MELO3C008839T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008839T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cell cycle checkpoint protein RAD1
Location	chr8 : 23961302 .. 23964572 (-)
Sequence length	969

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCGACAACGTCCAAGGTCTCGTGGATGCTTTCACTGCCGTTCGATGGAAACGCCATCAGGTCATTCCCATTTTCCTTCTACTTCACTTTCATTTCCCCCCTCTTTCTAACTCTACAGATTGTTTATCTGGATTAATCTTCATACTCGTTTGTTTAGGATATTAATATTAATTTGCTTGTTTATCACTTAGGACGCCCTAATCGAACTATCGGAACATGGCATCGTTTTGATCGTTGAAGAATCCGGCTGTCTTCAGGCCAAAGTGTATCTGCAGCGTGAGGTTTTGGATTTTGAGTTTGACATTCAGTCTCCTAGTAATAGATTGATAGATTGATTATAAACTGTTAATCCAATAGTTTGGTTGGGAAAAGAAATCTCGTGTTTGTGAAGTTGAAATTGAAGAATAATTATGATTCAATTAGTACTATATCTTGTTTAACTCAATTGAAACGCACATTATCATAAGAATTTATGTCCGAAGAAGGAAATTCGATCTAATGCTTTTCTACATGCCACAGCTTTTCATTCGCTATGAATACAGTGCACAAGCTCGGCCCAGATTTGGAGTGAGCTTAGGGATTTTTGTTGATAGTTTGAATACATTTTCTGTTCCTGGACGTTTAAGCACCATTGAACTCAAATACCCAGGACCTGACATGCAACTTCTTCTCAAGTATGTTCACTTTGCTTCTCTGTGCATTATTTTCCATCTCTATTATATCTCTGTTATAGACTCTATGTTTGTTGGCTTATTATATTGGCAGAGAAAAACCAAGCGATAAAGCTTTTAACTATTCTAATGTTTAGTTAATTTGATTGGTAAGCATTGAATTTGTTTCTGGTTTTTAGGCCCCGTTTGGTATTTGATTTTAGAGGCGTTAATAGTGACAAATTGATTGTGGGGAAATTTAATTGATTTTATTATTTGGTTAAACAAATTGCTTTGAATTGTCAAGTCTAGTTAACGTAGTTTTGGAGATGCTTCCTAAAAAAATTGATCTCTCTCTAACAAACGTTTTGTAAATAAAGCAATCTCAAACTAATCCTTGGACTTGCTATGAGTCTATTGACTGTGAGCAATGTAATTGATCATCTTACATTTGCCAGCTATGTCCCTAGTAGCTTTGTTTTTTCTCTTTTTTATAAAACCACGTCTCCGAATTCTTTAAGGTTACTAACAGAGGTTTATAAGTCAAGTCATATGGTATTAGTAAGGGCATAGACGCATAAGGGTATTTAACTAGAAGTTGGTGTATTTTGTAATAAATAGAGGGAGGGGTGGAGAGAACAAATAATTGTTGAGTGGTTTTGGGCTTGAGTTAGTATACTCAAGAGGGAAGGTTCCAGTGCCTTATATTTGGTTTATCATGTAGTTCTTAATCTTCTATATTTCAATATACTTCAGATCTTGATTCCTGTTAGGTGGCACCCTAACAAGAAAATGTTAGTATCTTCGTAAAACTTTGGAATTGAGAAACAAATTTAGGTGGACTAATTAGAAATTCTCTTTAGTTTATTTTCCTATGATTGAACAATTTTTATGCAGATCTAGGAGAGAAAAGGCACTTCAAAACGTAAGTAACTTACTCCAAGTTTATTATCAGGACGGTTGATTCATTAGATGCTTGCATTTATGCGGAGATCAGAACCAGAATCCCAGATACGATCTCATGGGATTACAATTTTGAACCTGCTGGAAGCAGCCCACTCAGTTTCACCGTCAAGGTATAAGTTCATATTGTCATTAACTTTGAAATCTTTTTATATATGCCAAGGATGACACCTGATATGGTTCCTAGAAGACATAAAGCTGAAGGCAAGAGAATAATGAGAAGGAATAAGTTATGAATCTAAATATTATATTACAGATCATCAAAGAAAAATAACTGGAGCTTGTTGTTTAAATACCAGTCTGCAGCACTGAAGGAAGCTATTGATGATCTTGAATGGCCTGGATCAAGTGTCCTTATAGCTCTACAACCGTCTCCCCCTTCTGTCACCTTCAAAGCTGAAGGCCATGGAGACTTGCAGGTATGGTTTGTCGTAATCAAACTGAAATGTCAAATTCTTGTTACGTGGGTAAAAATGAGCATGGCTCAACTTCGAACATGTATTATTAACCTCAAGGTTGGAGGTTCAGTCCTCCCACCACACATATTGTTGAAAAAAATAATATAAATATATATATTAGGAGTTAGGTTAAAAAGATTTAAAAAACACTTTTTGTCCCGCATTTTCAATTTTTTAAAAACTTCTTGAACTCAGTTTCTTGCTTCGCACCTAACTTTCGATCTAGGTTTTCCTAGCAATAAGACGATTTTTACGTTCAAACTCCACCCTAGGGTGGATGCAAACCCCGTTTCATCCTTTGAATCTTGTAATTTATATCTTGAAAAATATTATTAAGATTTAATGAAGTTTCTTACATGTATGGATCCATAAACTAATCGGAAACAAATCTATTTATGAATTATAAATACTTAGCTGTTATGTATATTGAAGCTTAACATCTGATTTCAATTTTTCGAGATAGGAACCAAATTATTAAAAAATTCAAAGTATAATGACTAAGTTGTTACTTATTAAAATATAATGAAAATTGTTACTTATTAAATTGTTATAAATTTTGAAGTATAAGTACTAAGTCCTCACCAATGAAAATTTAAGGACTAAATTGTTTCTTCTAAGTTTAGAAACTAAAAAGTTTTTGTAAAACGTATATATTAATACAACCTAATCCTTCCTTTGCAGGTGGATTTCATGTATTATGCAAATACCGATCTTCTAATCTCGTTCCATTGCGATCGACAAGTATCCTACAGGTAACACGGTTCCTTCACAAAGTTAAACATATCAAATCCTAACACATACTTCACTCCGCCACAATTTTTGTTTTTGTTTGATCTTCAATGAATTAGGTACAAATACAAGTTTCTCCGTGCGACAACTTCGAACATACCAAGCAGTGTGATAAGAGAAAATAGAGGAAGCAAACTGACTATTGGGAGAGGAGGATTGCTAAAAGTTCAACACCTTGTTTCTGTTGCAAAACCATCAACTTCGCACACACATATAGATTCTGCTGGCTATCAGCAACCCAGTAGAATTGCTTTCATTGAGTTCTTTGTAAAACCCGAAGAAGATTCCTCAAATGATTAGTAGACTTTTTTAAAATGTTATTATTTTTTTAAACATTACATTGTATTTGGAGCGGAGTAGTCGAACTTTTGACTTACTAGAGAAGTAGAGATGTCTTAAGCTGTTGAAC

mRNA sequence

ACTTCGACAACGTCCAAGGTCTCGTGGATGCTTTCACTGCCGTTCGATGGAAACGCCATCAGGACGCCCTAATCGAACTATCGGAACATGGCATCGTTTTGATCGTTGAAGAATCCGGCTGTCTTCAGGCCAAAGTGTATCTGCAGCGTGAGCTTTTCATTCGCTATGAATACAGTGCACAAGCTCGGCCCAGATTTGGAGTGAGCTTAGGGATTTTTGTTGATAGTTTGAATACATTTTCTGTTCCTGGACGTTTAAGCACCATTGAACTCAAATACCCAGGACCTGACATGCAACTTCTTCTCAAGACGGTTGATTCATTAGATGCTTGCATTTATGCGGAGATCAGAACCAGAATCCCAGATACGATCTCATGGGATTACAATTTTGAACCTGCTGGAAGCAGCCCACTCAGTTTCACCGTCAAGTCTGCAGCACTGAAGGAAGCTATTGATGATCTTGAATGGCCTGGATCAAGTGTCCTTATAGCTCTACAACCGTCTCCCCCTTCTGTCACCTTCAAAGCTGAAGGCCATGGAGACTTGCAGGTGGATTTCATGTATTATGCAAATACCGATCTTCTAATCTCGTTCCATTGCGATCGACAAGTATCCTACAGGTACAAATACAAGTTTCTCCGTGCGACAACTTCGAACATACCAAGCAGTGTGATAAGAGAAAATAGAGGAAGCAAACTGACTATTGGGAGAGGAGGATTGCTAAAAGTTCAACACCTTGTTTCTGTTGCAAAACCATCAACTTCGCACACACATATAGATTCTGCTGGCTATCAGCAACCCAGTAGAATTGCTTTCATTGAGTTCTTTGTAAAACCCGAAGAAGATTCCTCAAATGATTAGTAGACTTTTTTAAAATGTTATTATTTTTTTAAACATTACATTGTATTTGGAGCGGAGTAGTCGAACTTTTGACTTACTAGAGAAGTAGAGATGTCTTAAGCTGTTGAAC

Coding sequence (CDS)

ATGCAACTTCTTCTCAAGACGGTTGATTCATTAGATGCTTGCATTTATGCGGAGATCAGAACCAGAATCCCAGATACGATCTCATGGGATTACAATTTTGAACCTGCTGGAAGCAGCCCACTCAGTTTCACCGTCAAGTCTGCAGCACTGAAGGAAGCTATTGATGATCTTGAATGGCCTGGATCAAGTGTCCTTATAGCTCTACAACCGTCTCCCCCTTCTGTCACCTTCAAAGCTGAAGGCCATGGAGACTTGCAGGTGGATTTCATGTATTATGCAAATACCGATCTTCTAATCTCGTTCCATTGCGATCGACAAGTATCCTACAGGTACAAATACAAGTTTCTCCGTGCGACAACTTCGAACATACCAAGCAGTGTGATAAGAGAAAATAGAGGAAGCAAACTGACTATTGGGAGAGGAGGATTGCTAAAAGTTCAACACCTTGTTTCTGTTGCAAAACCATCAACTTCGCACACACATATAGATTCTGCTGGCTATCAGCAACCCAGTAGAATTGCTTTCATTGAGTTCTTTGTAAAACCCGAAGAAGATTCCTCAAATGATTAG

Protein sequence

MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFVKPEEDSSND*

Homology

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BLAST of MELO3C008839T1 vs. TrEMBL
Match: A0A0A0L199_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188390 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 2.8e-101
Identity = 186/189 (98.41%), Postives = 187/189 (98.94%), Query Frame = 1


Query: 1   MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 60
           MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP
Sbjct: 113 MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 172

Query: 61  GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT 120
           GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCD+QVSYRYKYKFLRATT
Sbjct: 173 GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDQQVSYRYKYKFLRATT 232

Query: 121 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV 180
           SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSV KPSTSHTHIDSAGYQQPSRIAFIEFFV
Sbjct: 233 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVGKPSTSHTHIDSAGYQQPSRIAFIEFFV 292

Query: 181 KPEEDSSND 190
           KPEEDS ND
Sbjct: 293 KPEEDSPND 301

[Close]

BLAST of MELO3C008839T1 vs. TrEMBL
Match: F6HT64_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01770 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.0e-90
Identity = 162/184 (88.04%), Postives = 176/184 (95.65%), Query Frame = 1


Query: 1   MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 60
           MQLLLK+VDS+DACIYAEIRTRIPDTISWDYNFEPAGS+PLSFTVKSAALKEAIDDLEWP
Sbjct: 108 MQLLLKSVDSMDACIYAEIRTRIPDTISWDYNFEPAGSTPLSFTVKSAALKEAIDDLEWP 167

Query: 61  GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT 120
           GSS+ I L+P PPSVTF+ EGHGDLQ+DFMYYANTDLLI+FHCD +VSYRYKYKFLRATT
Sbjct: 168 GSSIQITLEPVPPSVTFRGEGHGDLQIDFMYYANTDLLIAFHCDHRVSYRYKYKFLRATT 227

Query: 121 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV 180
           SNIPSSVIR+NRGSKLTIGRGG+LKVQHLVSVA+PS  H H+DSAGYQQPSRIA+IEFFV
Sbjct: 228 SNIPSSVIRDNRGSKLTIGRGGMLKVQHLVSVARPSIPHPHVDSAGYQQPSRIAYIEFFV 287

Query: 181 KPEE 185
           KPEE
Sbjct: 288 KPEE 291

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BLAST of MELO3C008839T1 vs. TrEMBL
Match: M5WU82_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009135mg PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 6.5e-90
Identity = 161/185 (87.03%), Postives = 175/185 (94.59%), Query Frame = 1


Query: 1   MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 60
           MQLLLK+VDSLDACIYAEIRTRIPDT+SWDYNFEPAGS+PL+FTVKSAALKEAIDDLEWP
Sbjct: 114 MQLLLKSVDSLDACIYAEIRTRIPDTVSWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP 173

Query: 61  GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT 120
           GSS+ I LQP PP VTF+ EGHGDLQ+D MYY NTDLL++FHCDRQVSY+YKYKFLRATT
Sbjct: 174 GSSIQINLQPVPPIVTFRGEGHGDLQIDLMYYVNTDLLVAFHCDRQVSYKYKYKFLRATT 233

Query: 121 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV 180
           SNIP SVI++NRGSKLTIGRGGLLKVQHLVSVA+PSTSH  IDSAGYQQPSRIA+IEFFV
Sbjct: 234 SNIPGSVIKDNRGSKLTIGRGGLLKVQHLVSVARPSTSHPRIDSAGYQQPSRIAYIEFFV 293

Query: 181 KPEED 186
           KPEED
Sbjct: 294 KPEED 298

[Close]

BLAST of MELO3C008839T1 vs. TrEMBL
Match: B9MU53_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02150g PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.5e-89
Identity = 160/185 (86.49%), Postives = 175/185 (94.59%), Query Frame = 1


Query: 1   MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 60
           MQLL+K+ DSLD CIYAEIRTRIP+TISWDYNFEPAGS+PLSFTVKSAALKEAIDDLEWP
Sbjct: 113 MQLLIKSADSLDDCIYAEIRTRIPETISWDYNFEPAGSTPLSFTVKSAALKEAIDDLEWP 172

Query: 61  GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT 120
           GS + I L+P PPSVTF+ EGHGDLQ+DFMYYANTDLLI+FHCD QVSYRYKYKFLRATT
Sbjct: 173 GSCIQIILKPVPPSVTFRGEGHGDLQIDFMYYANTDLLIAFHCDHQVSYRYKYKFLRATT 232

Query: 121 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV 180
           SN+PSSV ++NRGSKLTIGRGG+LKVQHLVSVA+PSTSH HIDSAGYQQPSRIA+IEFFV
Sbjct: 233 SNMPSSVTKDNRGSKLTIGRGGMLKVQHLVSVARPSTSHQHIDSAGYQQPSRIAYIEFFV 292

Query: 181 KPEED 186
           KPEED
Sbjct: 293 KPEED 297

[Close]

BLAST of MELO3C008839T1 vs. TrEMBL
Match: W9RDU4_9ROSA (Cell cycle checkpoint protein RAD1 OS=Morus notabilis GN=L484_017768 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.5e-89
Identity = 160/185 (86.49%), Postives = 176/185 (95.14%), Query Frame = 1


Query: 1   MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 60
           MQLLLK+VDSLDA IYAEIRTRIPDTISWDYNFEPAGS+PL+FTVK+AALKEAIDDLEWP
Sbjct: 113 MQLLLKSVDSLDASIYAEIRTRIPDTISWDYNFEPAGSTPLTFTVKTAALKEAIDDLEWP 172

Query: 61  GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT 120
           G+S+ I +QP+PPSVTF+ +GHGDLQ+DFMYYAN DLL++FHCDRQVSYRYKYKFLRATT
Sbjct: 173 GASIQITVQPNPPSVTFRGDGHGDLQIDFMYYANADLLLAFHCDRQVSYRYKYKFLRATT 232

Query: 121 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV 180
           SNIP SVIR+NRGSKLTIGRGGLLKVQHLVSVA+ STSHTHIDS GYQ PSRIA+IEFFV
Sbjct: 233 SNIPGSVIRDNRGSKLTIGRGGLLKVQHLVSVARTSTSHTHIDSTGYQHPSRIAYIEFFV 292

Query: 181 KPEED 186
           KPEED
Sbjct: 293 KPEED 297

[Close]

BLAST of MELO3C008839T1 vs. TAIR10
Match: AT4G17760.1 (AT4G17760.1 damaged DNA binding;exodeoxyribonuclease IIIs)

HSP 1 Score: 293.5 bits (750), Expect = 9.3e-80
Identity = 139/184 (75.54%), Postives = 163/184 (88.59%), Query Frame = 1


Query: 1   MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 60
           M+LLLK+VD+L++CIY+EIRTRIP+T++WDYNFE AG +PL+FTVKSAALKEAIDDLEWP
Sbjct: 116 MELLLKSVDTLNSCIYSEIRTRIPETVTWDYNFEQAGIAPLTFTVKSAALKEAIDDLEWP 175

Query: 61  GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT 120
           GSSV I+LQ  PP V F+ EGHGDLQ+DFMYYANTDLL++FHCD +VSY YKYKFL+ATT
Sbjct: 176 GSSVQISLQKEPPCVIFRGEGHGDLQIDFMYYANTDLLLAFHCDTEVSYGYKYKFLKATT 235

Query: 121 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV 180
           +NIP +V+RENRGSKLTIGRGG+LKVQHLVSV+K       ++SAGYQ PSRIA+IEFFV
Sbjct: 236 ANIPGNVVRENRGSKLTIGRGGMLKVQHLVSVSKALA--PQVESAGYQPPSRIAYIEFFV 295

Query: 181 KPEE 185
           KPEE
Sbjct: 296 KPEE 297

[Close]

BLAST of MELO3C008839T1 vs. NCBI nr
Match: gi|659082765|ref|XP_008442021.1| (PREDICTED: cell cycle checkpoint protein RAD1 [Cucumis melo])

HSP 1 Score: 380.9 bits (977), Expect = 1.3e-102
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1


Query: 1   MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 60
           MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP
Sbjct: 113 MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 172

Query: 61  GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT 120
           GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT
Sbjct: 173 GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT 232

Query: 121 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV 180
           SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV
Sbjct: 233 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV 292

Query: 181 KPEEDSSND 190
           KPEEDSSND
Sbjct: 293 KPEEDSSND 301

[Close]

BLAST of MELO3C008839T1 vs. NCBI nr
Match: gi|449462759|ref|XP_004149108.1| (PREDICTED: uncharacterized protein LOC101219270 [Cucumis sativus])

HSP 1 Score: 375.9 bits (964), Expect = 4.1e-101
Identity = 186/189 (98.41%), Postives = 187/189 (98.94%), Query Frame = 1


Query: 1   MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 60
           MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP
Sbjct: 113 MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 172

Query: 61  GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT 120
           GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCD+QVSYRYKYKFLRATT
Sbjct: 173 GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDQQVSYRYKYKFLRATT 232

Query: 121 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV 180
           SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSV KPSTSHTHIDSAGYQQPSRIAFIEFFV
Sbjct: 233 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVGKPSTSHTHIDSAGYQQPSRIAFIEFFV 292

Query: 181 KPEEDSSND 190
           KPEEDS ND
Sbjct: 293 KPEEDSPND 301

[Close]

BLAST of MELO3C008839T1 vs. NCBI nr
Match: gi|694419519|ref|XP_009337717.1| (PREDICTED: uncharacterized protein LOC103930144 [Pyrus x bretschneideri])

HSP 1 Score: 343.2 bits (879), Expect = 2.9e-91
Identity = 163/185 (88.11%), Postives = 178/185 (96.22%), Query Frame = 1


Query: 1   MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 60
           MQLLLK+VDSLDACIYAEIRTRIPDT+SWDYNFEPAGS+PL+FTVKSAALKEAIDDLEWP
Sbjct: 113 MQLLLKSVDSLDACIYAEIRTRIPDTVSWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP 172

Query: 61  GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT 120
           GSS+ I+LQP PP+VTF+ EGHGDLQ+D MYY NTDLL++FHCDRQVSYRYKYKFLRATT
Sbjct: 173 GSSIQISLQPVPPTVTFRGEGHGDLQIDLMYYVNTDLLVAFHCDRQVSYRYKYKFLRATT 232

Query: 121 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV 180
           SNIPSSVI++NRGSKLTIGRGGLLKVQHLVSVA+PSTSH  IDSAGYQQPSRIA+IEFFV
Sbjct: 233 SNIPSSVIKDNRGSKLTIGRGGLLKVQHLVSVARPSTSHPRIDSAGYQQPSRIAYIEFFV 292

Query: 181 KPEED 186
           KPEED
Sbjct: 293 KPEED 297

[Close]

BLAST of MELO3C008839T1 vs. NCBI nr
Match: gi|225427149|ref|XP_002277302.1| (PREDICTED: uncharacterized protein LOC100255740 isoform X1 [Vitis vinifera])

HSP 1 Score: 340.9 bits (873), Expect = 1.4e-90
Identity = 162/184 (88.04%), Postives = 176/184 (95.65%), Query Frame = 1


Query: 1   MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 60
           MQLLLK+VDS+DACIYAEIRTRIPDTISWDYNFEPAGS+PLSFTVKSAALKEAIDDLEWP
Sbjct: 108 MQLLLKSVDSMDACIYAEIRTRIPDTISWDYNFEPAGSTPLSFTVKSAALKEAIDDLEWP 167

Query: 61  GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT 120
           GSS+ I L+P PPSVTF+ EGHGDLQ+DFMYYANTDLLI+FHCD +VSYRYKYKFLRATT
Sbjct: 168 GSSIQITLEPVPPSVTFRGEGHGDLQIDFMYYANTDLLIAFHCDHRVSYRYKYKFLRATT 227

Query: 121 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV 180
           SNIPSSVIR+NRGSKLTIGRGG+LKVQHLVSVA+PS  H H+DSAGYQQPSRIA+IEFFV
Sbjct: 228 SNIPSSVIRDNRGSKLTIGRGGMLKVQHLVSVARPSIPHPHVDSAGYQQPSRIAYIEFFV 287

Query: 181 KPEE 185
           KPEE
Sbjct: 288 KPEE 291

[Close]

BLAST of MELO3C008839T1 vs. NCBI nr
Match: gi|731380724|ref|XP_010663275.1| (PREDICTED: uncharacterized protein LOC100255740 isoform X2 [Vitis vinifera])

HSP 1 Score: 340.9 bits (873), Expect = 1.4e-90
Identity = 162/184 (88.04%), Postives = 176/184 (95.65%), Query Frame = 1


Query: 1   MQLLLKTVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWP 60
           MQLLLK+VDS+DACIYAEIRTRIPDTISWDYNFEPAGS+PLSFTVKSAALKEAIDDLEWP
Sbjct: 74  MQLLLKSVDSMDACIYAEIRTRIPDTISWDYNFEPAGSTPLSFTVKSAALKEAIDDLEWP 133

Query: 61  GSSVLIALQPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATT 120
           GSS+ I L+P PPSVTF+ EGHGDLQ+DFMYYANTDLLI+FHCD +VSYRYKYKFLRATT
Sbjct: 134 GSSIQITLEPVPPSVTFRGEGHGDLQIDFMYYANTDLLIAFHCDHRVSYRYKYKFLRATT 193

Query: 121 SNIPSSVIRENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFV 180
           SNIPSSVIR+NRGSKLTIGRGG+LKVQHLVSVA+PS  H H+DSAGYQQPSRIA+IEFFV
Sbjct: 194 SNIPSSVIRDNRGSKLTIGRGGMLKVQHLVSVARPSIPHPHVDSAGYQQPSRIAYIEFFV 253

Query: 181 KPEE 185
           KPEE
Sbjct: 254 KPEE 257

The following BLAST results are available for this feature:

BLAST of MELO3C008839T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L199_CUCSA	2.8e-101	98.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188390 PE=4 SV=1	[more]
F6HT64_VITVI	1.0e-90	88.04	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01770 PE=4 SV=...	[more]
M5WU82_PRUPE	6.5e-90	87.03	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009135mg PE=4 SV=1	[more]
B9MU53_POPTR	1.5e-89	86.49	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02150g PE=4 SV=1	[more]
W9RDU4_9ROSA	1.5e-89	86.49	Cell cycle checkpoint protein RAD1 OS=Morus notabilis GN=L484_017768 PE=4 SV=1	[more]

BLAST of MELO3C008839T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17760.1	9.3e-80	75.54	damaged DNA binding;exodeoxyribonuclease IIIs	[more]

BLAST of MELO3C008839T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082765\|ref\|XP_008442021.1\|	1.3e-102	100.00	PREDICTED: cell cycle checkpoint protein RAD1 [Cucumis melo]	[more]
gi\|449462759\|ref\|XP_004149108.1\|	4.1e-101	98.41	PREDICTED: uncharacterized protein LOC101219270 [Cucumis sativus]	[more]
gi\|694419519\|ref\|XP_009337717.1\|	2.9e-91	88.11	PREDICTED: uncharacterized protein LOC103930144 [Pyrus x bretschneideri]	[more]
gi\|225427149\|ref\|XP_002277302.1\|	1.4e-90	88.04	PREDICTED: uncharacterized protein LOC100255740 isoform X1 [Vitis vinifera]	[more]
gi\|731380724\|ref\|XP_010663275.1\|	1.4e-90	88.04	PREDICTED: uncharacterized protein LOC100255740 isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003021	Rad1_Rec1_Rad17

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0000077	DNA damage checkpoint
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C008839	MELO3C008839	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C008839T1	MELO3C008839T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008839T1.cds5	MELO3C008839T1.cds5	CDS
MELO3C008839T1.cds4	MELO3C008839T1.cds4	CDS
MELO3C008839T1.cds3	MELO3C008839T1.cds3	CDS
MELO3C008839T1.cds2	MELO3C008839T1.cds2	CDS
MELO3C008839T1.cds1	MELO3C008839T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003021	Rad1/Rec1/Rad17	PANTHER	PTHR10870	CELL CYCLE CHECKPOINT PROTEIN RAD1	coord: 1..189 score: 1.5
IPR003021	Rad1/Rec1/Rad17	PFAM	PF02144	Rad1	coord: 18..126 score: 1.
None	No IPR available	GENE3D	G3DSA:3.70.10.10		coord: 36..125 score: 4.
None	No IPR available	PANTHER	PTHR10870:SF0	CELL CYCLE CHECKPOINT PROTEIN RAD1	coord: 1..189 score: 1.5
None	No IPR available	unknown	SSF55979	DNA clamp	coord: 42..149 score: 1.39