MELO3C010150T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C010150T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTransposon protein, putative, CACTA, En/Spm sub-class
Locationchr2 : 13909681 .. 13910169 (+)
Sequence length489
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACAAATTCATCGTCTCTCAATGGACACTATTCAAATGATGTCTTAACTCAAGCATTGGGGTTGAATGAGCACGATGGTCGTGTGCGTGGGGTTGGTGGATATGTTACTCCGACAATCTATTTTCATTCAGTTAAGAAAATATCAAAACACGAGGGGGATATTCTACTTGAGAATAAAGAATTCCAAAGGCAAGTTAGTGAATTAAAGGCACAAATTCACTCAAATTTGTCTACACCATTGTCTGCACACGAGAGTTGTTCAAAGCTAAATATCTTAGAGGGGATTGAGTCGAAAAAGCTTATGAAAGAGAAGAGTAAGTTGAAAGTTGAAGAGAAGAGTAAGAGAATAGAAATGGAATCGATGGACAAACCAAAAGAGAATGAAATGGAAGGGAAAGAGATGGAGCAGATCAACATGAATGTCAATGAAACAGAGTTTAACTTCTTCAAGGTGCGTAATCCACTATTAAATCGGAATGTCTAA

mRNA sequence

ATGAATACAAATTCATCGTCTCTCAATGGACACTATTCAAATGATGTCTTAACTCAAGCATTGGGGTTGAATGAGCACGATGGTCGTGTGCGTGGGGTTGGTGGATATGTTACTCCGACAATCTATTTTCATTCAGTTAAGAAAATATCAAAACACGAGGGGGATATTCTACTTGAGAATAAAGAATTCCAAAGGCAAGTTAGTGAATTAAAGGCACAAATTCACTCAAATTTGTCTACACCATTGTCTGCACACGAGAGTTGTTCAAAGCTAAATATCTTAGAGGGGATTGAGTCGAAAAAGCTTATGAAAGAGAAGAGTAAGTTGAAAGTTGAAGAGAAGAGTAAGAGAATAGAAATGGAATCGATGGACAAACCAAAAGAGAATGAAATGGAAGGGAAAGAGATGGAGCAGATCAACATGAATGTCAATGAAACAGAGTTTAACTTCTTCAAGGTGCGTAATCCACTATTAAATCGGAATGTCTAA

Coding sequence (CDS)

ATGAATACAAATTCATCGTCTCTCAATGGACACTATTCAAATGATGTCTTAACTCAAGCATTGGGGTTGAATGAGCACGATGGTCGTGTGCGTGGGGTTGGTGGATATGTTACTCCGACAATCTATTTTCATTCAGTTAAGAAAATATCAAAACACGAGGGGGATATTCTACTTGAGAATAAAGAATTCCAAAGGCAAGTTAGTGAATTAAAGGCACAAATTCACTCAAATTTGTCTACACCATTGTCTGCACACGAGAGTTGTTCAAAGCTAAATATCTTAGAGGGGATTGAGTCGAAAAAGCTTATGAAAGAGAAGAGTAAGTTGAAAGTTGAAGAGAAGAGTAAGAGAATAGAAATGGAATCGATGGACAAACCAAAAGAGAATGAAATGGAAGGGAAAGAGATGGAGCAGATCAACATGAATGTCAATGAAACAGAGTTTAACTTCTTCAAGGTGCGTAATCCACTATTAAATCGGAATGTCTAA

Protein sequence

MNTNSSSLNGHYSNDVLTQALGLNEHDGRVRGVGGYVTPTIYFHSVKKISKHEGDILLENKEFQRQVSELKAQIHSNLSTPLSAHESCSKLNILEGIESKKLMKEKSKLKVEEKSKRIEMESMDKPKENEMEGKEMEQINMNVNETEFNFFKVRNPLLNRNV*
Homology
[Close]
BLAST of MELO3C010150T1 vs. NCBI nr
Match: gi|659109765|ref|XP_008454865.1| (PREDICTED: trans-resveratrol di-O-methyltransferase-like [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1 

Query: 1  MNTNSSSLNGHYSNDVLTQALGLNEHDGRVRGVGGYVTPTIYFHSVKKISKHEGDILLEN 60
          MNT+SSS+N +YSNDVLTQALG  EH+GRVRG+G YVTP  Y+HSVKK SK E +I+LE 
Sbjct: 1  MNTDSSSMNRYYSNDVLTQALGTKEHNGRVRGIGEYVTPITYYHSVKKTSKDEVNIVLEI 60

Query: 61 KEFQRQVSELKAQIH 76
          +E +R+   L+AQ H
Sbjct: 61 EELRRRDELLEAQAH 75

[Close]
BLAST of MELO3C010150T1 vs. NCBI nr
Match: gi|778708464|ref|XP_011656204.1| (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1 

Query: 17  LTQALGLNEHDGRVRGVGGYVTPTIYFHSVKKISKHEGDI---LLENKEFQRQVSELKAQ 76
           L QALG NEH GRVRGVGG+VT T YFH+ K   K   +I     EN++    V EL++ 
Sbjct: 137 LAQALGTNEHSGRVRGVGGFVTRTAYFHTSKHSKKQSENIEKLREENEKLCLGVQELESI 196

Query: 77  IHSNLSTPLSAHESCSKLNILEGIESK-KLMKEKSKLKVEEKSKRI 119
             +  STP  AH SCS+  +   I+ K KL +EK  +  ++  +R+
Sbjct: 197 HLTTQSTPTYAHASCSRPRLEYDIQPKEKLQEEKMNITTKDAMERL 242

The following BLAST results are available for this feature:
BLAST of MELO3C010150T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109765|ref|XP_008454865.1|1.1e-1764.00PREDICTED: trans-resveratrol di-O-methyltransferase-like [Cucumis melo][more]
gi|778708464|ref|XP_011656204.1|1.7e-1042.45PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C010150MELO3C010150gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C010150T1MELO3C010150T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C010150T1.cds1MELO3C010150T1.cds1CDS