREVFAGGGSALVEWRLET 335

Query: 341 GRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHA 395
           GRTHQIRAHAKY+GIPLLGDE YGGTKSMA+SLLR R  S  H  L  ++S ++RPCLHA
Sbjct: 336 GRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHA 395

[Close]
BLAST of MELO3C011342.2.1 vs. Swiss-Prot
Match: sp|P50513|RLUD_ZYMMO (Ribosomal large subunit pseudouridine synthase D OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rluD PE=3 SV=2)

HSP 1 Score: 190.7 bits (483), Expect = 3.2e-47
Identity = 127/316 (40.19%), Postives = 172/316 (54.43%), Query Frame = 0 

Query: 77  RLDSWISSRINGISRARVQSSIRAGLVS-VNGRVIDKVSHNVKAGDVINCTISELQPLRA 136
           RLD  ++S I  +SR R+++ I +G VS   G ++   +  +K+ D     I   +P   
Sbjct: 16  RLDRALASLITRLSRERLKNLISSGCVSNSQGALVRDPAFKIKSLDCFTVDIPLPRPAHN 75

Query: 137 EPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVSTSTGEHQS 196
           EP+DI L+IV+EDEH+LVVNKPA MVVHPA GN   TLVNA+L HC+        G+   
Sbjct: 76  EPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCA--------GKLSG 135

Query: 197 DSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSI 256
              V+                  RPGIVHR+DK TSGLLVVAK + +HA L+AQF  HSI
Sbjct: 136 IGGVA------------------RPGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSI 195

Query: 257 ERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHAKHAASRYNVMEILAQ 316
            R Y ++  G  PS  G ++ P+ R   NR +M       ++   K A + Y ++  L  
Sbjct: 196 NRRYRAIVDG-HPSLQGHVDAPLARSSVNRQKMAIV----SDGRGKRAVTHYRMITPLK- 255

Query: 317 GGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQ 376
             +SL+E RLETGRTHQ+R H   +G  LLGD VYG +K    +LL++ A          
Sbjct: 256 -NASLIECRLETGRTHQVRVHMSSIGHSLLGDPVYGRSKKAHHALLQSLA---------- 284

Query: 377 LVSSLERPCLHALTLG 392
                +R  LHA  LG
Sbjct: 316 ----FQRQALHAAHLG 284

[Close]
BLAST of MELO3C011342.2.1 vs. Swiss-Prot
Match: sp|Q9CKA6|RLUD_PASMU (Ribosomal large subunit pseudouridine synthase D OS=Pasteurella multocida (strain Pm70) OX=272843 GN=rluD PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-42
Identity = 111/316 (35.13%), Postives = 159/316 (50.32%), Query Frame = 0 

Query: 77  RLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAE 136
           RLD  ++      SR+R+++ I   LV VNG V++     V  G+ I   +      R E
Sbjct: 18  RLDQALAELFPDYSRSRLKTWIEQNLVHVNGDVVNVPRAKVYGGEQIEIVVEIDDDTRFE 77

Query: 137 PEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVSTSTGEHQSD 196
           PE++ L+IVYED+ +LV+NKP   VVHP  GNA+GT++NA+L H                
Sbjct: 78  PENLPLNIVYEDDDILVINKPKDFVVHPGAGNASGTVLNALLYH---------------- 137

Query: 197 SDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIE 256
                        +  ++E P R GIVHRLDK T+GL+V+AK   +   L    ++  I 
Sbjct: 138 -------------YPAIAEVP-RAGIVHRLDKDTTGLMVIAKTIPAQTKLVRDLQKRKIT 197

Query: 257 RVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHAKHAASRYNVMEILAQG 316
           R Y ++ CG+  +  G ++ P+ R P  R  M        +P  K A + Y +ME     
Sbjct: 198 REYEAIACGI-MTKGGMVDQPMARHPTKRTHMAV------HPMGKPAVTHYRIMERFR-- 257

Query: 317 GSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQL 376
             + +  RLETGRTHQIR H  ++  PLLGD+ YGG         R R   N   +LMQ 
Sbjct: 258 NYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQTYGG---------RPRPPKNASEELMQT 285

Query: 377 VSSLERPCLHALTLGL 393
           +   +R  LHA+ L L
Sbjct: 318 LRDFKRQALHAIMLRL 285

[Close]
BLAST of MELO3C011342.2.1 vs. Swiss-Prot
Match: sp|O67638|Y1758_AQUAE (Uncharacterized RNA pseudouridine synthase aq_1758 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_1758 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.0e-40
Identity = 98/275 (35.64%), Postives = 148/275 (53.82%), Query Frame = 0 

Query: 77  RLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAE 136
           RLD +++      SR+ ++  ++ GLV VNG  + K S  ++ G+ +   + E +PL  +
Sbjct: 17  RLDKFLARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRKLREGERVILHVPEPEPLDVK 76

Query: 137 PEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVSTSTGEHQSD 196
           PE+I ++I+YEDE + VV KP  +VVHP+PG  +GTLVNA+L H                
Sbjct: 77  PENIPINIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYHIK-------------- 136

Query: 197 SDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIE 256
                 + SSI           RPGIVHRLDK T+G++V+AK+  +H +L  QF++   E
Sbjct: 137 ------DLSSIGGVE-------RPGIVHRLDKETAGVMVIAKNNTAHRNLVRQFQERKTE 196

Query: 257 RVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHAKHAASRYNVMEILAQG 316
           + Y  L  G+     G I+ PI R P +R R             K A + Y V++   + 
Sbjct: 197 KFYKVLVKGLVKKDYGAIDTPIARHPVDRKRFWV------RKEGKEALTEYWVLKRYEKY 256

Query: 317 GSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYG 352
             +L++ ++ TGRTHQIR H   +G P+LGD  YG
Sbjct: 257 EITLLKVKIHTGRTHQIRVHFASIGHPVLGDRTYG 258

[Close]
BLAST of MELO3C011342.2.1 vs. TrEMBL
Match: tr|A0A1S3BCE4|A0A1S3BCE4_CUCME (Pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488386 PE=3 SV=1)

HSP 1 Score: 775.0 bits (2000), Expect = 8.1e-221
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0 

Query: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60
           MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY
Sbjct: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60

Query: 61  AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120
           AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG
Sbjct: 61  AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120

Query: 121 DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180
           DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 181 CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240
           CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 181 CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240

Query: 241 HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA 300
           HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA
Sbjct: 241 HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA 300

Query: 301 KHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL 360
           KHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL
Sbjct: 301 KHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL 360

Query: 361 LRTRASSNCHGQLMQLVSSLERPCLHALTLG 392
           LRTRASSNCHGQLMQLVSSLERPCLHALTLG
Sbjct: 361 LRTRASSNCHGQLMQLVSSLERPCLHALTLG 391

[Close]
BLAST of MELO3C011342.2.1 vs. TrEMBL
Match: tr|A0A1S3BD56|A0A1S3BD56_CUCME (Pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488386 PE=3 SV=1)

HSP 1 Score: 775.0 bits (2000), Expect = 8.1e-221
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0 

Query: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60
           MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY
Sbjct: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60

Query: 61  AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120
           AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG
Sbjct: 61  AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120

Query: 121 DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180
           DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH
Sbjct: 121 DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 181 CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240
           CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE
Sbjct: 181 CSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 240

Query: 241 HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA 300
           HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA
Sbjct: 241 HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPHA 300

Query: 301 KHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL 360
           KHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL
Sbjct: 301 KHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL 360

Query: 361 LRTRASSNCHGQLMQLVSSLERPCLHALTLG 392
           LRTRASSNCHGQLMQLVSSLERPCLHALTLG
Sbjct: 361 LRTRASSNCHGQLMQLVSSLERPCLHALTLG 391

[Close]
BLAST of MELO3C011342.2.1 vs. TrEMBL
Match: tr|A0A0A0LKD7|A0A0A0LKD7_CUCSA (Pseudouridine synthase OS=Cucumis sativus OX=3659 GN=Csa_2G346580 PE=3 SV=1)

HSP 1 Score: 739.2 bits (1907), Expect = 4.9e-210
Identity = 375/392 (95.66%), Postives = 383/392 (97.70%), Query Frame = 0 

Query: 1   MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRC-SDYDEYSEAQSERIAN 60
           MISVCSARTIQASPS IHFFFP NRRRI SNVLR S+NFS+RC SDYDEYSEAQSERIAN
Sbjct: 1   MISVCSARTIQASPSPIHFFFPPNRRRIGSNVLRISSNFSTRCSSDYDEYSEAQSERIAN 60

Query: 61  YAGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKA 120
           YAGTRLEETVD+NPGKVRLDSWIS RINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKA
Sbjct: 61  YAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKA 120

Query: 121 GDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILN 180
           GDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILN
Sbjct: 121 GDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILN 180

Query: 181 HCSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKD 240
           HCSLPMV+TSTGE++SDSDVSDDEFSSI VFSRVSEAPIRPGIVHRLDKGTSGLLVVAKD
Sbjct: 181 HCSLPMVATSTGENESDSDVSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKD 240

Query: 241 EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHGTKNNPH 300
           EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIE+PICRDPNNRIRMTA  GTKNNPH
Sbjct: 241 EHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPH 300

Query: 301 AKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMS 360
           AK+AASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMS
Sbjct: 301 AKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMS 360

Query: 361 LLRTRASSNCHGQLMQLVSSLERPCLHALTLG 392
           LLRTRASSNCHGQLMQLVSSLERPCLHALTLG
Sbjct: 361 LLRTRASSNCHGQLMQLVSSLERPCLHALTLG 392

[Close]
BLAST of MELO3C011342.2.1 vs. TrEMBL
Match: tr|A0A2N9FME9|A0A2N9FME9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15953 PE=4 SV=1)

HSP 1 Score: 509.6 bits (1311), Expect = 6.4e-141
Identity = 273/401 (68.08%), Postives = 316/401 (78.80%), Query Frame = 0 

Query: 1   MISVC-------SARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQ 60
           M+S+C       S++  Q SPS    F PRN  R  S +LR   NF++  S+  + S A 
Sbjct: 505 MLSLCYSSCSSSSSKLFQTSPSLFFPFSPRN-PRFPSRLLR---NFTASSSNEGQESLAV 564

Query: 61  SERIANYAGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKV 120
           + R ANY G  LEETVDI  GK+RLDSWISSRI+GISRARVQSSIR+GLVSVNGR++DKV
Sbjct: 565 AVRRANYGGVTLEETVDIKSGKLRLDSWISSRISGISRARVQSSIRSGLVSVNGRIVDKV 624

Query: 121 SHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTL 180
           SHNVKAGD +NCTISELQPL+AE E+I L+IVYEDEHVLVVNKPAHMVVHPAPGNA+GTL
Sbjct: 625 SHNVKAGDKVNCTISELQPLKAEAENIALNIVYEDEHVLVVNKPAHMVVHPAPGNASGTL 684

Query: 181 VNAILNHCSLPMVSTSTGEHQSDSDVSDDEFSSIEVFSRVSEAPIRPGIVHRLDKGTSGL 240
           VN IL+HCSLP          ++  +SDDEFS+ +    +S A IRPGIVHRLDKGTSGL
Sbjct: 685 VNGILHHCSLPF--------SNEEILSDDEFST-DQSPNISAASIRPGIVHRLDKGTSGL 744

Query: 241 LVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATHG 300
           LVVAKDEHSHAHLS QFK H+I+RVYISLT G+P   AGR+E+PI RD NNRIRM A  G
Sbjct: 745 LVVAKDEHSHAHLSEQFKLHTIQRVYISLTSGMPSPVAGRVEVPIGRDLNNRIRMAAIPG 804

Query: 301 TKNNPHAKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGT 360
           + N    +HAASRY V+EILA GGS+LVEWRLETGRTHQIRAHAKY+GIPLLGDEVYGGT
Sbjct: 805 SNNCRQTRHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGT 864

Query: 361 KSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGLEN 395
           KSMA+SLLR R + + HGQL+QLVS LERPCLHAL LG ++
Sbjct: 865 KSMALSLLRPRTAPSHHGQLLQLVSGLERPCLHALALGFKH 892

[Close]
BLAST of MELO3C011342.2.1 vs. TrEMBL
Match: tr|A0A2I4DLX8|A0A2I4DLX8_9ROSI (RNA pseudouridine synthase 2, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=LOC108981429 PE=4 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 4.1e-140
Identity = 272/402 (67.66%), Postives = 317/402 (78.86%), Query Frame = 0 

Query: 3   SVCSARTIQASPSSIHFFFPRNRRRIDSNV-LRFSANFSSRCSDYDEYSEAQSERIANYA 62
           S+  +   Q+SP     F PRN R   S++ + F A+ SS  ++ DE  E  + R AN+ 
Sbjct: 10  SLAKSFIFQSSP-PFFCFSPRNPRTPSSSLRICFVASSSSGSTNSDEDKEDLAGRRANFG 69

Query: 63  GTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGD 122
           G +LE+TV +N GK+RLDSWISSRI GISRARVQSSIR+GLV+VNGRV+DKVSHNVK GD
Sbjct: 70  GVQLEDTVSLNSGKLRLDSWISSRIGGISRARVQSSIRSGLVAVNGRVVDKVSHNVKTGD 129

Query: 123 VINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHC 182
            +NCTISELQPLRA PEDI LDIV+EDEHVLVVNKPAHMVVHPAPGNATGTLVN +L+HC
Sbjct: 130 KVNCTISELQPLRAVPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVNGVLHHC 189

Query: 183 SLPMVSTSTGEHQSDS-DVSDDEFSSIE--------VFSRVSEAPIRPGIVHRLDKGTSG 242
           S P+V+ S  E  SD+ D+SDDE SS          ++SR S A IRPGIVHRLDKGTSG
Sbjct: 190 SPPVVAFSNEEVLSDAEDISDDELSSFSAGQNPNDGLYSRRSGASIRPGIVHRLDKGTSG 249

Query: 243 LLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATH 302
           LLVVAKDEHSHA+LS QFK H+I+R+Y+SLT GVP   AGR+E+PI RD NNRIRM A  
Sbjct: 250 LLVVAKDEHSHANLSEQFKLHTIQRLYVSLTSGVPSPMAGRVEVPIGRDLNNRIRMAAIP 309

Query: 303 GTKNNPHAKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGG 362
           G+  +  A+HAASRY V+EILA G S+LVEWRLETGRTHQIRAHAKY+GIPLLGDEVYGG
Sbjct: 310 GSNISRQARHAASRYKVIEILAGGSSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGG 369

Query: 363 TKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGLEN 395
           TKSMA+SLLR R   + HGQL+QLVS LERPCLHAL LG E+
Sbjct: 370 TKSMALSLLRPRTPPSRHGQLLQLVSRLERPCLHALALGSED 410

The following BLAST results are available for this feature:
BLAST of MELO3C011342.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008445318.11.2e-220100.00PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Cucumis melo]... [more]
XP_008445320.11.2e-220100.00PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2 [Cucumis melo][more]
XP_011649465.17.5e-21095.66PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Cucumis sativ... [more]
XP_011649466.17.5e-21095.66PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2 [Cucumis sativ... [more]
XP_022142903.11.5e-18686.22RNA pseudouridine synthase 2, chloroplastic isoform X1 [Momordica charantia] >XP... [more]
BLAST of MELO3C011342.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G76050.22.8e-12662.56Pseudouridine synthase family protein[more]
AT3G19440.19.3e-1327.88Pseudouridine synthase family protein[more]
AT3G52260.33.9e-1123.81Pseudouridine synthase family protein[more]
AT5G51140.25.1e-1125.53Pseudouridine synthase family protein[more]
AT1G56345.12.8e-0924.08Pseudouridine synthase family protein[more]
BLAST of MELO3C011342.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q3ECD0|PUS2_ARATH5.0e-12562.56RNA pseudouridine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=A... [more]
sp|Q5Z8P2|PUS2_ORYSJ1.1e-12464.03RNA pseudouridine synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=3... [more]
sp|P50513|RLUD_ZYMMO3.2e-4740.19Ribosomal large subunit pseudouridine synthase D OS=Zymomonas mobilis subsp. mob... [more]
sp|Q9CKA6|RLUD_PASMU1.4e-4235.13Ribosomal large subunit pseudouridine synthase D OS=Pasteurella multocida (strai... [more]
sp|O67638|Y1758_AQUAE5.0e-4035.64Uncharacterized RNA pseudouridine synthase aq_1758 OS=Aquifex aeolicus (strain V... [more]
BLAST of MELO3C011342.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BCE4|A0A1S3BCE4_CUCME8.1e-221100.00Pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488386 PE=3 SV=1[more]
tr|A0A1S3BD56|A0A1S3BD56_CUCME8.1e-221100.00Pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488386 PE=3 SV=1[more]
tr|A0A0A0LKD7|A0A0A0LKD7_CUCSA4.9e-21095.66Pseudouridine synthase OS=Cucumis sativus OX=3659 GN=Csa_2G346580 PE=3 SV=1[more]
tr|A0A2N9FME9|A0A2N9FME9_FAGSY6.4e-14168.08Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15953 PE=4 SV=1[more]
tr|A0A2I4DLX8|A0A2I4DLX8_9ROSI4.1e-14067.66RNA pseudouridine synthase 2, chloroplastic isoform X1 OS=Juglans regia OX=51240... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom_sf
IPR006224PsdUridine_synth_RluC/D_CS
IPR006145PsdUridine_synth_RsuA/RluD
IPR006225PsdUridine_synth_RluC/D
IPR036986S4_RNA-bd_sf
IPR002942S4_RNA-bd
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016853 isomerase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C011342.2MELO3C011342.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C011342.2.1MELO3C011342.2.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C011342.2.1.exon.1MELO3C011342.2.1.exon.1exon
MELO3C011342.2.1.exon.2MELO3C011342.2.1.exon.2exon
MELO3C011342.2.1.exon.3MELO3C011342.2.1.exon.3exon
MELO3C011342.2.1.exon.4MELO3C011342.2.1.exon.4exon
MELO3C011342.2.1.exon.5MELO3C011342.2.1.exon.5exon
MELO3C011342.2.1.exon.6MELO3C011342.2.1.exon.6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C011342.2.1.CDS.1MELO3C011342.2.1.CDS.1CDS
MELO3C011342.2.1.CDS.2MELO3C011342.2.1.CDS.2CDS
MELO3C011342.2.1.CDS.3MELO3C011342.2.1.CDS.3CDS
MELO3C011342.2.1.CDS.4MELO3C011342.2.1.CDS.4CDS
MELO3C011342.2.1.CDS.5MELO3C011342.2.1.CDS.5CDS
MELO3C011342.2.1.CDS.6MELO3C011342.2.1.CDS.6CDS


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 76..138
e-value: 9.8E-7
score: 38.4
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 76..123
e-value: 2.9E-9
score: 36.4
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 76..149
score: 12.486
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 76..155
e-value: 9.19466E-14
score: 64.9634
IPR036986RNA-binding S4 domain superfamilyGENE3DG3DSA:3.10.290.10coord: 63..131
e-value: 1.6E-15
score: 58.4
IPR006225Pseudouridine synthase, RluC/RluDTIGRFAMTIGR00005TIGR00005coord: 76..374
e-value: 4.6E-70
score: 234.2
IPR006145Pseudouridine synthase, RsuA/RluB/C/D/E/FPFAMPF00849PseudoU_synth_2coord: 150..337
e-value: 3.5E-30
score: 105.1
IPR006145Pseudouridine synthase, RsuA/RluB/C/D/E/FCDDcd02869PseudoU_synth_RluCD_likecoord: 151..362
e-value: 7.5223E-61
score: 196.019
NoneNo IPR availablePANTHERPTHR44168:SF1RNA PSEUDOURIDINE SYNTHASE 2, CHLOROPLASTICcoord: 56..393
NoneNo IPR availablePANTHERPTHR44168FAMILY NOT NAMEDcoord: 56..393
NoneNo IPR availableSUPERFAMILYSSF55174Alpha-L RNA-binding motifcoord: 75..163
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 223..237
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILYSSF55120Pseudouridine synthasecoord: 136..180
coord: 213..394