MELO3C008928T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C008928T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionEukaryotic translation initiation factor 3 subunit G
Locationchr8 : 21895416 .. 21895904 (+)
Sequence length489
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCTTCTTCGCCTAAGACTACTCCTCATGCTCGTAGCCGACATTGCAAGAGCATTTTGTTGTGCTGTCCGTTCAAACGAGTTTATCGTCTTGACGACATTAAGGACTCCACTTCTACTAACCCTACTCAAAGTCCACATGCAGGGATGGCTTCAAGGCATGCAACTCTAGCCACTATCAATATAGAGGTGCCCACTGTTTCTCTTCCCAGGTTTTCTCAGCCGTCTGTATCTTCATTTGTTCCCGACTCTATGATTTCTATTGAAACTGTGATTCTTGATTCAGAATTAGATTCTTTTGATGGGGATGACTCTGTTGTTCTCTCTAAATTACTTAATTGGTTCAAGCGTGTTGATCCGTCAGGACATTCTTTTATTCCGTCATCCTCTACCAAGGGTATGCCACCTCCGGCTTCTATATCTATCAATCCCATTATCCAAACAACTGTTGCATCTCCTAGGGTTGCTCCGAGTGTTACAAAGTAA

mRNA sequence

ATGGATTCTTCTTCGCCTAAGACTACTCCTCATGCTCGTAGCCGACATTGCAAGAGCATTTTGTTGTGCTGTCCGTTCAAACGAGTTTATCGTCTTGACGACATTAAGGACTCCACTTCTACTAACCCTACTCAAAGTCCACATGCAGGGATGGCTTCAAGGCATGCAACTCTAGCCACTATCAATATAGAGGTGCCCACTGTTTCTCTTCCCAGGTTTTCTCAGCCGTCTGTATCTTCATTTGTTCCCGACTCTATGATTTCTATTGAAACTGTGATTCTTGATTCAGAATTAGATTCTTTTGATGGGGATGACTCTGTTGTTCTCTCTAAATTACTTAATTGGTTCAAGCGTGTTGATCCGTCAGGACATTCTTTTATTCCGTCATCCTCTACCAAGGGTATGCCACCTCCGGCTTCTATATCTATCAATCCCATTATCCAAACAACTGTTGCATCTCCTAGGGTTGCTCCGAGTGTTACAAAGTAA

Coding sequence (CDS)

ATGGATTCTTCTTCGCCTAAGACTACTCCTCATGCTCGTAGCCGACATTGCAAGAGCATTTTGTTGTGCTGTCCGTTCAAACGAGTTTATCGTCTTGACGACATTAAGGACTCCACTTCTACTAACCCTACTCAAAGTCCACATGCAGGGATGGCTTCAAGGCATGCAACTCTAGCCACTATCAATATAGAGGTGCCCACTGTTTCTCTTCCCAGGTTTTCTCAGCCGTCTGTATCTTCATTTGTTCCCGACTCTATGATTTCTATTGAAACTGTGATTCTTGATTCAGAATTAGATTCTTTTGATGGGGATGACTCTGTTGTTCTCTCTAAATTACTTAATTGGTTCAAGCGTGTTGATCCGTCAGGACATTCTTTTATTCCGTCATCCTCTACCAAGGGTATGCCACCTCCGGCTTCTATATCTATCAATCCCATTATCCAAACAACTGTTGCATCTCCTAGGGTTGCTCCGAGTGTTACAAAGTAA

Protein sequence

MDSSSPKTTPHARSRHCKSILLCCPFKRVYRLDDIKDSTSTNPTQSPHAGMASRHATLATINIEVPTVSLPRFSQPSVSSFVPDSMISIETVILDSELDSFDGDDSVVLSKLLNWFKRVDPSGHSFIPSSSTKGMPPPASISINPIIQTTVASPRVAPSVTK*
Homology
[Close]
BLAST of MELO3C008928T1 vs. NCBI nr
Match: gi|659109755|ref|XP_008454860.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 6.9e-17
Identity = 64/155 (41.29%), Postives = 86/155 (55.48%), Query Frame = 1 

Query: 1   MDSSSPKTTPH-----ARSRHCKSILLCCPFKRVYRLDDIKDS----TSTNPTQSPHAGM 60
           +DSSS   +P       + +H KSI L  PFK+V   D   DS    +S +  QS HA  
Sbjct: 24  IDSSSMAPSPRKNASPVKGKHYKSISLRHPFKKVRCSDATDDSNLHISSASSVQSAHAST 83

Query: 61  ASRHATLATINIEVPTVSLPRFSQPSVSSFVPDSMISIETVILDSELDSFDGDDSVVLSK 120
           +S HA    + I+VP  S PRF+QPS SS +  S +SIETVILD +  S + D+S+VLSK
Sbjct: 84  SSSHAPSVIVKIKVPDGSPPRFTQPSASSSISRSRVSIETVILDLDSASSNSDESIVLSK 143

Query: 121 LLNWFKRVDPSGHSFIPSSSTKG-MPPPASISINP 146
           LL   K +D SG     + + +G   PP  +S  P
Sbjct: 144 LLRRLKTMDRSGPLSTLAPTAQGTRSPPCDVSPPP 178

[Close]
BLAST of MELO3C008928T1 vs. NCBI nr
Match: gi|659082052|ref|XP_008441642.1| (PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 4.4e-11
Identity = 51/135 (37.78%), Postives = 70/135 (51.85%), Query Frame = 1 

Query: 1   MDSSSPKTTPHARSRHCKSILLCCPFKRVYR----LDDIKDSTSTNPTQSPHAGMASRHA 60
           M  S PKT   ++ +  K I    P+K+++R     ++ +      P    HAG +S   
Sbjct: 162 MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPG 221

Query: 61  TLATINIEVPTVSLPRFSQPSVSSFVPDSMISIETVILDSELDSFDGDDSVVLSKLLNWF 120
           +L T+  EVP  S PR S  S SS VP+  +SIETV+LDS  DS D  D+VVLS LL+  
Sbjct: 222 SLITVKKEVPEFSPPRTSHLSTSSSVPEPRVSIETVVLDS--DSSDSKDNVVLSTLLHRK 281

Query: 121 KRVDPSGHSFIPSSS 132
               PS     P +S
Sbjct: 282 SSAAPSSPHAFPQAS 294

[Close]
BLAST of MELO3C008928T1 vs. NCBI nr
Match: gi|659118726|ref|XP_008459271.1| (PREDICTED: uncharacterized protein LOC103498446 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 1 

Query: 1   MDSSSPKTTPHARSRHCKSILLCCPFKRVYR-LDDIKDSTSTNPTQSPHAGMASRHATLA 60
           MD ++PK    ++ +  K I    P+K+V + +   + ST ++P  S +A  ++   +  
Sbjct: 28  MDPTAPKLITSSKGKRYKGIPTKHPYKKVRKSILSGEYSTVSSPAHSSYAERSANPPSPV 87

Query: 61  TINIEVPTVSLPRFSQPSVSSFVPDSM------ISIETVILDSELDSFDGDDSVVLSKLL 115
           T+  EV   S P+   PSVSS VP S+      +S+ETV+LDS  DS D DD+V+LS LL
Sbjct: 88  TVKEEVLEFSSPQSVHPSVSSSVPKSLSRPEPRVSVETVVLDS--DSSDSDDNVILSTLL 146

The following BLAST results are available for this feature:
BLAST of MELO3C008928T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109755|ref|XP_008454860.1|6.9e-1741.29PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|659082052|ref|XP_008441642.1|4.4e-1137.78PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo][more]
gi|659118726|ref|XP_008459271.1|2.2e-0736.36PREDICTED: uncharacterized protein LOC103498446 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C008928MELO3C008928gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C008928T1MELO3C008928T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C008928T1.cds1MELO3C008928T1.cds1CDS