MELO3C010713T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010713T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	VQ motif-containing protein, putative
Location	chr3 : 29055192 .. 29055908 (-)
Sequence length	717

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCCTCAACATCAACAACAACAAATCCATGGAAAGAGGGATAATCAAATCAACAACAATGCCAATAAACCATTGTCTCCACCGTCATTGAAGATCAATAAGGATTCTCATTTGATTCGGAAATCTTCCTCTTCTTCCAATACTTCTTCTCCATCTTCCTCTTCATCTTCCACTACCTCTCTTGTCAATGGCGTTCCCACCGCTGTCGCTAAGCCGCCTCAACGACATCCGGTGATTATATACACACATTCTCCCAAAATCATTCATACACATCCTCGAGATTTCATGGCCTTGGTTCAAAAGCTAACCGGAATGTCTCGATCTGATGATGAAGCTTCTACGAAAGCAACGGCGAAATCCGTCGATGAGAATAATAAAATATCTAAAGTTGTGAATGATGATAATGAATCGTCGTCTGTTTTGACGACGGATGAAAATTGCTGTAATGGTAGCGGATCAAGCGGTGCGGTGGAAGGTGGTCAGGTTAATTCGTGTTTTGGTCCGGCGAGTTTTGAGCCACCGCCACCACCACCACCACCTCCGCCACAACTGGCGAATTCTTACCTAACGAATATGCCGGTTTATGGGCCGAATTCGACGGAGTTTTTGTGCGGTAATCAACCGATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGTTCCAATATTCCTTCTCTTTCGTCCAACGGAATTAGTGATTTTAGCGAATTTTAG

mRNA sequence

ATGAGTCCTCAACATCAACAACAACAAATCCATGGAAAGAGGGATAATCAAATCAACAACAATGCCAATAAACCATTGTCTCCACCGTCATTGAAGATCAATAAGGATTCTCATTTGATTCGGAAATCTTCCTCTTCTTCCAATACTTCTTCTCCATCTTCCTCTTCATCTTCCACTACCTCTCTTGTCAATGGCGTTCCCACCGCTGTCGCTAAGCCGCCTCAACGACATCCGGTGATTATATACACACATTCTCCCAAAATCATTCATACACATCCTCGAGATTTCATGGCCTTGGTTCAAAAGCTAACCGGAATGTCTCGATCTGATGATGAAGCTTCTACGAAAGCAACGGCGAAATCCGTCGATGAGAATAATAAAATATCTAAAGTTGTGAATGATGATAATGAATCGTCGTCTGTTTTGACGACGGATGAAAATTGCTGTAATGGTAGCGGATCAAGCGGTGCGGTGGAAGGTGGTCAGGTTAATTCGTGTTTTGGTCCGGCGAGTTTTGAGCCACCGCCACCACCACCACCACCTCCGCCACAACTGGCGAATTCTTACCTAACGAATATGCCGGTTTATGGGCCGAATTCGACGGAGTTTTTGTGCGGTAATCAACCGATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGTTCCAATATTCCTTCTCTTTCGTCCAACGGAATTAGTGATTTTAGCGAATTTTAG

Coding sequence (CDS)

ATGAGTCCTCAACATCAACAACAACAAATCCATGGAAAGAGGGATAATCAAATCAACAACAATGCCAATAAACCATTGTCTCCACCGTCATTGAAGATCAATAAGGATTCTCATTTGATTCGGAAATCTTCCTCTTCTTCCAATACTTCTTCTCCATCTTCCTCTTCATCTTCCACTACCTCTCTTGTCAATGGCGTTCCCACCGCTGTCGCTAAGCCGCCTCAACGACATCCGGTGATTATATACACACATTCTCCCAAAATCATTCATACACATCCTCGAGATTTCATGGCCTTGGTTCAAAAGCTAACCGGAATGTCTCGATCTGATGATGAAGCTTCTACGAAAGCAACGGCGAAATCCGTCGATGAGAATAATAAAATATCTAAAGTTGTGAATGATGATAATGAATCGTCGTCTGTTTTGACGACGGATGAAAATTGCTGTAATGGTAGCGGATCAAGCGGTGCGGTGGAAGGTGGTCAGGTTAATTCGTGTTTTGGTCCGGCGAGTTTTGAGCCACCGCCACCACCACCACCACCTCCGCCACAACTGGCGAATTCTTACCTAACGAATATGCCGGTTTATGGGCCGAATTCGACGGAGTTTTTGTGCGGTAATCAACCGATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGTTCCAATATTCCTTCTCTTTCGTCCAACGGAATTAGTGATTTTAGCGAATTTTAG

Protein sequence

MSPQHQQQQIHGKRDNQINNNANKPLSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLVNGVPTAVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVDENNKISKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPPPPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSEF*

Homology

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BLAST of MELO3C010713T1 vs. Swiss-Prot
Match: VQ20_ARATH (VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-25
Identity = 96/290 (33.10%), Postives = 129/290 (44.48%), Query Frame = 1


Query: 3   PQHQQQQIHGKRDNQINNNA-----NKPLSPPSLKINKDSHLIRKSSSSSNTSSPSSSSS 62
           P H     H KR+   NN+      +   SPP+LK+NKDSH+I+K  S      PSS SS
Sbjct: 15  PHHHHH--HPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKKPPS------PSSFSS 74

Query: 63  STTSLVNGVPTAVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDE----- 122
           +            AKP  RHPVIIYTH+P+IIHT+P+DFMALVQKLTGM+ SD++     
Sbjct: 75  A------------AKP--RHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGN 134

Query: 123 -ASTKATAKSVDENNKISKVVNDDNES-----SSVLTTDENCCNGSG------------- 182
             +     KS++       V   +N +     ++ L       NG G             
Sbjct: 135 AMTDPGVVKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSE 194

Query: 183 SSGAVEGGQVNSCFGPASFEPPPPPP-------------PPPPQLAN-------SYLTNM 239
           SS  +   +     G  +   P                 PPPP + +       +YL   
Sbjct: 195 SSSVITTEENIGEHGQVNSSLPYSAVAIPPQPPPHPPPPPPPPSMYDAAGINYGAYLPTF 254

[Close]

BLAST of MELO3C010713T1 vs. TAIR10
Match: AT3G18360.1 (AT3G18360.1 VQ motif-containing protein)

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-26
Identity = 96/290 (33.10%), Postives = 129/290 (44.48%), Query Frame = 1


Query: 3   PQHQQQQIHGKRDNQINNNA-----NKPLSPPSLKINKDSHLIRKSSSSSNTSSPSSSSS 62
           P H     H KR+   NN+      +   SPP+LK+NKDSH+I+K  S      PSS SS
Sbjct: 15  PHHHHH--HPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKKPPS------PSSFSS 74

Query: 63  STTSLVNGVPTAVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDE----- 122
           +            AKP  RHPVIIYTH+P+IIHT+P+DFMALVQKLTGM+ SD++     
Sbjct: 75  A------------AKP--RHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGN 134

Query: 123 -ASTKATAKSVDENNKISKVVNDDNES-----SSVLTTDENCCNGSG------------- 182
             +     KS++       V   +N +     ++ L       NG G             
Sbjct: 135 AMTDPGVVKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSE 194

Query: 183 SSGAVEGGQVNSCFGPASFEPPPPPP-------------PPPPQLAN-------SYLTNM 239
           SS  +   +     G  +   P                 PPPP + +       +YL   
Sbjct: 195 SSSVITTEENIGEHGQVNSSLPYSAVAIPPQPPPHPPPPPPPPSMYDAAGINYGAYLPTF 254

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BLAST of MELO3C010713T1 vs. TAIR10
Match: AT1G21326.1 (AT1G21326.1 VQ motif-containing protein)

HSP 1 Score: 58.5 bits (140), Expect = 6.4e-09
Identity = 36/98 (36.73%), Postives = 49/98 (50.00%), Query Frame = 1


Query: 28  PPSLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLVNGVPTAVAKPPQRHPVIIYTHSPK 87
           P  LK+  DSH I K    +    P              P+    PP   PVIIYT SP+
Sbjct: 16  PIPLKVRGDSHKIIKKPPLA----PPHPQPQPPQTHQQEPSQSRPPPG--PVIIYTVSPR 75

Query: 88  IIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVDEN 126
           IIHTHP +FM LVQ+LTG + +   +S+ +++ S  ++
Sbjct: 76  IIHTHPNNFMTLVQRLTGKTSTSTTSSSYSSSTSAPKD 107

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BLAST of MELO3C010713T1 vs. NCBI nr
Match: gi|659089521|ref|XP_008445554.1| (PREDICTED: integrator complex subunit 6 homolog [Cucumis melo])

HSP 1 Score: 488.0 bits (1255), Expect = 9.2e-135
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 1


Query: 1   MSPQHQQQQIHGKRDNQINNNANKPLSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60
           MSPQHQQQQIHGKRDNQINNNANKPLSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSSTT
Sbjct: 1   MSPQHQQQQIHGKRDNQINNNANKPLSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60

Query: 61  SLVNGVPTAVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAK 120
           SLVNGVPTAVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAK
Sbjct: 61  SLVNGVPTAVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAK 120

Query: 121 SVDENNKISKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPPP 180
           SVDENNKISKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPPP
Sbjct: 121 SVDENNKISKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPPP 180

Query: 181 PPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSEF 239
           PPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSEF
Sbjct: 181 PPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSEF 238

[Close]

BLAST of MELO3C010713T1 vs. NCBI nr
Match: gi|778674275|ref|XP_004143051.2| (PREDICTED: VQ motif-containing protein 20-like [Cucumis sativus])

HSP 1 Score: 429.5 bits (1103), Expect = 3.9e-117
Identity = 222/241 (92.12%), Postives = 228/241 (94.61%), Query Frame = 1


Query: 1   MSPQHQQQQIHGKRDNQINNNANKPLSPPSL-KINKDSHLIRKSSSSSNTSSPSSSSSST 60
           MSPQ QQQQIHGKRDNQ NNNANKPLSPP L KINKDSHLIRKSSSSSNTSSPSSSSSST
Sbjct: 1   MSPQ-QQQQIHGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSST 60

Query: 61  TSLVNGV-PTAVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKAT 120
           TSL+NGV PTA AKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKAT
Sbjct: 61  TSLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKAT 120

Query: 121 AKSV-DENNKISKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPP 180
           AKSV DENNK SKVVNDDNESSSV+TTDENCC GSGSSGAVEGGQVNSCFGPA FEPPPP
Sbjct: 121 AKSVVDENNKASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPP 180

Query: 181 PPPPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSE 239
           PPPP  QLA+SYL+N+PVYGPNSTEFLCGNQPIFNYDDSLLF GSNIPSLSSNG+SDFSE
Sbjct: 181 PPPP--QLASSYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLF-GSNIPSLSSNGVSDFSE 237

[Close]

BLAST of MELO3C010713T1 vs. NCBI nr
Match: gi|659107464|ref|XP_008453685.1| (PREDICTED: protein MKS1 [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 6.0e-94
Identity = 192/252 (76.19%), Postives = 205/252 (81.35%), Query Frame = 1


Query: 1   MSPQHQQQQIHGKRDNQINNNANKP-LSPPSLKINKDSHLIRKSSSSSN--TSSPSSSSS 60
           MSPQ   QQIHGKRDNQINNN NKP L PP LKINKDSHLIRK+SSSSN  TSSPSSSSS
Sbjct: 1   MSPQ---QQIHGKRDNQINNNGNKPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSSSS 60

Query: 61  STTSLVNGVPTAVA---KPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDD-EA 120
           STTSLVNGV  A A   KP QRHPVIIYTHSPK+IHTHPRDFMALVQKLTGMSRSDD EA
Sbjct: 61  STTSLVNGVAAAAAAAAKPLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSDDHEA 120

Query: 121 STK-ATAKSV-DENNKISK----VVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCF 180
           STK AT K V DENN  +K    VV+DDNESSSV+TTDENCC G G SG +E GQVNSCF
Sbjct: 121 STKLATTKPVVDENNNNNKGSKAVVSDDNESSSVVTTDENCCGGGGGSGMMEVGQVNSCF 180

Query: 181 GPASFEPPPPPP-PPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPS 239
           GP  FEPPPPPP PPPPQLANSYLTN+P+Y PNS EFLC NQPIFNYDDSLLFGG+ +  
Sbjct: 181 GPVIFEPPPPPPSPPPPQLANSYLTNIPIYTPNSMEFLCANQPIFNYDDSLLFGGNRV-- 240

[Close]

BLAST of MELO3C010713T1 vs. NCBI nr
Match: gi|700208729|gb|KGN63825.1| (hypothetical protein Csa_1G023620 [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 1.9e-84
Identity = 176/241 (73.03%), Postives = 185/241 (76.76%), Query Frame = 1


Query: 1   MSPQHQQQQIHGKRDNQINNNAN-KP-LSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSS 60
           MSPQ QQQQIHGK DNQI NN N KP L PP LKINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60

Query: 61  TTSLVNGVPTAVAKPP-QRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKA 120
           TTSL NGV  A AKPP QRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+         KA
Sbjct: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGI------CCCKA 120

Query: 121 TAKSVDENNKISKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPP 180
                        VVNDDNESSSV+TTDENCC G GS G +E GQVNSCFGPA FE    
Sbjct: 121 A------------VVNDDNESSSVVTTDENCCGGGGS-GLMEVGQVNSCFGPAIFE---- 180

Query: 181 PPPPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSE 239
           PPPPPPQLANSYLTN+P+Y PNSTEFLC NQPIFNYDDSLLFGG+     S N   ++SE
Sbjct: 181 PPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNR----SVNDFCEYSE 214

[Close]

BLAST of MELO3C010713T1 vs. NCBI nr
Match: gi|802797564|ref|XP_012093056.1| (PREDICTED: VQ motif-containing protein 20 [Jatropha curcas])

HSP 1 Score: 209.5 bits (532), Expect = 6.3e-51
Identity = 123/233 (52.79%), Postives = 151/233 (64.81%), Query Frame = 1


Query: 21  NANKPLSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLVNGVPTAVAKP--PQRHP 80
           N N    PP LKINKDSH+I+KSSSSSN+S PSSSSSS+ S +  V  A   P  PQRHP
Sbjct: 7   NINNNNCPPPLKINKDSHMIKKSSSSSNSSPPSSSSSSSASSLTVVGPAKLPPQGPQRHP 66

Query: 81  VIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDE----ASTKATAKSVDENNKISKVV-- 140
           VIIYTHSPKIIHT+P+DFM LVQKLTG+SR +D+       + +  S DE +K  + +  
Sbjct: 67  VIIYTHSPKIIHTNPKDFMQLVQKLTGLSRPEDDHPPRVKQEKSNSSQDEESKNVRSIGN 126

Query: 141 -NDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPPPPPPQLANSYLT 200
            NDDNESSSV+ T+ENC       G++  GQVNSCF P  F+PP           N Y+T
Sbjct: 127 GNDDNESSSVI-TEENC------GGSIVDGQVNSCFAPPIFDPP-----------NPYMT 186

Query: 201 NMPVYGPNSTEFLCGNQPIFNYDDSLLFG----GSNIPSLSS--NGISDFSEF 239
           N+PV+ PNS +FLC NQP FNY DSL F      S+I S SS   GI++  E+
Sbjct: 187 NIPVFTPNSADFLCANQPFFNYTDSLFFNPPSVRSSISSSSSTLEGINELREY 221

The following BLAST results are available for this feature:

BLAST of MELO3C010713T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VQ20_ARATH	4.6e-25	33.10	VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1	[more]

BLAST of MELO3C010713T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18360.1	2.6e-26	33.10	VQ motif-containing protein	[more]
AT1G21326.1	6.4e-09	36.73	VQ motif-containing protein	[more]

BLAST of MELO3C010713T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089521\|ref\|XP_008445554.1\|	9.2e-135	100.00	PREDICTED: integrator complex subunit 6 homolog [Cucumis melo]	[more]
gi\|778674275\|ref\|XP_004143051.2\|	3.9e-117	92.12	PREDICTED: VQ motif-containing protein 20-like [Cucumis sativus]	[more]
gi\|659107464\|ref\|XP_008453685.1\|	6.0e-94	76.19	PREDICTED: protein MKS1 [Cucumis melo]	[more]
gi\|700208729\|gb\|KGN63825.1\|	1.9e-84	73.03	hypothetical protein Csa_1G023620 [Cucumis sativus]	[more]
gi\|802797564\|ref\|XP_012093056.1\|	6.3e-51	52.79	PREDICTED: VQ motif-containing protein 20 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C010713	MELO3C010713	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C010713T1	MELO3C010713T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C010713T1.cds1	MELO3C010713T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 83..107 score: 4.1
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 26..220 score: 6.6
None	No IPR available	PANTHER	PTHR33143:SF4	SUBFAMILY NOT NAMED	coord: 26..220 score: 6.6