MELO3C010414T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010414T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transmembrane protein
Location	chr7 : 9970291 .. 9971216 (+)
Sequence length	165

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGCCAACCTATGGTGATGATGGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGGTTTGTCTTCTTTCTTCTTAATGTATAACCATTACATGTCAGTTTCATGTATGTTTTTTATCTCCATTACATAAAGAATAGTTGTTGAGTATAAACCTAGCATATTTAATTTTTCTGTGACCCAAGTTTAAGGTGAGCGATATATTGCTTTGAAACTTTCAATTTTCTTTCTTGAACATATTACAGGATAGTGATACATAAGCAAGCTTGCTGCTTTAAGAGGAACATGCTTATTGGGTTTTTAAGTTTTCTGGTAAATGCTTCTGCTCCACTTGTTGCTTTGATCAGTTGATATGTTTACCATCACCAATGTGACAGAACAATTTTCTTATGGTAATATTTTTGGCCTACATAATATTGAGTGGTTTTGTGTGGGGTTTTTCCATTCAGTGGAAAATGTGGTGTTTATAATATGAATGAAGTAATTGAAAGAAACATATGGCTTTTCAATGACTTTTTTTCTTCTTTTAATCGTTTTATGAATCTTGTTCTGTCGCCTGCTTTTTTTTTTTTTGTTGTGTAAAACTAAGCATCCCTTCTCTCATTTCAACCTTTCTTTTTTAGTTAGTAATTGGTGATCTGTTATGTAACAAGCATTTGTTGTTTGTGGTTCTTCCTTGTTCTTTTACCGAAAAAATTATGGATTGACTTTAAAAAGAGGTTGGAATCCAATATGGTTAGCCTTCCATCTGTCAACAATTTATTGACATTTCAATAATTAATCGAAACATCTTGATGGTTTGTCTTGTTTTTTTTTGCAGCTACATGCATAATGTGATCTACATTACAAGGTTTGTGCAAATAATGTCAATCCTTTCCGAGAAGTTTTGGTACACAACCTTGTGGTAA

mRNA sequence

ATGGCAAAGCCAACCTATGGTGATGATGGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGCTACATGCATAATGTGATCTACATTACAAGGTTTGTGCAAATAATGTCAATCCTTTCCGAGAAGTTTTGGTACACAACCTTGTGGTAA

Coding sequence (CDS)

ATGGCAAAGCCAACCTATGGTGATGATGGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGCTACATGCATAATGTGATCTACATTACAAGGTTTGTGCAAATAATGTCAATCCTTTCCGAGAAGTTTTGGTACACAACCTTGTGGTAA

Protein sequence

MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTLW*

Homology

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BLAST of MELO3C010414T1 vs. Swiss-Prot
Match: TM208_DANRE (Transmembrane protein 208 OS=Danio rerio GN=tmem208 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-07
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMS-TGGICGYMHNVIYITRFVQIMSILSEKFWYTTLW 55
           MAKP + +DG LLDGG D++   G+  ++ +VI +T  VQ++S LS  FWY  LW
Sbjct: 74  MAKPAFAEDGSLLDGGIDLNMEQGMAEHLKDVILLTAIVQVLSTLSSYFWY--LW 126

[Close]

BLAST of MELO3C010414T1 vs. TrEMBL
Match: V4SSH1_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100129242mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414T1 vs. TrEMBL
Match: A0A067EGT6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414T1 vs. TrEMBL
Match: A0A067EQC8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414T1 vs. TrEMBL
Match: V4SML5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v100129242mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414T1 vs. TrEMBL
Match: A0A067EDE0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414T1 vs. TAIR10
Match: AT2G23940.1 (AT2G23940.1 Protein of unknown function (DUF788))

HSP 1 Score: 89.4 bits (220), Expect = 7.7e-19
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKP+  DDGEL+DGGFDM+TGGICGY+H+VIYIT FVQ+ SI++ KFWYT L
Sbjct: 68  MAKPSVTDDGELIDGGFDMTTGGICGYLHDVIYITCFVQLASIITGKFWYTYL 120

[Close]

BLAST of MELO3C010414T1 vs. TAIR10
Match: AT4G30500.1 (AT4G30500.1 Protein of unknown function (DUF788))

HSP 1 Score: 82.8 bits (203), Expect = 7.2e-17
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKP+  D GELLDGGFDMST G+CGY+H+V+YIT FVQ+ SI+S KFWY  L
Sbjct: 68  MAKPSVSDAGELLDGGFDMSTPGMCGYLHDVLYITCFVQVGSIISGKFWYAYL 120

[Close]

BLAST of MELO3C010414T1 vs. NCBI nr
Match: gi|641834108|gb|KDO53110.1| (hypothetical protein CISIN_1g0306652mg, partial [Citrus sinensis])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414T1 vs. NCBI nr
Match: gi|568853684|ref|XP_006480476.1| (PREDICTED: transmembrane protein 208 homolog [Citrus sinensis])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414T1 vs. NCBI nr
Match: gi|641834109|gb|KDO53111.1| (hypothetical protein CISIN_1g0306652mg [Citrus sinensis])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414T1 vs. NCBI nr
Match: gi|567872155|ref|XP_006428667.1| (hypothetical protein CICLE_v100129242mg [Citrus clementina])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414T1 vs. NCBI nr
Match: gi|659069921|ref|XP_008452429.1| (PREDICTED: transmembrane protein 208 homolog [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTYGDDGELLDGGFDMST GICGYMH+VIYIT FVQIMSILS KFWYT L
Sbjct: 68  MAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKFWYTYL 120

The following BLAST results are available for this feature:

BLAST of MELO3C010414T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TM208_DANRE	4.9e-07	47.27	Transmembrane protein 208 OS=Danio rerio GN=tmem208 PE=2 SV=1	[more]

BLAST of MELO3C010414T1 vs. TrEMBL


Match Name	E-value	Identity	Description
V4SSH1_9ROSI	1.0e-19	86.79	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100129242mg PE...	[more]
A0A067EGT6_CITSI	1.0e-19	86.79	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 ...	[more]
A0A067EQC8_CITSI	1.0e-19	86.79	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1	[more]
V4SML5_9ROSI	1.0e-19	86.79	Uncharacterized protein OS=Citrus clementina GN=CICLE_v100129242mg PE=4 SV=1	[more]
A0A067EDE0_CITSI	1.0e-19	86.79	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1	[more]

BLAST of MELO3C010414T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23940.1	7.7e-19	73.58	Protein of unknown function (DUF788)	[more]
AT4G30500.1	7.2e-17	69.81	Protein of unknown function (DUF788)	[more]

BLAST of MELO3C010414T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|641834108\|gb\|KDO53110.1\|	1.5e-19	86.79	hypothetical protein CISIN_1g0306652mg, partial [Citrus sinensis]	[more]
gi\|568853684\|ref\|XP_006480476.1\|	1.5e-19	86.79	PREDICTED: transmembrane protein 208 homolog [Citrus sinensis]	[more]
gi\|641834109\|gb\|KDO53111.1\|	1.5e-19	86.79	hypothetical protein CISIN_1g0306652mg [Citrus sinensis]	[more]
gi\|567872155\|ref\|XP_006428667.1\|	1.5e-19	86.79	hypothetical protein CICLE_v100129242mg [Citrus clementina]	[more]
gi\|659069921\|ref\|XP_008452429.1\|	1.5e-19	90.57	PREDICTED: transmembrane protein 208 homolog [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008506	SND2/TMEM208

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C010414	MELO3C010414	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C010414T1	MELO3C010414T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C010414T1.cds1	MELO3C010414T1.cds1	CDS
MELO3C010414T1.cds2	MELO3C010414T1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008506	Protein of unknown function DUF788, TMEM208	PANTHER	PTHR13505	FAMILY NOT NAMED	coord: 1..53 score: 2.5
IPR008506	Protein of unknown function DUF788, TMEM208	PFAM	PF05620	DUF788	coord: 1..53 score: 4.9
None	No IPR available	PANTHER	PTHR13505:SF7	TRANSMEMBRANE PROTEIN 208	coord: 1..53 score: 2.5