MELO3C010145T3 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010145T3
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Golgi apparatus membrane protein TVP23
Location	chr2 : 13822830 .. 13823858 (-)
Sequence length	1029

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCTCATCTCTGTTTCTCTCCCATCACCCAACAAATCCCACTCTCAATTCTTATCCCCTTATTTCTCTACTCCTTTCAGAACCAGGTACCCAATCCGCCCTCGCAGATGCAACTTCATATTCACCAGCAAACGCCTCAATTTCGTCTCAAATGGGTATCGGCTACAACTTCTTGGCTTCCCTACAGGGTCCAGAAGCTCGAAGGCTTTACAACAACGTGGAGTAGCTGACAAATCGATTTTCGAGGACTTTAGTGTTTCAAATTTCGTTAGTTTGTCTATACATGATAACAAGAATGATGAGTCTATGCTCAATTTTATTGCCAAGCCAGTTGTGTATACATTGTTCTGTATTGCTGTTGGATTTGTTCCTTTTAGGACAGTTAAAGCTCCTGCAATTGCAGCTCAAGTAGTTGCGGACAGGGTTTTGAACAAGAAAACCAATGAGGAGGAGGTTGAATCGAACTTGAGGGGTCATAAGTACTCAGACTACACGAGGCAGCTGCTCAAGGCGGTGTCAGGTGTATCGAGGAGTATAGAAGAGGCTAGAAAGGGTAATTGCAGTTTAGAAGAGGTGGAGATGGCACTGAAGGCAGTGAAGTTGAAGAAAGTGAAGTTGCAAGAAGGAATTTTGAACGAGCTTTATAGACAACTGAGGGATCTAAAGAGGGAGAAAGCGGGTTTGGAAATGAGATTGGGGGAGATTGTTGATGAGGTGGTGAAAGCTAAGTGGGCGTATGACAGCTTGGTGGAGAATGGATCTAGAGGTGGGGAGGCCAGGGAGAGGATGGCCGGGTTGGAGCAGATAGTGAGAAAGTTGGAGGTGGAGTATAATGAGAGATGGGAGAGTGTAGGGGAGATTGGGGATAAAATTTTGAGGAGAGAGACCGAAGCATTGAGTTTTGGGGTGAGGGAGCTATGCTTCATTGAGCGGGAATGTGACCAACTGGTGAAGAGATTTACCCGGGAAATGAAAGCCAGAGGGAAGGATACTAACGGGTACGACCACAAACTTTACTTTATGTGA

mRNA sequence

ATGGACCTCATCTCTGTTTCTCTCCCATCACCCAACAAATCCCACTCTCAATTCTTATCCCCTTATTTCTCTACTCCTTTCAGAACCAGGTACCCAATCCGCCCTCGCAGATGCAACTTCATATTCACCAGCAAACGCCTCAATTTCGTCTCAAATGGGTATCGGCTACAACTTCTTGGCTTCCCTACAGGGTCCAGAAGCTCGAAGGCTTTACAACAACGTGGAGTAGCTGACAAATCGATTTTCGAGGACTTTAGTGTTTCAAATTTCGTTAGTTTGTCTATACATGATAACAAGAATGATGAGTCTATGCTCAATTTTATTGCCAAGCCAGTTGTGTATACATTGTTCTGTATTGCTGTTGGATTTGTTCCTTTTAGGACAGTTAAAGCTCCTGCAATTGCAGCTCAAGTAGTTGCGGACAGGGTTTTGAACAAGAAAACCAATGAGGAGGAGGTTGAATCGAACTTGAGGGGTCATAAGTACTCAGACTACACGAGGCAGCTGCTCAAGGCGGTGTCAGGTGTATCGAGGAGTATAGAAGAGGCTAGAAAGGGTAATTGCAGTTTAGAAGAGGTGGAGATGGCACTGAAGGCAGTGAAGTTGAAGAAAGTGAAGTTGCAAGAAGGAATTTTGAACGAGCTTTATAGACAACTGAGGGATCTAAAGAGGGAGAAAGCGGGTTTGGAAATGAGATTGGGGGAGATTGTTGATGAGGTGGTGAAAGCTAAGTGGGCGTATGACAGCTTGGTGGAGAATGGATCTAGAGGTGGGGAGGCCAGGGAGAGGATGGCCGGGTTGGAGCAGATAGTGAGAAAGTTGGAGGTGGAGTATAATGAGAGATGGGAGAGTGTAGGGGAGATTGGGGATAAAATTTTGAGGAGAGAGACCGAAGCATTGAGTTTTGGGGTGAGGGAGCTATGCTTCATTGAGCGGGAATGTGACCAACTGGTGAAGAGATTTACCCGGGAAATGAAAGCCAGAGGGAAGGATACTAACGGGTACGACCACAAACTTTACTTTATGTGA

Coding sequence (CDS)

ATGGACCTCATCTCTGTTTCTCTCCCATCACCCAACAAATCCCACTCTCAATTCTTATCCCCTTATTTCTCTACTCCTTTCAGAACCAGGTACCCAATCCGCCCTCGCAGATGCAACTTCATATTCACCAGCAAACGCCTCAATTTCGTCTCAAATGGGTATCGGCTACAACTTCTTGGCTTCCCTACAGGGTCCAGAAGCTCGAAGGCTTTACAACAACGTGGAGTAGCTGACAAATCGATTTTCGAGGACTTTAGTGTTTCAAATTTCGTTAGTTTGTCTATACATGATAACAAGAATGATGAGTCTATGCTCAATTTTATTGCCAAGCCAGTTGTGTATACATTGTTCTGTATTGCTGTTGGATTTGTTCCTTTTAGGACAGTTAAAGCTCCTGCAATTGCAGCTCAAGTAGTTGCGGACAGGGTTTTGAACAAGAAAACCAATGAGGAGGAGGTTGAATCGAACTTGAGGGGTCATAAGTACTCAGACTACACGAGGCAGCTGCTCAAGGCGGTGTCAGGTGTATCGAGGAGTATAGAAGAGGCTAGAAAGGGTAATTGCAGTTTAGAAGAGGTGGAGATGGCACTGAAGGCAGTGAAGTTGAAGAAAGTGAAGTTGCAAGAAGGAATTTTGAACGAGCTTTATAGACAACTGAGGGATCTAAAGAGGGAGAAAGCGGGTTTGGAAATGAGATTGGGGGAGATTGTTGATGAGGTGGTGAAAGCTAAGTGGGCGTATGACAGCTTGGTGGAGAATGGATCTAGAGGTGGGGAGGCCAGGGAGAGGATGGCCGGGTTGGAGCAGATAGTGAGAAAGTTGGAGGTGGAGTATAATGAGAGATGGGAGAGTGTAGGGGAGATTGGGGATAAAATTTTGAGGAGAGAGACCGAAGCATTGAGTTTTGGGGTGAGGGAGCTATGCTTCATTGAGCGGGAATGTGACCAACTGGTGAAGAGATTTACCCGGGAAATGAAAGCCAGAGGGAAGGATACTAACGGGTACGACCACAAACTTTACTTTATGTGA

Protein sequence

MDLISVSLPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLLGFPTGSRSSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTLFCIAVGFVPFRTVKAPAIAAQVVADRVLNKKTNEEEVESNLRGHKYSDYTRQLLKAVSGVSRSIEEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLGEIVDEVVKAKWAYDSLVENGSRGGEARERMAGLEQIVRKLEVEYNERWESVGEIGDKILRRETEALSFGVRELCFIERECDQLVKRFTREMKARGKDTNGYDHKLYFM*

Homology

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BLAST of MELO3C010145T3 vs. Swiss-Prot
Match: FTSI5_ARATH (Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana GN=FTSHI5 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 8.5e-49
Identity = 137/337 (40.65%), Postives = 188/337 (55.79%), Query Frame = 1


Query: 1   MDLISVS-LPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLL 60
           MD IS S L SP    S  LSP + +        R R  N  F S+  N  S    + + 
Sbjct: 1   MDFISASSLSSP---FSTQLSPIYLSSGIVSLKPRHRVKNRNFGSRESNNKSRKI-VPIR 60

Query: 61  GFPTGSRSSKALQQRGVADKSIFEDFSV---SNFVSLSIHDN--KNDESMLNFIAKPVVY 120
           G    S S    +Q     +++ E   +    N + LS   N  K  ES++ F+ KP+VY
Sbjct: 61  GCFGFSGSFLRSKQSDYGSEAVSESLRLCGEGNELVLSSEYNSAKTRESVIQFVTKPLVY 120

Query: 121 TLFCIAVGFVPFRTVKAPAIAAQVVADRVLNKK---TNEEEVESNLRGHKYSDYTRQLLK 180
            LFCIA+G  P R+ +APA+A   V+D +  KK     E+EV      H++SDYTR+LL+
Sbjct: 121 ALFCIAIGLSPIRSFQAPALAVPFVSDVIWKKKKERVREKEVVLKAVDHEFSDYTRRLLE 180

Query: 181 AVSGVSRSIEEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEM 240
            VS + ++IE  RK N  + EV  AL AVK++K KLQ+ I++ LYR +R L++E+  L  
Sbjct: 181 TVSVLLKTIEIVRKENGEVAEVGAALDAVKVEKEKLQKEIMSGLYRDMRRLRKERDLLMK 240

Query: 241 RLGEIVDEVVKAKWAYDSLVENGSRGGEARERMAGLEQIVRKLEVEYNERWESVGEIGDK 300
           R  +IVDE +  K   + L+  G     ARE+M  LE+ V  +E EYN+ WE + EI D 
Sbjct: 241 RADKIVDEALSLKKQSEKLLRKG-----AREKMEKLEESVDIMESEYNKIWERIDEIDDI 300

Query: 301 ILRRETEALSFGVRELCFIERECDQLVKRFTREMKAR 329
           IL++ET  LSFGVREL FIEREC +LVK F RE+  +
Sbjct: 301 ILKKETTTLSFGVRELIFIERECVELVKSFNRELNQK 328

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BLAST of MELO3C010145T3 vs. TrEMBL
Match: A0A0A0M0C3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G674540 PE=4 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 1.3e-144
Identity = 278/339 (82.01%), Postives = 293/339 (86.43%), Query Frame = 1


Query: 1   MDLISVSLPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLLG 60
           MDLI  SLP PNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFT K LN VSNG RLQ LG
Sbjct: 1   MDLICASLPLPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTRKCLNLVSNGSRLQFLG 60

Query: 61  FPTGSRSSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTLFCIA 120
           FPTG RSSKALQQRGV DKSI EDFSVSNFVSLSIHDNK DESMLN IAKPVVYTLFCIA
Sbjct: 61  FPTGPRSSKALQQRGVVDKSISEDFSVSNFVSLSIHDNKIDESMLNCIAKPVVYTLFCIA 120

Query: 121 VGFVPFRTVKAPAIAAQVVADRVLNKKTNEEEVESNLRGHKYSDYTRQLLKAVSGVSRSI 180
           VGFVPFRTVKAPAIAAQVVADRV +KK   EEVESNLRGH+YS++TRQLL+AVS VS SI
Sbjct: 121 VGFVPFRTVKAPAIAAQVVADRVFDKKA-YEEVESNLRGHEYSEFTRQLLEAVSYVSMSI 180

Query: 181 EEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLGEIVDEV 240
           EEARKGNCS+E+VEMALK VKL KVKLQEGILN L+ QLRDLKREK GLE RL  +V+EV
Sbjct: 181 EEARKGNCSVEQVEMALKTVKLYKVKLQEGILNYLHTQLRDLKREKVGLERRLEGVVNEV 240

Query: 241 VKAKWAYDSLVEN-GSRGGEA-----RERMAGLEQIVRKLEVEYNERWESVGEIGDKILR 300
           V+AKW Y+ LVE  GS   E+     RERMA LEQI+R LEVEYNE WE VGEIGD I R
Sbjct: 241 VEAKWEYERLVEKMGSSRKESKERMDRERMARLEQIMRMLEVEYNEIWERVGEIGDIIFR 300

Query: 301 RETEALSFGVRELCFIERECDQLVKRFTREMKARGKDTN 334
           RET ALSFGVRELCFIERECDQLVKRFTREM+ARGKDTN
Sbjct: 301 RETVALSFGVRELCFIERECDQLVKRFTREMRARGKDTN 338

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BLAST of MELO3C010145T3 vs. TrEMBL
Match: B9S7N3_RICCO (Metalloprotease m41 ftsh, putative OS=Ricinus communis GN=RCOM_0610060 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.0e-53
Identity = 133/334 (39.82%), Postives = 198/334 (59.28%), Query Frame = 1


Query: 3   LISVSLPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLLGFP 62
           + S+S+PS     S F  P+   P +T +  +  +  +  +++ L F+   ++  +  FP
Sbjct: 1   MASLSIPS----FSHFSPPFKIPPSQTTHKFKITKI-YSHSNRALPFL---HKFHVFSFP 60

Query: 63  TGSRSSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTLFCIAVG 122
             S+  K  Q+  +  K +   FS            +++ES++  I +P+VY LFCIA+G
Sbjct: 61  EASKCHKTKQEPSLHQKKL--SFSTGYLT-------RHEESVIQCITRPIVYALFCIAIG 120

Query: 123 FVPFRTVKAPAIAAQVVADRVLNKKTNEEEVESN----LRGHKYSDYTRQLLKAVSGVSR 182
           F    +  A A  A+ VA  V+  K  E+E + N     +GH+YSDY+R LL  VS + +
Sbjct: 121 FCSVGSFPAYAAVAEQVASEVIELKKKEKEKKLNEEKYSKGHEYSDYSRNLLAEVSVLLK 180

Query: 183 SIEEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLGEIVD 242
            IEE R+ N   EEV++ALKAVK KK  LQ  IL  LY ++R+LK+EK  LE R  +I+D
Sbjct: 181 CIEETRRRNGDSEEVDLALKAVKAKKEGLQGQILEGLYSEVRELKKEKESLEKRADKILD 240

Query: 243 EVVKAKWAYDSLVENGSRGGEARERMAGLEQIVRKLEVEYNERWESVGEIGDKILRRETE 302
           E +KA+  Y++L  N  +G     RM  LE+ +  +E EY+  WE VGEI D ILRRET 
Sbjct: 241 EGLKARREYETLGINAEKG-----RMEELEERMGVIEEEYSGVWEKVGEIEDAILRRETM 300

Query: 303 ALSFGVRELCFIERECDQLVKRFTREMKARGKDT 333
           A+S G+RELCFIEREC++LVKRF +EM+ + K++
Sbjct: 301 AMSVGIRELCFIERECEELVKRFNQEMRRKSKES 312

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BLAST of MELO3C010145T3 vs. TrEMBL
Match: W9RHH7_9ROSA (ATP-dependent zinc metalloprotease FtsH OS=Morus notabilis GN=L484_024479 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.8e-53
Identity = 144/338 (42.60%), Postives = 190/338 (56.21%), Query Frame = 1


Query: 1   MDLISVSLPSPNKSHSQFLSPY----FSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRL 60
           MD I  S   P+     F SP+         RTR  IR +R    +   R  F   GY  
Sbjct: 1   MDAILASRLLPSHFSPLFSSPHRNPSLPLSLRTRR-IRIQRLPSKWPKFRPKFSPVGYNF 60

Query: 61  QLLGFPTGSRSSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTL 120
            +      SRSS   +Q    +                    + D  +L  IAK +   L
Sbjct: 61  IVFSSLEASRSSPCSKQAPKEEAV------------------EPDGRLLKCIAKRIALAL 120

Query: 121 FCIAVGFVPFRTVKAPAIAAQVVADRVLNKKTNEE--EVESNLRGHKYSDYTRQLLKAVS 180
           FC A+GF P R ++  A+AA   A  VL KK NEE  E ES   GH+YSDYTR+LL+ VS
Sbjct: 121 FCFAIGFAPIRPLRVTAVAAP--AAEVLEKKENEEAREKESKSEGHEYSDYTRRLLQTVS 180

Query: 181 GVSRSIEEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLG 240
            + R++EEARKGN  +++VE ALKAVK KK +LQ  I++ LY +L++L  EK  LE R  
Sbjct: 181 FLLRAVEEARKGNGDVKQVEEALKAVKAKKAELQNEIVDGLYAELKELNGEKERLEKRAD 240

Query: 241 EIVDEVVKAKWAYDSLVENGSRGGEARERMAGLEQIVRKLEVEYNERWESVGEIGDKILR 300
           +IV+E  K K  YD  + +GS   E RE M  LE+ +++L+ EYN  WE VGEI D+ILR
Sbjct: 241 KIVEEATKVKKEYD--MSSGSADKERREEMERLEENLKRLDGEYNWIWERVGEIEDRILR 300

Query: 301 RETEALSFGVRELCFIERECDQLVKRFTREMKARGKDT 333
           RET ALSFG REL FIE EC++LV+ FTREM+ +  ++
Sbjct: 301 RETVALSFGARELSFIEMECEELVQCFTREMRKKSMES 315

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BLAST of MELO3C010145T3 vs. TrEMBL
Match: D7TUI7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g02190 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.3e-53
Identity = 136/326 (41.72%), Postives = 193/326 (59.20%), Query Frame = 1


Query: 6   VSLPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLLGFPTGS 65
           +S P  N S   F +    +P + ++  R RR      ++  N +        + FP  S
Sbjct: 15  LSPPYRNSSRPSFFTFNSFSPAK-KHRARTRRFLVKSPNRTRNLLPIASVFHAINFPDDS 74

Query: 66  RSSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTLFCIAVGFVP 125
           RSS + ++    +K +            ++   K+  +++  IA+P+V+ +FCIAVGF P
Sbjct: 75  RSSMSEKEE---EKPVVS----------TVKFEKSVGNLVQCIARPIVFAVFCIAVGFFP 134

Query: 126 FRTVKAPAIAAQVVADRVLNKKTN----EEEVESNLRGHKYSDYTRQLLKAVSGVSRSIE 185
               + PAIAA V +D +  KK +    EE  E   + HKYSD TR LL+ VSG+ RSIE
Sbjct: 135 TGRFQVPAIAAPVASDVMWKKKESGKVLEETKELKSKDHKYSDCTRSLLEVVSGLLRSIE 194

Query: 186 EARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLGEIVDEVV 245
           E R G   +++VE  L+ VKLKK +LQE I+NELY +LR+LKREK GL  R  EIVD VV
Sbjct: 195 EVRSGKADMKKVEAVLREVKLKKEELQEEIMNELYAELRELKREKDGLSDRSEEIVDMVV 254

Query: 246 KAKWAYDSLVENGSRGG-EARERMAGLEQIVRKLEVEYNERWESVGEIGDKILRRETEAL 305
           KAK  +D L+   S  G + +E++A LE+ + +L+ EY + WE +GEI D+ILRR+T A+
Sbjct: 255 KAKREHDRLLGKASGDGKKIKEQIARLEESMSRLDEEYAKIWERIGEIEDRILRRDTMAM 314

Query: 306 SFGVRELCFIERECDQLVKRFTREMK 327
           S G+REL FI RE +QLV  F REMK
Sbjct: 315 SIGIRELSFITRESEQLVASFRREMK 326

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BLAST of MELO3C010145T3 vs. TrEMBL
Match: B9I5Q6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04620g PE=4 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 4.4e-52
Identity = 134/327 (40.98%), Postives = 194/327 (59.33%), Query Frame = 1


Query: 7   SLPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLLGFPTGSR 66
           S  SP+ SH   L     +P + R      + N     K L FV   + L + GF   S+
Sbjct: 3   SFISPSLSHLFPLHKDPPSPIKYRIRTTKLQRN---RHKALPFV---HSLCVFGFQGASK 62

Query: 67  SSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTLFCIAVGFVPF 126
            SK+ Q   +      +      F +  +  +K ++ +   I +P+V TLFCIA+GF P 
Sbjct: 63  CSKSSQDLPLDSPRRLKQEKELVFSNGFL--SKPEKGVFQCITRPIVLTLFCIAIGFYPL 122

Query: 127 RTVKAPAIAAQVVADRV-LNKKTNEEEVESNLRGHKYSDYTRQLLKAVSGVSRSIEEARK 186
             +   A+A   VA  V + KK  +   ESNL+ H++S+YT+ LL+ VS + + IEE RK
Sbjct: 123 GALPPLAVADVAVASEVAVKKKEKKLNKESNLKEHEFSNYTKSLLEEVSRLLKRIEEVRK 182

Query: 187 GNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLGEIVDEVVKAKW 246
           GN S+EEV++ LKAVK +K +LQ  I+  +Y ++R L++EK  +E R  EIV+EV K K 
Sbjct: 183 GNGSVEEVKLVLKAVKGRKEELQREIMEGMYLEVRQLRKEKGKMENRSEEIVEEVEKEKK 242

Query: 247 AYDSLVENGSRGGEARERMAGLEQIVRKLEVEYNERWESVGEIGDKILRRETEALSFGVR 306
            +D+L E G      +ERM  LE+ +R ++ EY   WE +GEIG +ILRRET ALS GVR
Sbjct: 243 EFDNLREEGD-----KERMEALEERMRVMDEEYTSVWERIGEIGGEILRRETMALSVGVR 302

Query: 307 ELCFIERECDQLVKRFTREMKARGKDT 333
           ELCFIEREC++LVKRF++EM+ +  D+
Sbjct: 303 ELCFIERECEELVKRFSQEMRQKSTDS 316

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BLAST of MELO3C010145T3 vs. TAIR10
Match: AT3G04340.1 (AT3G04340.1 FtsH extracellular protease family)

HSP 1 Score: 195.7 bits (496), Expect = 4.8e-50
Identity = 137/337 (40.65%), Postives = 188/337 (55.79%), Query Frame = 1


Query: 1   MDLISVS-LPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLL 60
           MD IS S L SP    S  LSP + +        R R  N  F S+  N  S    + + 
Sbjct: 1   MDFISASSLSSP---FSTQLSPIYLSSGIVSLKPRHRVKNRNFGSRESNNKSRKI-VPIR 60

Query: 61  GFPTGSRSSKALQQRGVADKSIFEDFSV---SNFVSLSIHDN--KNDESMLNFIAKPVVY 120
           G    S S    +Q     +++ E   +    N + LS   N  K  ES++ F+ KP+VY
Sbjct: 61  GCFGFSGSFLRSKQSDYGSEAVSESLRLCGEGNELVLSSEYNSAKTRESVIQFVTKPLVY 120

Query: 121 TLFCIAVGFVPFRTVKAPAIAAQVVADRVLNKK---TNEEEVESNLRGHKYSDYTRQLLK 180
            LFCIA+G  P R+ +APA+A   V+D +  KK     E+EV      H++SDYTR+LL+
Sbjct: 121 ALFCIAIGLSPIRSFQAPALAVPFVSDVIWKKKKERVREKEVVLKAVDHEFSDYTRRLLE 180

Query: 181 AVSGVSRSIEEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEM 240
            VS + ++IE  RK N  + EV  AL AVK++K KLQ+ I++ LYR +R L++E+  L  
Sbjct: 181 TVSVLLKTIEIVRKENGEVAEVGAALDAVKVEKEKLQKEIMSGLYRDMRRLRKERDLLMK 240

Query: 241 RLGEIVDEVVKAKWAYDSLVENGSRGGEARERMAGLEQIVRKLEVEYNERWESVGEIGDK 300
           R  +IVDE +  K   + L+  G     ARE+M  LE+ V  +E EYN+ WE + EI D 
Sbjct: 241 RADKIVDEALSLKKQSEKLLRKG-----AREKMEKLEESVDIMESEYNKIWERIDEIDDI 300

Query: 301 ILRRETEALSFGVRELCFIERECDQLVKRFTREMKAR 329
           IL++ET  LSFGVREL FIEREC +LVK F RE+  +
Sbjct: 301 ILKKETTTLSFGVRELIFIERECVELVKSFNRELNQK 328

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BLAST of MELO3C010145T3 vs. NCBI nr
Match: gi|659086122|ref|XP_008443775.1| (PREDICTED: uncharacterized protein LOC103487285 [Cucumis melo])

HSP 1 Score: 656.4 bits (1692), Expect = 2.8e-185
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1


Query: 1   MDLISVSLPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLLG 60
           MDLISVSLPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLLG
Sbjct: 1   MDLISVSLPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLLG 60

Query: 61  FPTGSRSSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTLFCIA 120
           FPTGSRSSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTLFCIA
Sbjct: 61  FPTGSRSSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTLFCIA 120

Query: 121 VGFVPFRTVKAPAIAAQVVADRVLNKKTNEEEVESNLRGHKYSDYTRQLLKAVSGVSRSI 180
           VGFVPFRTVKAPAIAAQVVADRVLNKKTNEEEVESNLRGHKYSDYTRQLLKAVSGVSRSI
Sbjct: 121 VGFVPFRTVKAPAIAAQVVADRVLNKKTNEEEVESNLRGHKYSDYTRQLLKAVSGVSRSI 180

Query: 181 EEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLGEIVDEV 240
           EEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLGEIVDEV
Sbjct: 181 EEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLGEIVDEV 240

Query: 241 VKAKWAYDSLVENGSRGGEARERMAGLEQIVRKLEVEYNERWESVGEIGDKILRRETEAL 300
           VKAKWAYDSLVENGSRGGEARERMAGLEQIVRKLEVEYNERWESVGEIGDKILRRETEAL
Sbjct: 241 VKAKWAYDSLVENGSRGGEARERMAGLEQIVRKLEVEYNERWESVGEIGDKILRRETEAL 300

Query: 301 SFGVRELCFIERECDQLVKRFTREMKARGKDTNG 335
           SFGVRELCFIERECDQLVKRFTREMKARGKDTNG
Sbjct: 301 SFGVRELCFIERECDQLVKRFTREMKARGKDTNG 334

[Close]

BLAST of MELO3C010145T3 vs. NCBI nr
Match: gi|449449669|ref|XP_004142587.1| (PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus])

HSP 1 Score: 520.8 bits (1340), Expect = 1.8e-144
Identity = 278/339 (82.01%), Postives = 293/339 (86.43%), Query Frame = 1


Query: 1   MDLISVSLPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLLG 60
           MDLI  SLP PNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFT K LN VSNG RLQ LG
Sbjct: 1   MDLICASLPLPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTRKCLNLVSNGSRLQFLG 60

Query: 61  FPTGSRSSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTLFCIA 120
           FPTG RSSKALQQRGV DKSI EDFSVSNFVSLSIHDNK DESMLN IAKPVVYTLFCIA
Sbjct: 61  FPTGPRSSKALQQRGVVDKSISEDFSVSNFVSLSIHDNKIDESMLNCIAKPVVYTLFCIA 120

Query: 121 VGFVPFRTVKAPAIAAQVVADRVLNKKTNEEEVESNLRGHKYSDYTRQLLKAVSGVSRSI 180
           VGFVPFRTVKAPAIAAQVVADRV +KK   EEVESNLRGH+YS++TRQLL+AVS VS SI
Sbjct: 121 VGFVPFRTVKAPAIAAQVVADRVFDKKA-YEEVESNLRGHEYSEFTRQLLEAVSYVSMSI 180

Query: 181 EEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLGEIVDEV 240
           EEARKGNCS+E+VEMALK VKL KVKLQEGILN L+ QLRDLKREK GLE RL  +V+EV
Sbjct: 181 EEARKGNCSVEQVEMALKTVKLYKVKLQEGILNYLHTQLRDLKREKVGLERRLEGVVNEV 240

Query: 241 VKAKWAYDSLVEN-GSRGGEA-----RERMAGLEQIVRKLEVEYNERWESVGEIGDKILR 300
           V+AKW Y+ LVE  GS   E+     RERMA LEQI+R LEVEYNE WE VGEIGD I R
Sbjct: 241 VEAKWEYERLVEKMGSSRKESKERMDRERMARLEQIMRMLEVEYNEIWERVGEIGDIIFR 300

Query: 301 RETEALSFGVRELCFIERECDQLVKRFTREMKARGKDTN 334
           RET ALSFGVRELCFIERECDQLVKRFTREM+ARGKDTN
Sbjct: 301 RETVALSFGVRELCFIERECDQLVKRFTREMRARGKDTN 338

[Close]

BLAST of MELO3C010145T3 vs. NCBI nr
Match: gi|700211653|gb|KGN66749.1| (hypothetical protein Csa_1G674540 [Cucumis sativus])

HSP 1 Score: 520.8 bits (1340), Expect = 1.8e-144
Identity = 278/339 (82.01%), Postives = 293/339 (86.43%), Query Frame = 1


Query: 1   MDLISVSLPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLLG 60
           MDLI  SLP PNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFT K LN VSNG RLQ LG
Sbjct: 1   MDLICASLPLPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTRKCLNLVSNGSRLQFLG 60

Query: 61  FPTGSRSSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTLFCIA 120
           FPTG RSSKALQQRGV DKSI EDFSVSNFVSLSIHDNK DESMLN IAKPVVYTLFCIA
Sbjct: 61  FPTGPRSSKALQQRGVVDKSISEDFSVSNFVSLSIHDNKIDESMLNCIAKPVVYTLFCIA 120

Query: 121 VGFVPFRTVKAPAIAAQVVADRVLNKKTNEEEVESNLRGHKYSDYTRQLLKAVSGVSRSI 180
           VGFVPFRTVKAPAIAAQVVADRV +KK   EEVESNLRGH+YS++TRQLL+AVS VS SI
Sbjct: 121 VGFVPFRTVKAPAIAAQVVADRVFDKKA-YEEVESNLRGHEYSEFTRQLLEAVSYVSMSI 180

Query: 181 EEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLGEIVDEV 240
           EEARKGNCS+E+VEMALK VKL KVKLQEGILN L+ QLRDLKREK GLE RL  +V+EV
Sbjct: 181 EEARKGNCSVEQVEMALKTVKLYKVKLQEGILNYLHTQLRDLKREKVGLERRLEGVVNEV 240

Query: 241 VKAKWAYDSLVEN-GSRGGEA-----RERMAGLEQIVRKLEVEYNERWESVGEIGDKILR 300
           V+AKW Y+ LVE  GS   E+     RERMA LEQI+R LEVEYNE WE VGEIGD I R
Sbjct: 241 VEAKWEYERLVEKMGSSRKESKERMDRERMARLEQIMRMLEVEYNEIWERVGEIGDIIFR 300

Query: 301 RETEALSFGVRELCFIERECDQLVKRFTREMKARGKDTN 334
           RET ALSFGVRELCFIERECDQLVKRFTREM+ARGKDTN
Sbjct: 301 RETVALSFGVRELCFIERECDQLVKRFTREMRARGKDTN 338

[Close]

BLAST of MELO3C010145T3 vs. NCBI nr
Match: gi|1009117928|ref|XP_015875583.1| (PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 226.1 bits (575), Expect = 9.4e-56
Identity = 144/336 (42.86%), Postives = 204/336 (60.71%), Query Frame = 1


Query: 1   MDLISVS--LPSPNKSHSQFLSPYFSTP-FRTRYPIRPRRCNF-IFTSKRLNFVSNGYRL 60
           MD I+ S  LPSP        +P+FS P  R  Y     R    IF SK   F    + +
Sbjct: 1   MDAIAASRLLPSP-------FAPHFSPPTLRNSYLASNHRIRIQIFASKSPKFHRIFFPV 60

Query: 61  QLLGFPTGSRSSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTL 120
           +  GF  G+ SS    +     + + ED    N V    + ++ + ++L FIAK  + TL
Sbjct: 61  RY-GF--GAFSSLEAHRNSRRYEQVVEDDEQVNTVG---NCSEPEGNLLRFIAKQALLTL 120

Query: 121 FCIAVGFVPFRTVKAPAIAAQVVADRVLNKKTNEEEVESNLRGHKYSDYTRQLLKAVSGV 180
           F +A+GF P R V+  A+AA V  + VLNKK N +  E N + H+YS+ TR+LL+ VS +
Sbjct: 121 FFLAIGFAPLRAVRVSALAAPVATEEVLNKKQNGKGKEMNSKSHEYSECTRRLLETVSAL 180

Query: 181 SRSIEEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLGEI 240
           +R +EE RKGN  L++VEM LKAVK +K +LQ  I++ LY +L++LKRE+  L  R   I
Sbjct: 181 TRRVEEVRKGNADLKQVEMELKAVKGQKEELQAEIMDSLYSELKELKRERGLLVKRSEGI 240

Query: 241 VDEVVKAKWAYDSLVENGSRGGEARERMAGLEQIVRKLEVEYNERWESVGEIGDKILRRE 300
           VD VVK K  YD ++ +     E  +++  LE+ +++LE +YN  WE VGEI D+ILRRE
Sbjct: 241 VDRVVKTKKEYDKVLGDAGE-KEDMDKVQMLEERLKELEEDYNSIWERVGEIEDQILRRE 300

Query: 301 TEALSFGVRELCFIERECDQLVKRFTREMKARGKDT 333
           T ALSFGVREL FIEREC+QLV+ F+R+ + +G D+
Sbjct: 301 TMALSFGVRELRFIERECEQLVENFSRQWRRKGLDS 322

[Close]

BLAST of MELO3C010145T3 vs. NCBI nr
Match: gi|223538806|gb|EEF40406.1| (metalloprotease m41 ftsh, putative [Ricinus communis])

HSP 1 Score: 218.8 bits (556), Expect = 1.5e-53
Identity = 133/334 (39.82%), Postives = 198/334 (59.28%), Query Frame = 1


Query: 3   LISVSLPSPNKSHSQFLSPYFSTPFRTRYPIRPRRCNFIFTSKRLNFVSNGYRLQLLGFP 62
           + S+S+PS     S F  P+   P +T +  +  +  +  +++ L F+   ++  +  FP
Sbjct: 1   MASLSIPS----FSHFSPPFKIPPSQTTHKFKITKI-YSHSNRALPFL---HKFHVFSFP 60

Query: 63  TGSRSSKALQQRGVADKSIFEDFSVSNFVSLSIHDNKNDESMLNFIAKPVVYTLFCIAVG 122
             S+  K  Q+  +  K +   FS            +++ES++  I +P+VY LFCIA+G
Sbjct: 61  EASKCHKTKQEPSLHQKKL--SFSTGYLT-------RHEESVIQCITRPIVYALFCIAIG 120

Query: 123 FVPFRTVKAPAIAAQVVADRVLNKKTNEEEVESN----LRGHKYSDYTRQLLKAVSGVSR 182
           F    +  A A  A+ VA  V+  K  E+E + N     +GH+YSDY+R LL  VS + +
Sbjct: 121 FCSVGSFPAYAAVAEQVASEVIELKKKEKEKKLNEEKYSKGHEYSDYSRNLLAEVSVLLK 180

Query: 183 SIEEARKGNCSLEEVEMALKAVKLKKVKLQEGILNELYRQLRDLKREKAGLEMRLGEIVD 242
            IEE R+ N   EEV++ALKAVK KK  LQ  IL  LY ++R+LK+EK  LE R  +I+D
Sbjct: 181 CIEETRRRNGDSEEVDLALKAVKAKKEGLQGQILEGLYSEVRELKKEKESLEKRADKILD 240

Query: 243 EVVKAKWAYDSLVENGSRGGEARERMAGLEQIVRKLEVEYNERWESVGEIGDKILRRETE 302
           E +KA+  Y++L  N  +G     RM  LE+ +  +E EY+  WE VGEI D ILRRET 
Sbjct: 241 EGLKARREYETLGINAEKG-----RMEELEERMGVIEEEYSGVWEKVGEIEDAILRRETM 300

Query: 303 ALSFGVRELCFIERECDQLVKRFTREMKARGKDT 333
           A+S G+RELCFIEREC++LVKRF +EM+ + K++
Sbjct: 301 AMSVGIRELCFIERECEELVKRFNQEMRRKSKES 312

The following BLAST results are available for this feature:

BLAST of MELO3C010145T3 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FTSI5_ARATH	8.5e-49	40.65	Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=A...	[more]

BLAST of MELO3C010145T3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0C3_CUCSA	1.3e-144	82.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G674540 PE=4 SV=1	[more]
B9S7N3_RICCO	1.0e-53	39.82	Metalloprotease m41 ftsh, putative OS=Ricinus communis GN=RCOM_0610060 PE=4 SV=1	[more]
W9RHH7_9ROSA	1.8e-53	42.60	ATP-dependent zinc metalloprotease FtsH OS=Morus notabilis GN=L484_024479 PE=4 S...	[more]
D7TUI7_VITVI	2.3e-53	41.72	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g02190 PE=4 SV=...	[more]
B9I5Q6_POPTR	4.4e-52	40.98	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04620g PE=4 SV=2	[more]

BLAST of MELO3C010145T3 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04340.1	4.8e-50	40.65	FtsH extracellular protease family	[more]

BLAST of MELO3C010145T3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086122\|ref\|XP_008443775.1\|	2.8e-185	100.00	PREDICTED: uncharacterized protein LOC103487285 [Cucumis melo]	[more]
gi\|449449669\|ref\|XP_004142587.1\|	1.8e-144	82.01	PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus]	[more]
gi\|700211653\|gb\|KGN66749.1\|	1.8e-144	82.01	hypothetical protein Csa_1G674540 [Cucumis sativus]	[more]
gi\|1009117928\|ref\|XP_015875583.1\|	9.4e-56	42.86	PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chlorop...	[more]
gi\|223538806\|gb\|EEF40406.1\|	1.5e-53	39.82	metalloprotease m41 ftsh, putative [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0042981	regulation of apoptotic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0008568	microtubule-severing ATPase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008233	peptidase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C010145	MELO3C010145	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C010145T3.cds1	MELO3C010145T3.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C010145T3	MELO3C010145T3-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 205..239 scor