MELO3C008880T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008880T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Exosome complex component RRP4
Location	chr8 : 23101791 .. 23104776 (-)
Sequence length	1300

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTTTACAACTTTCCTTGAATCATACCCAGAAGATTCGTCTTGAAAGAGCCCAAGAAAGGCTTAAATCTCTCTCTTCGAAGGGCAATTCTGATGCTTCTGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGTACATCACTCCTCACTACTCTTTTTATAATAGATGCTTGGATTGTGTACTTGCCAGGAGATTATATGCATTGCGCTATAATTGAAAATTGTATACAGGGGACATGGAACTCTTGACTTGAATGGAGAAGTAGTTGCCTCTATTTGTGGAGTGGTTGAACGAGTCAATAAGCTTATCTATGTACGTGCCTTGCGTGCCAGGTTGTCCATGAACTTTGTAATTTGGTTTTTCGTAGCCTCGTTTTTTGGTCTATTGTTATGATATCTTTTATGATCTAATTGTCTGTACTGGTTATTAGATATAAACCGGAGGTTGGTGATATCGTAGTGGGACGTGTTACAGAGGTAAAACCAAACATTTACTATTTATCTTTTTGGTTTTACATAAAGGTAACATAGAGATATTGGTGAGTAAAACAGACAAGAAAAACTTATTCTGGTGTCTTGATTACTACGCTTTAGATAGGAAAAATGTGTTACAATGCCCCTCCACCACTCCATTTTTTTCATACCATCTGATGTGATCTTATTCAGGTTGCTCCAAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCCATGAACTTGCCCGATGGTATTCAGGTATTGGAGTATTCCCTTTTGTTATGGAAATAATGGTGCTTACTGCTGCACCAGACTGTGAATTAGCTATGCTTTCTGAAAAAAATTTGCTGCAACTGATTCTCTCTCTGTCTAAGAATGGTTGTGTTTGTTGTAACCCCGGGTTAATTGTATTATTTTATTTCTAGAGGAGGCGAACTGCTGTCGATGAACTGAACATGCGGAGCATTTTTGAAGAAAATGACGTCATTTGTGTAAGTTTGATAGCCTTTACTTTCACCAATCAGGTATCTTCTACCAAGTTTGTCCCGTGTTATTCGCATAAGGTTTTCTTCTAGATTTTTACATTTTTTAACTTTTTTTGGGGGGCCGGGGGGGGGGGGGGGGGGGGTTGGTGGTGTTAATTCTTAGCTAGCCGAGTATATGGTAGGTTTAAAATATTTGTGGCTGGCCATCAATATATAAACATTACTGTGTTCATGCTCAATTTTCCATTTAAGGAACAATGACCATACCACATCCTTTCTCAGGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGGTAAAAAGGAGTCTTTCTTAAGCTCCTGGATGTTGGCGTAAACAAAATACGTTTAAAATCAAATTTTGTACGTATCCCGTCTCTTCATTGGTTTCTTAGGAGAGACCCCACAGAAAGATTCTTGGTATCATGCGAATACTGATTTATAGTCGAATAGACAAATCTTCTGAGGAATTCTAGCCGTTAAAATGGATTATGGAGATGATTATAAAGTTGGTGCACAGGAATGAGGGAGGAAGCCATGAAGGGATGCCATAAAAGTGAAAAGAGGGATAGGAGGAGATAGCGGATGGGTGGGCAGAAAAAAAATACGAAAGATGGTCGCAGAAAAGTGATTTTAGAGAAGGAAAAAAGGAAAAAAAATCTTTTCTAACACGTGAATGGTTATACCAAATAGAGCGATAGAAGTTATGTCTAATTGTTACAACCCTGTTGTTTTTTAATTCTTTTTTGAAAAGCAAGCCTATCTCTATCCAATCTTTTACGATACATTTCATCGATCTTAGTAAAAAGAGTTCAATTCTAAGTCAAATTTAAAAAACAAAGACAAGTTTTTAAAAACTATTTTTTCTAGTTTTCAAAACATATACTTGATTTTCTATAACATTAGTGGGAAGTATATACTAAAGTTAGAAATTTAAAGATGGAATCTGTGTTTATAGGATTTCAAAAATTAAAACTTTTAAAAAACAAATGATTACCAATCTATTATAAGTTCAAAATCTTGAAGGATAGCTATATTTGAATATGATATCTTTCGATGCAATTGTTATTAAATTCCTAAAAACTTTTATGGCATCTTCTCATATTGTTTCTTCATGACTGTTGTGATTAAGATATGTGCATATGTATATCCAGCTTGAACGTGGTCAGCTGCTCATAGTTTCACCATATCTAATAAAGAGACGCAAACAACACTTCCATCATTTGGATCAATATGGTATTGACCTAATACTTGGATGCAATGGTTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGAGGATGCGATGATAGAGGATCACGTTGATAAACCTGAACAAAAGGCTTTGAAATTTGAAGGAACTGTGCAAGAAGTATATACTCCATTAGAGACACGACAGAATATCTGCAGAACTGCAAACGCTATTCGAGTATTGTCTACCTTAGGTTTCATAATGACAGTAGAAGTCATCATGGAGATAGTTAATCTAAGTATTTCTCTAAACATTGATGTGCACGAAATGCTTGGCTCAGAGTTCTGTGTTCTCACAGCAGAAAAAGAGGTTGAACGACGTTCTTCGAGTAAGAAAAGGGGGTAATTTTGTCTTCTTTCAAGAATTGTGAGTAATTTGAATTACCAAAACCGTTTGATTTGCAGAGAAATTTAGTGTTATTATATTATGTTGGATTTTAGTTTACCACCACTTTGTATCTGTTAGTATCAGTATAGAATACAATGTCCTCAATTATTATGCAGTACGTGGTTTCATAAATGTCCAAGGATTACTTAGGATTTTACCATATGTCATATCTTTGGCTAGATTAATACTAGACGAAACTTAATTTTATTAAATGTACTATTACTGCTGATAATGGTATCTTATGATCATGAGGTGGCAAAAAGAAAACCATCAGAAGATTGTTTGGTGG

mRNA sequence

ATGAGAGGTTTACAACTTTCCTTGAATCATACCCAGAAGATTCGTCTTGAAAGAGCCCAAGAAAGGCTTAAATCTCTCTCTTCGAAGGGCAATTCTGATGCTTCTGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGAACTCTTGACTTGAATGGAGAAGTAGTTGCCTCTATTTGTGGAGTGGTTGAACGAGTCAATAAGCTTATCTATGTACGTGCCTTGCGTGCCAGATATAAACCGGAGGTTGGTGATATCGTAGTGGGACGTGTTACAGAGGTTGCTCCAAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCCATGAACTTGCCCGATGGTATTCAGAGGAGGCGAACTGCTGTCGATGAACTGAACATGCGGAGCATTTTTGAAGAAAATGACGTCATTTGTGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGCTGCTCATAGTTTCACCATATCTAATAAAGAGACGCAAACAACACTTCCATCATTTGGATCAATATGGTATTGACCTAATACTTGGATGCAATGGTTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGAGGATGCGATGATAGAGGATCACGTTGATAAACCTGAACAAAAGGCTTTGAAATTTGAAGGAACTGTGCAAGAAGTATATACTCCATTAGAGACACGACAGAATATCTGCAGAACTGCAAACGCTATTCGAGTATTGTCTACCTTAGGTTTCATAATGACAGTAGAAGTCATCATGGAGATAGTTAATCTAAGTATTTCTCTAAACATTGATGTGCACGAAATGCTTGGCTCAGAGTTCTGTGTTCTCACAGCAGAAAAAGAGGTTGAACGACGTTCTTCGAGTAAGAAAAGGGGGTAATTTTGTCTTCTTTCAAGAATTGTGAGTAATTTGAATTACCAAAACCGTTTGATTTGCAGAGAAATTTAGTGTTATTATATTATGTTGGATTTTAGTTTACCACCACTTTGTATCTGTTAGTATCAGTATAGAATACAATGTCCTCAATTATTATGCAGTACGTGGTTTCATAAATGTCCAAGGATTACTTAGGATTTTACCATATGTCATATCTTTGGCTAGATTAATACTAGACGAAACTTAATTTTATTAAATGTACTATTACTGCTGATAATGGTATCTTATGATCATGAGGTGGCAAAAAGAAAACCATCAGAAGATTGTTTGGTGG

Coding sequence (CDS)

ATGAGAGGTTTACAACTTTCCTTGAATCATACCCAGAAGATTCGTCTTGAAAGAGCCCAAGAAAGGCTTAAATCTCTCTCTTCGAAGGGCAATTCTGATGCTTCTGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGAACTCTTGACTTGAATGGAGAAGTAGTTGCCTCTATTTGTGGAGTGGTTGAACGAGTCAATAAGCTTATCTATGTACGTGCCTTGCGTGCCAGATATAAACCGGAGGTTGGTGATATCGTAGTGGGACGTGTTACAGAGGTTGCTCCAAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCCATGAACTTGCCCGATGGTATTCAGAGGAGGCGAACTGCTGTCGATGAACTGAACATGCGGAGCATTTTTGAAGAAAATGACGTCATTTGTGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGCTGCTCATAGTTTCACCATATCTAATAAAGAGACGCAAACAACACTTCCATCATTTGGATCAATATGGTATTGACCTAATACTTGGATGCAATGGTTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGAGGATGCGATGATAGAGGATCACGTTGATAAACCTGAACAAAAGGCTTTGAAATTTGAAGGAACTGTGCAAGAAGTATATACTCCATTAGAGACACGACAGAATATCTGCAGAACTGCAAACGCTATTCGAGTATTGTCTACCTTAGGTTTCATAATGACAGTAGAAGTCATCATGGAGATAGTTAATCTAAGTATTTCTCTAAACATTGATGTGCACGAAATGCTTGGCTCAGAGTTCTGTGTTCTCACAGCAGAAAAAGAGGTTGAACGACGTTCTTCGAGTAAGAAAAGGGGGTAA

Protein sequence

MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKALKFEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEMLGSEFCVLTAEKEVERRSSSKKRG*

Homology

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BLAST of MELO3C008880T1 vs. Swiss-Prot
Match: RRP4_ARATH (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.1e-119
Identity = 213/322 (66.15%), Postives = 261/322 (81.06%), Query Frame = 1


Query: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQL L+ TQK+R ERA ERL+SLSS  NSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GE++A++CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKA 240
           QLL V PYL+KR K HFH+++  GIDLI+GCNGFIW+GEHV+ ++   I+D   K E+  
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDD--QKDEEMI 242

Query: 241 LKFEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEML 300
                  ++ + PLETRQ ICR  NAIRVLS LGF +T+EVIME VNLS S NID+H+ML
Sbjct: 243 SSSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNIDIHDML 302

Query: 301 GSEFCVLTAEKEVERRSSSKKR 322
           GSEF V+ AE E ERR + +K+
Sbjct: 303 GSEFHVVVAENEAERRRTKRKK 322

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BLAST of MELO3C008880T1 vs. Swiss-Prot
Match: EXOS2_MOUSE (Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.2e-46
Identity = 111/218 (50.92%), Postives = 143/218 (65.60%), Query Frame = 1


Query: 13  KIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVE 72
           ++RL +A++ L     + +    VV  DTI    + G ++GHGT     +++AS+ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLIVSPYLIKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ VSP L+KR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLDQYGIDLILGCNGFIWI---GEHVDPKEDA 227
           +K HFH L   G  +ILG NGFIWI    EH D  EDA
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD--EDA 216

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BLAST of MELO3C008880T1 vs. Swiss-Prot
Match: EXOS2_BOVIN (Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.7e-46
Identity = 107/214 (50.00%), Postives = 140/214 (65.42%), Query Frame = 1


Query: 13  KIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVE 72
           ++RL  A++ L     + +    VV  DTI    + G ++GHGT     +++AS+ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLIVSPYLIKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ VSP L+KR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKED 226
           +K HFH L   G  +ILG NGFIW+    + KED
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

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BLAST of MELO3C008880T1 vs. Swiss-Prot
Match: EXOS2_HUMAN (Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 184.5 bits (467), Expect = 1.8e-45
Identity = 107/214 (50.00%), Postives = 138/214 (64.49%), Query Frame = 1


Query: 13  KIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVE 72
           ++RL  A++ L     +      VV  DTI    + G ++GHGT     +++AS+ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLIVSPYLIKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ VSP L+KR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKED 226
           +K HFH L   G  +ILG NGFIWI    + KE+
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKEE 214

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BLAST of MELO3C008880T1 vs. Swiss-Prot
Match: RRP4_SCHPO (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp4 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.6e-44
Identity = 102/252 (40.48%), Postives = 154/252 (61.11%), Query Frame = 1


Query: 51  LKGHGTLDLNGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLD 110
           ++GHGT   +G + AS+ G V+RVNKLI V+ LR++Y PE+GD+++G++ EV PKRW++D
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVD 130

Query: 111 INYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQAR 170
           I   Q+AVLMLSS+NLP GIQRR+   DEL MRS F+E D++ AEV+    DG + +  R
Sbjct: 131 IGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTR 190

Query: 171 SQKYGKLERGQLLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIE 230
           S KYGKL  G  L V P L+ R K H + L   G+D+IL  NG++W+ +H + +  ++  
Sbjct: 191 SLKYGKLRNGVFLKVPPALVVRSKSHAYAL-AGGVDIILSVNGYVWVSKHNENQHSSVSI 250

Query: 231 DHVDKPEQKAL-KFEGTVQEVYTPLE-TRQNICRTANAIRVL-----STLGFIMTVEVIM 290
             +++   +++   E    + YT L  +R +IC    A R L     S   F  +  V  
Sbjct: 251 TRLEEEASESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYESSLVFS 310

Query: 291 EIVNLSISLNID 295
            + +L++  N+D
Sbjct: 311 NLQDLTVPKNMD 321

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BLAST of MELO3C008880T1 vs. TrEMBL
Match: W9QKH6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025009 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 2.4e-140
Identity = 250/327 (76.45%), Postives = 291/327 (88.99%), Query Frame = 1


Query: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRG QLSLN TQK+RL+RA E+L+SLSSK NS+ASV VAD+IP+NYEDGVLKGHGT +LN
Sbjct: 5   MRGTQLSLNQTQKVRLQRALEQLESLSSKVNSNASVTVADSIPVNYEDGVLKGHGTSELN 64

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVA++CGVVERVNKL+YVRALRARYKPEVGDI+VGRV  VAPKRWR++INYSQDAVLM
Sbjct: 65  GEVVATVCGVVERVNKLVYVRALRARYKPEVGDIIVGRVVVVAPKRWRIEINYSQDAVLM 124

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKL+RGQ
Sbjct: 125 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLKRGQ 184

Query: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 240
           +L + PYL+KRRKQHFHHL+Q+GIDLILGCNGFIW+GEHV+  +D M+E+ V+K EQ+  
Sbjct: 185 MLTIPPYLVKRRKQHFHHLEQFGIDLILGCNGFIWVGEHVEATDD-MLEEQVNKTEQQIT 244

Query: 241 KFEGT------VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
           K +         ++   PLETRQ++CRTANA+RVLSTLGFI+T+EVI+E VNLS SLN+D
Sbjct: 245 KSDRNSASLEEQEQSSIPLETRQSLCRTANAVRVLSTLGFIVTIEVILETVNLSSSLNLD 304

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKR 322
           VHEMLGSEFCVL AEKE ERR+ +KK+
Sbjct: 305 VHEMLGSEFCVLVAEKEAERRTLNKKK 330

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BLAST of MELO3C008880T1 vs. TrEMBL
Match: A0A059AYJ7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01542 PE=4 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 1.7e-138
Identity = 244/329 (74.16%), Postives = 284/329 (86.32%), Query Frame = 1


Query: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGL+L L  TQK+RL+RA E+L++LS+K NS+ASV +ADTIP+NYEDG LKGHGT +LN
Sbjct: 1   MRGLKLPLTQTQKVRLQRALEKLEALSTKANSNASVAIADTIPVNYEDGFLKGHGTTELN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVA++CGVVERVNKL+YVR LRARYKPEVGDI+VGRV EVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATVCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSS+NLPDGIQRRRTA DELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKL+RGQ
Sbjct: 121 LSSINLPDGIQRRRTAEDELNMRAIFEENDVICAEVRGFQHDGLHLQARSQKYGKLQRGQ 180

Query: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 240
           LL +  YL+KRRKQH+H+LD+YGIDLILGCNGF+W+GEHV+ K D M+ D  DKP+ +  
Sbjct: 181 LLSIPSYLVKRRKQHWHYLDEYGIDLILGCNGFVWVGEHVETK-DEMLVDQADKPDSQTS 240

Query: 241 K-------FEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNI 300
           K        EG  ++ YTPLETRQNICR ANAIRVLS LGF++T+EV+ME+VNL +S N+
Sbjct: 241 KTNDHSTSLEGQ-EQTYTPLETRQNICRIANAIRVLSMLGFVVTIEVVMEVVNLGVSQNM 300

Query: 301 DVHEMLGSEFCVLTAEKEVERRSSSKKRG 323
           D HEMLGSEFCVL AE+E ERRS  K +G
Sbjct: 301 DTHEMLGSEFCVLVAEREAERRSQKKNKG 327

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BLAST of MELO3C008880T1 vs. TrEMBL
Match: F6HQ49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00700 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 3.0e-135
Identity = 246/331 (74.32%), Postives = 283/331 (85.50%), Query Frame = 1


Query: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRG QLSLN TQK+RL+RA E+L+SLSSK NS+ASV VADTIP+NYEDGVLKGHGTLDL+
Sbjct: 1   MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVA++CGVVERVNKL+Y+R LRARYKPE GDI+VGRVTE+APKRWRLDIN+SQDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEEND++CAEVRG QHDG LHLQARSQKYGKLERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERG 180

Query: 181 QLLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKA 240
           Q+L +SPYL+KRRKQH H+L+++G+DLILGCNGFIW+GEHV+ K   +IED  DK EQ  
Sbjct: 181 QVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEAK-GILIEDQTDKAEQLN 240

Query: 241 LKFEGTV-------QEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLN 300
            K   +        +  YT LETRQNICR ANA+RVL+ LGF +TVEVI E VNLS SLN
Sbjct: 241 TKSSSSTFMSLEEQERTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLN 300

Query: 301 IDVHEMLGSEFCVLTAEKEVERRSS-SKKRG 323
           +D+HEMLGSEF VL AE E  R+S  +KK+G
Sbjct: 301 LDIHEMLGSEFYVLVAEGEATRKSMFTKKKG 330

[Close]

BLAST of MELO3C008880T1 vs. TrEMBL
Match: A0A022S5G6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010258mg PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 1.9e-134
Identity = 242/322 (75.16%), Postives = 284/322 (88.20%), Query Frame = 1


Query: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQLSL+  QK+RLERA E+L+SLSSK NSDASV VAD I +N ED +LKGHGT++L+
Sbjct: 1   MRGLQLSLSKGQKLRLERALEKLESLSSKSNSDASVKVADDIAVNNEDAILKGHGTIELD 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G +VA++CGVVERVNKL+YVR+LRARYKPE+GDI++GRV EVAPKRWRL+IN+SQDAVLM
Sbjct: 61  GRLVATLCGVVERVNKLVYVRSLRARYKPEIGDIIIGRVIEVAPKRWRLEINFSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDG LHLQARSQKYGKL+RG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGCLHLQARSQKYGKLKRG 180

Query: 181 QLLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKA 240
           QLL + PYL+K+RKQHFHHLDQYGIDLILGCNGF+W+GEHV+ + D M+ED  +K EQ+ 
Sbjct: 181 QLLTIPPYLVKKRKQHFHHLDQYGIDLILGCNGFVWVGEHVEVR-DEMVEDLPNKSEQE- 240

Query: 241 LKFEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEML 300
                 V+E YTPL+TR+NICR ANA+RV+STLGF++TVEV+ EIV+LS SLN+D HEML
Sbjct: 241 ---NEEVEETYTPLDTRENICRAANAVRVMSTLGFMITVEVVTEIVSLSRSLNLDTHEML 300

Query: 301 GSEFCVLTAEKEVERRSSSKKR 322
           G+EF VL AEKE ERRS  K+R
Sbjct: 301 GAEFYVLVAEKEAERRSLLKRR 317

[Close]

BLAST of MELO3C008880T1 vs. TrEMBL
Match: A0A151TUE4_CAJCA (Exosome complex exonuclease RRP4 OS=Cajanus cajan GN=KK1_009893 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 1.6e-133
Identity = 238/328 (72.56%), Postives = 288/328 (87.80%), Query Frame = 1


Query: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           +RG+QL L+ TQK+RL++A E+L+SLS K N DASVVVAD+I +N+EDGVLKGHGT DLN
Sbjct: 5   VRGIQLPLSQTQKVRLQKALEQLQSLSLKVNFDASVVVADSISVNHEDGVLKGHGTADLN 64

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVA++CGVVERVNKL+YVRALR+RYKPEVGDIV+GRV EVA KRWRL+INYSQDAVLM
Sbjct: 65  GEVVATVCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVVEVAQKRWRLEINYSQDAVLM 124

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMN+PDG+QRRRTAVDELNMR IFEENDV+CAEVRG QHDGLHLQARS+KYGKL RGQ
Sbjct: 125 LSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLTRGQ 184

Query: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDK------ 240
           LL VSPYL+KR+KQHFHHL+++GIDLILGCNGFIW+GEH++ K+D M+ED V++      
Sbjct: 185 LLRVSPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHIEAKDD-MVEDQVNQSDPQVL 244

Query: 241 -PEQKALKFEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNI 300
            P + ++  E   ++ YT LETR+ ICR ANAIRVLSTLGF +T+E+I  I++LS+SLN+
Sbjct: 245 LPSKNSVSLE-EQEKSYTTLETRKYICRAANAIRVLSTLGFNITLEIIKGIIDLSLSLNL 304

Query: 301 DVHEMLGSEFCVLTAEKEVERRSSSKKR 322
           D+H+MLGSEFCVL AEKE ERRSS+KK+
Sbjct: 305 DIHDMLGSEFCVLVAEKEAERRSSNKKK 330

[Close]

BLAST of MELO3C008880T1 vs. TAIR10
Match: AT1G03360.1 (AT1G03360.1 ribosomal RNA processing 4)

HSP 1 Score: 431.0 bits (1107), Expect = 6.4e-121
Identity = 213/322 (66.15%), Postives = 261/322 (81.06%), Query Frame = 1


Query: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQL L+ TQK+R ERA ERL+SLSS  NSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GE++A++CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKA 240
           QLL V PYL+KR K HFH+++  GIDLI+GCNGFIW+GEHV+ ++   I+D   K E+  
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDD--QKDEEMI 242

Query: 241 LKFEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEML 300
                  ++ + PLETRQ ICR  NAIRVLS LGF +T+EVIME VNLS S NID+H+ML
Sbjct: 243 SSSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNIDIHDML 302

Query: 301 GSEFCVLTAEKEVERRSSSKKR 322
           GSEF V+ AE E ERR + +K+
Sbjct: 303 GSEFHVVVAENEAERRRTKRKK 322

[Close]

BLAST of MELO3C008880T1 vs. NCBI nr
Match: gi|659082839|ref|XP_008442058.1| (PREDICTED: exosome complex component RRP4 isoform X1 [Cucumis melo])

HSP 1 Score: 636.0 bits (1639), Expect = 3.7e-179
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1


Query: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 15  MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 74

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 75  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 134

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 135 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 194

Query: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 240
           LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL
Sbjct: 195 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 254

Query: 241 KFEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEMLG 300
           KFEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEMLG
Sbjct: 255 KFEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEMLG 314

Query: 301 SEFCVLTAEKEVERRSSSKKRG 323
           SEFCVLTAEKEVERRSSSKKRG
Sbjct: 315 SEFCVLTAEKEVERRSSSKKRG 336

[Close]

BLAST of MELO3C008880T1 vs. NCBI nr
Match: gi|659082845|ref|XP_008442061.1| (PREDICTED: exosome complex component RRP4 isoform X2 [Cucumis melo])

HSP 1 Score: 636.0 bits (1639), Expect = 3.7e-179
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1


Query: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 240
           LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL
Sbjct: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 240

Query: 241 KFEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEMLG 300
           KFEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEMLG
Sbjct: 241 KFEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEMLG 300

Query: 301 SEFCVLTAEKEVERRSSSKKRG 323
           SEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 SEFCVLTAEKEVERRSSSKKRG 322

[Close]

BLAST of MELO3C008880T1 vs. NCBI nr
Match: gi|778730897|ref|XP_011659879.1| (PREDICTED: exosome complex component RRP4-like [Cucumis sativus])

HSP 1 Score: 607.8 bits (1566), Expect = 1.1e-170
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 1


Query: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQKA 240
           LL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK 
Sbjct: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240

Query: 241 LKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
            KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 323
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 327

[Close]

BLAST of MELO3C008880T1 vs. NCBI nr
Match: gi|659128828|ref|XP_008464390.1| (PREDICTED: exosome complex component RRP4-like [Cucumis melo])

HSP 1 Score: 540.4 bits (1391), Expect = 2.1e-150
Identity = 273/327 (83.49%), Postives = 294/327 (89.91%), Query Frame = 1


Query: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+ LNHTQ+ RL+ AQ+ L+SLSSK N DASV V DT+P +YEDGVLKGHGTLDLN
Sbjct: 1   MRGLQIFLNHTQQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVV +ICGVVERVNKLIYVR+LRARYKPE+GDIVVGRVTEVAPKRWRLDI+YSQDAVLM
Sbjct: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 240
           LL VSPYL+KRRKQHFHHL+QYGIDLILGCNGFIWIG+HVD  +D MIED V+K EQK  
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVDSTQDTMIEDQVNKIEQKGS 240

Query: 241 KFEGTV-----QEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
           KFEG       + V+TPLETRQNICRTANAIRVLS LGFI+TVEVIME V+LSISLNI+V
Sbjct: 241 KFEGNFGNQMHERVHTPLETRQNICRTANAIRVLSILGFIITVEVIMETVSLSISLNINV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 323
           HEMLGSEF VL AEKEVERRS  KKRG
Sbjct: 301 HEMLGSEFFVLVAEKEVERRSCRKKRG 327

[Close]

BLAST of MELO3C008880T1 vs. NCBI nr
Match: gi|703076477|ref|XP_010090344.1| (hypothetical protein L484_025009 [Morus notabilis])

HSP 1 Score: 506.5 bits (1303), Expect = 3.4e-140
Identity = 250/327 (76.45%), Postives = 291/327 (88.99%), Query Frame = 1


Query: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRG QLSLN TQK+RL+RA E+L+SLSSK NS+ASV VAD+IP+NYEDGVLKGHGT +LN
Sbjct: 5   MRGTQLSLNQTQKVRLQRALEQLESLSSKVNSNASVTVADSIPVNYEDGVLKGHGTSELN 64

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVA++CGVVERVNKL+YVRALRARYKPEVGDI+VGRV  VAPKRWR++INYSQDAVLM
Sbjct: 65  GEVVATVCGVVERVNKLVYVRALRARYKPEVGDIIVGRVVVVAPKRWRIEINYSQDAVLM 124

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKL+RGQ
Sbjct: 125 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLKRGQ 184

Query: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 240
           +L + PYL+KRRKQHFHHL+Q+GIDLILGCNGFIW+GEHV+  +D M+E+ V+K EQ+  
Sbjct: 185 MLTIPPYLVKRRKQHFHHLEQFGIDLILGCNGFIWVGEHVEATDD-MLEEQVNKTEQQIT 244

Query: 241 KFEGT------VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
           K +         ++   PLETRQ++CRTANA+RVLSTLGFI+T+EVI+E VNLS SLN+D
Sbjct: 245 KSDRNSASLEEQEQSSIPLETRQSLCRTANAVRVLSTLGFIVTIEVILETVNLSSSLNLD 304

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKR 322
           VHEMLGSEFCVL AEKE ERR+ +KK+
Sbjct: 305 VHEMLGSEFCVLVAEKEAERRTLNKKK 330

The following BLAST results are available for this feature:

BLAST of MELO3C008880T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RRP4_ARATH	1.1e-119	66.15	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1	[more]
EXOS2_MOUSE	2.2e-46	50.92	Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=1 SV=1	[more]
EXOS2_BOVIN	3.7e-46	50.00	Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1	[more]
EXOS2_HUMAN	1.8e-45	50.00	Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2	[more]
RRP4_SCHPO	1.6e-44	40.48	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of MELO3C008880T1 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QKH6_9ROSA	2.4e-140	76.45	Uncharacterized protein OS=Morus notabilis GN=L484_025009 PE=4 SV=1	[more]
A0A059AYJ7_EUCGR	1.7e-138	74.16	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01542 PE=4 SV=1	[more]
F6HQ49_VITVI	3.0e-135	74.32	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00700 PE=4 SV=...	[more]
A0A022S5G6_ERYGU	1.9e-134	75.16	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010258mg PE=4 SV=1	[more]
A0A151TUE4_CAJCA	1.6e-133	72.56	Exosome complex exonuclease RRP4 OS=Cajanus cajan GN=KK1_009893 PE=4 SV=1	[more]

BLAST of MELO3C008880T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03360.1	6.4e-121	66.15	ribosomal RNA processing 4	[more]

BLAST of MELO3C008880T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082839\|ref\|XP_008442058.1\|	3.7e-179	100.00	PREDICTED: exosome complex component RRP4 isoform X1 [Cucumis melo]	[more]
gi\|659082845\|ref\|XP_008442061.1\|	3.7e-179	100.00	PREDICTED: exosome complex component RRP4 isoform X2 [Cucumis melo]	[more]
gi\|778730897\|ref\|XP_011659879.1\|	1.1e-170	95.72	PREDICTED: exosome complex component RRP4-like [Cucumis sativus]	[more]
gi\|659128828\|ref\|XP_008464390.1\|	2.1e-150	83.49	PREDICTED: exosome complex component RRP4-like [Cucumis melo]	[more]
gi\|703076477\|ref\|XP_010090344.1\|	3.4e-140	76.45	hypothetical protein L484_025009 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004088	KH_dom_type_1
IPR012340	NA-bd_OB-fold
IPR022967	S1_dom
IPR026699	Exosome_RNA_bind1/RRP40/RRP4

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000178	exosome (RNase complex)

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009561	megagametogenesis
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C008880	MELO3C008880	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C008880T1	MELO3C008880T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008880T1.cds7	MELO3C008880T1.cds7	CDS
MELO3C008880T1.cds6	MELO3C008880T1.cds6	CDS
MELO3C008880T1.cds5	MELO3C008880T1.cds5	CDS
MELO3C008880T1.cds4	MELO3C008880T1.cds4	CDS
MELO3C008880T1.cds3	MELO3C008880T1.cds3	CDS
MELO3C008880T1.cds2	MELO3C008880T1.cds2	CDS
MELO3C008880T1.cds1	MELO3C008880T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 179..219 score: 3.2
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 179..317 score: 2.4
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 85..176 score: 3.02
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 90..169 score: 1.
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 10..320 score: 2.1E
None	No IPR available	unknown	Coil	Coil	coord: 9..29 scor
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 10..320 score: 2.1E
None	No IPR available	unknown	SSF110324	Ribosomal L27 protein-like	coord: 44..82 score: 4.1