MELO3C010470T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010470T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Proline--tRNA ligase
Location	chr7 : 8672022 .. 8672892 (-)
Sequence length	797

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGTTGATTGATTTATTTATGTTTTTGTGAGGAGGTGGGGAATTTGCAGTGGCAAGAACCAAACTCCGAAATTGGAAGCAAGAATGATATCTACAACTGCTGCGAGAATAGGGCGACCTTCTTCTTCACCGTTATCACTACTCTTGAAACCTCATACTTCTCGCCCGATTCTGACTCCATCTGCTTCATTTTCCTCTTCTCTTCCCTCTCGCAAACTCATTCTCTACTCCAAACCCGGATGCTGTTTGTGCGATGGCCTCAAAGAGAAACTACACGCCGCCTTTCTCCTCTCCGGCCCCGATTCTCTACACGACGTCCACTTACAGGCACTCGTTTCTTTTTCTTTTTTTTTTTTTTTGTAAGCTCTTCAATTTCATTTCTTCTGTTTTGTTTCAAGCAGGTGAGGGATATCACTACTAACCCTGAATGGGAGAGAGCTTACCAGTATGAGATTCCTGTGCTTGCGAAAGTCCGCTCTGATGGCTCGGAGGTTGGTTCTATTCATTCATTCTTGTTAATTCTGATTAGCACCACCCGATATTTTGTTTTTGGCGGTTATTGCTTATTCGGAAAGGGGGTGTGTCTATTTCAGATTTACGGAGCTCTTCTTTGCGCTCCTATCTAGAATTGTGCTTATGGATTTATAAAATGATCAATTTCTTGTGCATTGATTGTTTTGAAATCGTTGGCTTGAGTTGTACTGAATTTTCTTTATCCAAACTTCTGTGGTACTATGTCAGTAACCTCTTGTTCTTGCTTGTAACATTCGAGTTTGAGGTTCCAATGAGTTGGTCACCTCAGCTTCTGTTCTCACTCAATTTATTTTGGATCCAGTTGGGTCTGTGATCAATCTAATAAGGTTTTTATCAA

mRNA sequence

GAGGTTGATTGATTTATTTATGTTTTTGTGAGGAGGTGGGGAATTTGCAGTGGCAAGAACCAAACTCCGAAATTGGAAGCAAGAATGATATCTACAACTGCTGCGAGAATAGGGCGACCTTCTTCTTCACCGTTATCACTACTCTTGAAACCTCATACTTCTCGCCCGATTCTGACTCCATCTGCTTCATTTTCCTCTTCTCTTCCCTCTCGCAAACTCATTCTCTACTCCAAACCCGGATGCTGTTTGTGCGATGGCCTCAAAGAGAAACTACACGCCGCCTTTCTCCTCTCCGGCCCCGATTCTCTACACGACGTCCACTTACAGGTGAGGGATATCACTACTAACCCTGAATGGGAGAGAGCTTACCAGTATGAGATTCCTGTGCTTGCGAAAGTCCGCTCTGATGGCTCGGAGGTTGGTTCTATTCATTCATTCTTGTTAATTCTGATTAGCACCACCCGATATTTTGTTTTTGGCGGTTATTGCTTATTCGGAAAGGGGGTGTGTCTATTTCAGATTTACGGAGCTCTTCTTTGCGCTCCTATCTAGAATTGTGCTTATGGATTTATAAAATGATCAATTTCTTGTGCATTGATTGTTTTGAAATCGTTGGCTTGAGTTGTACTGAATTTTCTTTATCCAAACTTCTGTGGTACTATGTCAGTAACCTCTTGTTCTTGCTTGTAACATTCGAGTTTGAGGTTCCAATGAGTTGGTCACCTCAGCTTCTGTTCTCACTCAATTTATTTTGGATCCAGTTGGGTCTGTGATCAATCTAATAAGGTTTTTATCAA

Coding sequence (CDS)

ATGATATCTACAACTGCTGCGAGAATAGGGCGACCTTCTTCTTCACCGTTATCACTACTCTTGAAACCTCATACTTCTCGCCCGATTCTGACTCCATCTGCTTCATTTTCCTCTTCTCTTCCCTCTCGCAAACTCATTCTCTACTCCAAACCCGGATGCTGTTTGTGCGATGGCCTCAAAGAGAAACTACACGCCGCCTTTCTCCTCTCCGGCCCCGATTCTCTACACGACGTCCACTTACAGGTGAGGGATATCACTACTAACCCTGAATGGGAGAGAGCTTACCAGTATGAGATTCCTGTGCTTGCGAAAGTCCGCTCTGATGGCTCGGAGGTTGGTTCTATTCATTCATTCTTGTTAATTCTGATTAGCACCACCCGATATTTTGTTTTTGGCGGTTATTGCTTATTCGGAAAGGGGGTGTGTCTATTTCAGATTTACGGAGCTCTTCTTTGCGCTCCTATCTAG

Protein sequence

MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSEVGSIHSFLLILISTTRYFVFGGYCLFGKGVCLFQIYGALLCAPI*

Homology

[Close]

BLAST of MELO3C010470T1 vs. TrEMBL
Match: A0A0A0L383_CUCSA (Glutaredoxin-like protein OS=Cucumis sativus GN=Csa_4G365550 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.3e-53
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 1


Query: 1   MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLK 60
           MIS+TAA+IGRPSSSPLSLLLKP TSR ILTPSASFSSSLPSRKLILYSKPGCCLCDGLK
Sbjct: 1   MISSTAAKIGRPSSSPLSLLLKPQTSRRILTPSASFSSSLPSRKLILYSKPGCCLCDGLK 60

Query: 61  EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE 112
           EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE
Sbjct: 61  EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE 111

[Close]

BLAST of MELO3C010470T1 vs. TrEMBL
Match: B9GU56_POPTR (Glutaredoxin-like protein OS=Populus trichocarpa GN=POPTR_0002s08570g PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-33
Identity = 81/112 (72.32%), Postives = 88/112 (78.57%), Query Frame = 1


Query: 2   ISTTAARIGRPSSSPLSLLLKPHTSRPILTPSA--SFSSSLPSRKLILYSKPGCCLCDGL 61
           I+T AA   +PSS PL +  KP   + + TP A  S SSS   RKLILYSKPGCCLCDGL
Sbjct: 3   IATIAAVATKPSSIPLLIRKKP---KWVFTPLAFCSSSSSASRRKLILYSKPGCCLCDGL 62

Query: 62  KEKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE 112
           KEKL AAFLLSGP SLHDV LQVRDIT+NPEWERAYQYEIPVLAKV SDG+E
Sbjct: 63  KEKLQAAFLLSGPHSLHDVDLQVRDITSNPEWERAYQYEIPVLAKVLSDGTE 111

[Close]

BLAST of MELO3C010470T1 vs. TrEMBL
Match: B9NGD9_POPTR (Glutaredoxin-like protein OS=Populus trichocarpa GN=POPTR_0002s08570g PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-33
Identity = 81/112 (72.32%), Postives = 88/112 (78.57%), Query Frame = 1


Query: 2   ISTTAARIGRPSSSPLSLLLKPHTSRPILTPSA--SFSSSLPSRKLILYSKPGCCLCDGL 61
           I+T AA   +PSS PL +  KP   + + TP A  S SSS   RKLILYSKPGCCLCDGL
Sbjct: 3   IATIAAVATKPSSIPLLIRKKP---KWVFTPLAFCSSSSSASRRKLILYSKPGCCLCDGL 62

Query: 62  KEKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE 112
           KEKL AAFLLSGP SLHDV LQVRDIT+NPEWERAYQYEIPVLAKV SDG+E
Sbjct: 63  KEKLQAAFLLSGPHSLHDVDLQVRDITSNPEWERAYQYEIPVLAKVLSDGTE 111

[Close]

BLAST of MELO3C010470T1 vs. TrEMBL
Match: C6SXU3_SOYBN (Glutaredoxin-like protein OS=Glycine max GN=GLYMA_06G111500 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 7.9e-33
Identity = 75/99 (75.76%), Postives = 81/99 (81.82%), Query Frame = 1


Query: 14  SSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLKEKLHAAFLLSGPD 73
           SSPL LL      +    P +S SS+ PSRKL+LYSKPGCCLCDGLKEKLHAAFLLSG D
Sbjct: 16  SSPLLLLRGQKVFK--FRPFSSSSSAAPSRKLVLYSKPGCCLCDGLKEKLHAAFLLSGTD 75

Query: 74  SLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSEV 113
           SLHDV LQ+RDITTNPEWE AYQYEIPVLAKV SDG+EV
Sbjct: 76  SLHDVDLQIRDITTNPEWENAYQYEIPVLAKVLSDGTEV 112

[Close]

BLAST of MELO3C010470T1 vs. TrEMBL
Match: V4TCM8_9ROSI (Glutaredoxin-like protein OS=Citrus clementina GN=CICLE_v10002717mg PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 79/125 (63.20%), Postives = 93/125 (74.40%), Query Frame = 1


Query: 1   MISTTAARIGRPSSSPLSL-LLKPHTSR----PILTPSASFSSSLPSRKLILYSKPGCCL 60
           M    AA +    + PLSL L+    SR    P+   S+S SSS  +RKL+LYSKPGCCL
Sbjct: 25  MAIMAAATVATVVARPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSSTRKLVLYSKPGCCL 84

Query: 61  CDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSEVGSI 120
           CDGLKEKL AAFLLSGPDSLHDV LQVRDITTNPEWE++YQYEIPVLA+V SDG+EV + 
Sbjct: 85  CDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVTNE 144

[Close]

BLAST of MELO3C010470T1 vs. TAIR10
Match: AT4G08280.1 (AT4G08280.1 Thioredoxin superfamily protein)

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-32
Identity = 69/87 (79.31%), Postives = 72/87 (82.76%), Query Frame = 1


Query: 27  RPILTPSASFSSSLPS-RKLILYSKPGCCLCDGLKEKLHAAFLLS-GPDSLHDVHLQVRD 86
           RP+    +S SSS P+ RKL+LYSKPGCCLCDGLKEKLHAAF LS GPDSL+DV LQVRD
Sbjct: 16  RPLFCSLSSSSSSKPNTRKLVLYSKPGCCLCDGLKEKLHAAFTLSTGPDSLNDVTLQVRD 75

Query: 87  ITTNPEWERAYQYEIPVLAKVRSDGSE 112
           ITTNPEWERAYQYEIPVLAK  SDG E
Sbjct: 76  ITTNPEWERAYQYEIPVLAKENSDGKE 102

[Close]

BLAST of MELO3C010470T1 vs. NCBI nr
Match: gi|659086848|ref|XP_008444141.1| (PREDICTED: uncharacterized protein LOC103487576 isoform X1 [Cucumis melo])

HSP 1 Score: 227.3 bits (578), Expect = 1.9e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLK 60
           MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLK
Sbjct: 1   MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLK 60

Query: 61  EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSEV 113
           EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSEV
Sbjct: 61  EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSEV 112

[Close]

BLAST of MELO3C010470T1 vs. NCBI nr
Match: gi|659086850|ref|XP_008444142.1| (PREDICTED: uncharacterized protein LOC103487576 isoform X2 [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 5.6e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLK 60
           MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLK
Sbjct: 1   MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLK 60

Query: 61  EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE 112
           EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE
Sbjct: 61  EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE 111

[Close]

BLAST of MELO3C010470T1 vs. NCBI nr
Match: gi|659086852|ref|XP_008444143.1| (PREDICTED: uncharacterized protein LOC103487576 isoform X3 [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 5.6e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLK 60
           MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLK
Sbjct: 1   MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLK 60

Query: 61  EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE 112
           EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE
Sbjct: 61  EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE 111

[Close]

BLAST of MELO3C010470T1 vs. NCBI nr
Match: gi|778694434|ref|XP_011653807.1| (PREDICTED: uncharacterized protein LOC101215760 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 3.4e-53
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 1


Query: 1   MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSASFSSSLPSRKLILYSKPGCCLCDGLK 60
           MIS+TAA+IGRPSSSPLSLLLKP TSR ILTPSASFSSSLPSRKLILYSKPGCCLCDGLK
Sbjct: 1   MISSTAAKIGRPSSSPLSLLLKPQTSRRILTPSASFSSSLPSRKLILYSKPGCCLCDGLK 60

Query: 61  EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE 112
           EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE
Sbjct: 61  EKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSE 111

[Close]

BLAST of MELO3C010470T1 vs. NCBI nr
Match: gi|1009172098|ref|XP_015867087.1| (PREDICTED: uncharacterized protein LOC107404627 isoform X3 [Ziziphus jujuba])

HSP 1 Score: 157.1 bits (396), Expect = 2.4e-35
Identity = 81/114 (71.05%), Postives = 91/114 (79.82%), Query Frame = 1


Query: 1   MISTTAARIGRPSSSPLSLLLKPHTSRPILTPSA--SFSSSLPSRKLILYSKPGCCLCDG 60
           M    AA + RP+S    +LL    SR + TP A  S SS+LPSRKL+LYSKPGCCLCDG
Sbjct: 3   MAMAAAAAVARPTSR---ILLTTQKSRWVFTPLAFSSSSSALPSRKLVLYSKPGCCLCDG 62

Query: 61  LKEKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVLAKVRSDGSEV 113
           LKEKL AAFLLSGPDSLHDV LQ+RDIT+NPEWERAYQYEIPVLAKV SDG+E+
Sbjct: 63  LKEKLQAAFLLSGPDSLHDVDLQIRDITSNPEWERAYQYEIPVLAKVLSDGTEL 113

The following BLAST results are available for this feature:

BLAST of MELO3C010470T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L383_CUCSA	2.3e-53	96.40	Glutaredoxin-like protein OS=Cucumis sativus GN=Csa_4G365550 PE=3 SV=1	[more]
B9GU56_POPTR	2.7e-33	72.32	Glutaredoxin-like protein OS=Populus trichocarpa GN=POPTR_0002s08570g PE=3 SV=1	[more]
B9NGD9_POPTR	2.7e-33	72.32	Glutaredoxin-like protein OS=Populus trichocarpa GN=POPTR_0002s08570g PE=3 SV=1	[more]
C6SXU3_SOYBN	7.9e-33	75.76	Glutaredoxin-like protein OS=Glycine max GN=GLYMA_06G111500 PE=2 SV=1	[more]
V4TCM8_9ROSI	1.3e-32	63.20	Glutaredoxin-like protein OS=Citrus clementina GN=CICLE_v10002717mg PE=3 SV=1	[more]

BLAST of MELO3C010470T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G08280.1	2.7e-32	79.31	Thioredoxin superfamily protein	[more]

BLAST of MELO3C010470T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086848\|ref\|XP_008444141.1\|	1.9e-56	100.00	PREDICTED: uncharacterized protein LOC103487576 isoform X1 [Cucumis melo]	[more]
gi\|659086850\|ref\|XP_008444142.1\|	5.6e-56	100.00	PREDICTED: uncharacterized protein LOC103487576 isoform X2 [Cucumis melo]	[more]
gi\|659086852\|ref\|XP_008444143.1\|	5.6e-56	100.00	PREDICTED: uncharacterized protein LOC103487576 isoform X3 [Cucumis melo]	[more]
gi\|778694434\|ref\|XP_011653807.1\|	3.4e-53	96.40	PREDICTED: uncharacterized protein LOC101215760 [Cucumis sativus]	[more]
gi\|1009172098\|ref\|XP_015867087.1\|	2.4e-35	71.05	PREDICTED: uncharacterized protein LOC107404627 isoform X3 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008554	Glutaredoxin-like
IPR012336	Thioredoxin-like_fold

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C010470	MELO3C010470	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C010470T1	MELO3C010470T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C010470T1.cds2	MELO3C010470T1.cds2	CDS
MELO3C010470T1.cds1	MELO3C010470T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008554	Glutaredoxin-like	PFAM	PF05768	DUF836	coord: 44..110 score: 4.5
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 44..108 score: 2.5
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 39..113 score: 1.23
None	No IPR available	PANTHER	PTHR33558	FAMILY NOT NAMED	coord: 35..111 score: 3.1