MELO3C008744.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008744.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Auxin efflux carrier component
Location	chr05 : 18353157 .. 18353312 (+)
Sequence length	156

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTGCAAGAAAAATTGATAGCTTGTGGACCAACACTCACTATAGTTGAAATGGTGTTGAAGTTTATTGCTGGACCAGCTGCAATGGCCATTGGCTCCGTTGCCATGGGTTTGCATGGTGATGTTCTTCGTGTAGCTATAGTTCAGGTTTAA

mRNA sequence

ATGGCATTGCAAGAAAAATTGATAGCTTGTGGACCAACACTCACTATAGTTGAAATGGTGTTGAAGTTTATTGCTGGACCAGCTGCAATGGCCATTGGCTCCGTTGCCATGGGTTTGCATGGTGATGTTCTTCGTGTAGCTATAGTTCAGGTTTAA

Coding sequence (CDS)

ATGGCATTGCAAGAAAAATTGATAGCTTGTGGACCAACACTCACTATAGTTGAAATGGTGTTGAAGTTTATTGCTGGACCAGCTGCAATGGCCATTGGCTCCGTTGCCATGGGTTTGCATGGTGATGTTCTTCGTGTAGCTATAGTTCAGGTTTAA

Protein sequence

MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQV

Homology

[Close]

BLAST of MELO3C008744.2.1 vs. NCBI nr
Match: XP_008441865.1 (PREDICTED: putative auxin efflux carrier component 8 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1  MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
          MALQEKLIACGPTLTIV MVLKFIAGPAAMAIGSVAMGLHGDVLRVAI+Q
Sbjct: 28 MALQEKLIACGPTLTIVGMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIIQ 77

[Close]

BLAST of MELO3C008744.2.1 vs. NCBI nr
Match: XP_004152830.1 (PREDICTED: putative auxin efflux carrier component 8 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLIACGPTLTIV MVLKFIAGPAAMAIGS+AMGLHGDVLRVAI+Q
Sbjct: 272 MALQEKLIACGPTLTIVGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ 321

[Close]

BLAST of MELO3C008744.2.1 vs. NCBI nr
Match: KGN61255.1 (hypothetical protein Csa_2G074170 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLIACGPTLTIV MVLKFIAGPAAMAIGS+AMGLHGDVLRVAI+Q
Sbjct: 270 MALQEKLIACGPTLTIVGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ 319

[Close]

BLAST of MELO3C008744.2.1 vs. NCBI nr
Match: XP_022937707.1 (auxin efflux carrier component 5 [Cucurbita moschata])

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-14
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLIACG TLTI+ MVLKFIAGPAAMAIGS+AMGLHGDVLRVAI+Q
Sbjct: 272 MALQEKLIACGATLTIIGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ 321

[Close]

BLAST of MELO3C008744.2.1 vs. NCBI nr
Match: XP_022966048.1 (auxin efflux carrier component 5 [Cucurbita maxima])

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-14
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLIACG TLTI+ MVLKFIAGPAAMAIGS+AMGLHGDVLRVAI+Q
Sbjct: 272 MALQEKLIACGATLTIIGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ 321

[Close]

BLAST of MELO3C008744.2.1 vs. TAIR10
Match: AT5G16530.1 (Auxin efflux carrier family protein)

HSP 1 Score: 80.1 bits (196), Expect = 4.3e-16
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLI CG +LT++ MVLKFIAGPAAMAIGS+ +GLHGDVLRVAI+Q
Sbjct: 253 MALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVAIIQ 302

[Close]

BLAST of MELO3C008744.2.1 vs. TAIR10
Match: AT2G01420.2 (Auxin efflux carrier family protein)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-10
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ K+IACG ++    M ++FI GPA MA+  +A+GLHGD+LR+AIVQ
Sbjct: 520 MALQPKIIACGNSVATFAMAVRFITGPAIMAVAGIAIGLHGDLLRIAIVQ 569

[Close]

BLAST of MELO3C008744.2.1 vs. TAIR10
Match: AT1G70940.1 (Auxin efflux carrier family protein)

HSP 1 Score: 59.7 bits (143), Expect = 6.1e-10
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ KLIACG ++    M ++F+ GPA MA+ ++A+GL GD+LRVAIVQ
Sbjct: 544 MALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIAIGLRGDLLRVAIVQ 593

[Close]

BLAST of MELO3C008744.2.1 vs. TAIR10
Match: AT1G23080.1 (Auxin efflux carrier family protein)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-09
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ KLIACG +     M ++F  GPA MA+ ++A+GL GD+LRVAIVQ
Sbjct: 523 MALQPKLIACGNSTATFAMAVRFFTGPAVMAVAAMAIGLRGDLLRVAIVQ 572

[Close]

BLAST of MELO3C008744.2.1 vs. TAIR10
Match: AT5G57090.1 (Auxin efflux carrier family protein)

HSP 1 Score: 52.4 bits (124), Expect = 9.7e-08
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ K+IACG ++    M ++F+ GPA +A  S+A+G+ GD+L +AIVQ
Sbjct: 551 MALQPKIIACGKSVAGFAMAVRFLTGPAVIAATSIAIGIRGDLLHIAIVQ 600

[Close]

BLAST of MELO3C008744.2.1 vs. Swiss-Prot
Match: sp|Q9FFD0|PIN5_ARATH (Auxin efflux carrier component 5 OS=Arabidopsis thaliana OX=3702 GN=PIN5 PE=2 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 7.8e-15
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLI CG +LT++ MVLKFIAGPAAMAIGS+ +GLHGDVLRVAI+Q
Sbjct: 253 MALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVAIIQ 302

[Close]

BLAST of MELO3C008744.2.1 vs. Swiss-Prot
Match: sp|Q5JLM1|PIN5A_ORYSJ (Probable auxin efflux carrier component 5a OS=Oryza sativa subsp. japonica OX=39947 GN=PIN5A PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.0e-11
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MA QEK+IACG +   + +VLKF  GPAAMAIGS+A+GL GDVLRVAI+Q
Sbjct: 265 MAQQEKIIACGTSFAALGLVLKFALGPAAMAIGSIAVGLRGDVLRVAIIQ 314

[Close]

BLAST of MELO3C008744.2.1 vs. Swiss-Prot
Match: sp|D5A7J3|PIN5B_ORYSJ (Probable auxin efflux carrier component 5b OS=Oryza sativa subsp. japonica OX=39947 GN=PIN5B PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.4e-10
Identity = 30/50 (60.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ+K+I CG  LT++ M L+F+AGPAA A+G+ A+GL GD+LR+AI+Q
Sbjct: 270 MALQDKIIVCGAGLTVLGMALRFVAGPAATAVGAFALGLRGDLLRLAIIQ 319

[Close]

BLAST of MELO3C008744.2.1 vs. Swiss-Prot
Match: sp|Q8RWZ6|PIN4_ARATH (Auxin efflux carrier component 4 OS=Arabidopsis thaliana OX=3702 GN=PIN4 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-09
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ K+IACG ++    M ++FI GPA MA+  +A+GLHGD+LR+AIVQ
Sbjct: 520 MALQPKIIACGNSVATFAMAVRFITGPAIMAVAGIAIGLHGDLLRIAIVQ 569

[Close]

BLAST of MELO3C008744.2.1 vs. Swiss-Prot
Match: sp|Q9S7Z8|PIN3_ARATH (Auxin efflux carrier component 3 OS=Arabidopsis thaliana OX=3702 GN=PIN3 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-08
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ KLIACG ++    M ++F+ GPA MA+ ++A+GL GD+LRVAIVQ
Sbjct: 544 MALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIAIGLRGDLLRVAIVQ 593

[Close]

BLAST of MELO3C008744.2.1 vs. TrEMBL
Match: tr|A0A1S3B4E6|A0A1S3B4E6_CUCME (putative auxin efflux carrier component 8 OS=Cucumis melo OX=3656 GN=LOC103485893 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.0e-16
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1  MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
          MALQEKLIACGPTLTIV MVLKFIAGPAAMAIGSVAMGLHGDVLRVAI+Q
Sbjct: 28 MALQEKLIACGPTLTIVGMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIIQ 77

[Close]

BLAST of MELO3C008744.2.1 vs. TrEMBL
Match: tr|A0A0A0LH23|A0A0A0LH23_CUCSA (Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=Csa_2G074170 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLIACGPTLTIV MVLKFIAGPAAMAIGS+AMGLHGDVLRVAI+Q
Sbjct: 270 MALQEKLIACGPTLTIVGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ 319

[Close]

BLAST of MELO3C008744.2.1 vs. TrEMBL
Match: tr|A0A1U8AKS6|A0A1U8AKS6_NELNU (Auxin efflux carrier component OS=Nelumbo nucifera OX=4432 GN=LOC104605305 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLIACGP LTI  MVLKFIAGPAAMAIG++A+GLHGDVLRVAI+Q
Sbjct: 265 MALQEKLIACGPPLTIFGMVLKFIAGPAAMAIGAIAVGLHGDVLRVAIIQ 314

[Close]

BLAST of MELO3C008744.2.1 vs. TrEMBL
Match: tr|V7B1G0|V7B1G0_PHAVU (Auxin efflux carrier component OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G055200g PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.5e-13
Identity = 40/50 (80.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ+KLIACGP+LT+  +VLKFIAGPAAMAIG++A+GLHGDVLRVAI+Q
Sbjct: 280 MALQDKLIACGPSLTVFGLVLKFIAGPAAMAIGAIAVGLHGDVLRVAIIQ 329

[Close]

BLAST of MELO3C008744.2.1 vs. TrEMBL
Match: tr|D7M857|D7M857_ARALL (Auxin efflux carrier component OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_326097 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.5e-13
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLI CG +LT++ MVLKFIAGPAAMAIGS+A+GLHGDVLRVAI+Q
Sbjct: 254 MALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIALGLHGDVLRVAIIQ 303

The following BLAST results are available for this feature:

BLAST of MELO3C008744.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441865.1	1.4e-15	96.00	PREDICTED: putative auxin efflux carrier component 8 [Cucumis melo]	[more]
XP_004152830.1	1.8e-15	94.00	PREDICTED: putative auxin efflux carrier component 8 [Cucumis sativus]	[more]
KGN61255.1	1.8e-15	94.00	hypothetical protein Csa_2G074170 [Cucumis sativus]	[more]
XP_022937707.1	2.0e-14	90.00	auxin efflux carrier component 5 [Cucurbita moschata]	[more]
XP_022966048.1	2.0e-14	90.00	auxin efflux carrier component 5 [Cucurbita maxima]	[more]

BLAST of MELO3C008744.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16530.1	4.3e-16	80.00	Auxin efflux carrier family protein	[more]
AT2G01420.2	1.6e-10	58.00	Auxin efflux carrier family protein	[more]
AT1G70940.1	6.1e-10	58.00	Auxin efflux carrier family protein	[more]
AT1G23080.1	3.0e-09	58.00	Auxin efflux carrier family protein	[more]
AT5G57090.1	9.7e-08	50.00	Auxin efflux carrier family protein	[more]

BLAST of MELO3C008744.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FFD0\|PIN5_ARATH	7.8e-15	80.00	Auxin efflux carrier component 5 OS=Arabidopsis thaliana OX=3702 GN=PIN5 PE=2 SV...	[more]
sp\|Q5JLM1\|PIN5A_ORYSJ	9.0e-11	68.00	Probable auxin efflux carrier component 5a OS=Oryza sativa subsp. japonica OX=39...	[more]
sp\|D5A7J3\|PIN5B_ORYSJ	3.4e-10	60.00	Probable auxin efflux carrier component 5b OS=Oryza sativa subsp. japonica OX=39...	[more]
sp\|Q8RWZ6\|PIN4_ARATH	2.9e-09	58.00	Auxin efflux carrier component 4 OS=Arabidopsis thaliana OX=3702 GN=PIN4 PE=1 SV...	[more]
sp\|Q9S7Z8\|PIN3_ARATH	1.1e-08	58.00	Auxin efflux carrier component 3 OS=Arabidopsis thaliana OX=3702 GN=PIN3 PE=1 SV...	[more]

BLAST of MELO3C008744.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B4E6\|A0A1S3B4E6_CUCME	9.0e-16	96.00	putative auxin efflux carrier component 8 OS=Cucumis melo OX=3656 GN=LOC10348589...	[more]
tr\|A0A0A0LH23\|A0A0A0LH23_CUCSA	1.2e-15	94.00	Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=Csa_2G074170 PE=3 S...	[more]
tr\|A0A1U8AKS6\|A0A1U8AKS6_NELNU	1.4e-13	86.00	Auxin efflux carrier component OS=Nelumbo nucifera OX=4432 GN=LOC104605305 PE=3 ...	[more]
tr\|V7B1G0\|V7B1G0_PHAVU	5.5e-13	80.00	Auxin efflux carrier component OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G055200...	[more]
tr\|D7M857\|D7M857_ARALL	5.5e-13	82.00	Auxin efflux carrier component OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=A...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR004776	Mem_trans

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C008744.2	MELO3C008744.2	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008744.2.1.exon.1	MELO3C008744.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008744.2.1.CDS.1	MELO3C008744.2.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C008744.2.1	MELO3C008744.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004776	Membrane transport protein	PFAM	PF03547	Mem_trans	coord: 1..50 e-value: 8.4E-10 score: 37.5
None	No IPR available	PANTHER	PTHR31752	FAMILY NOT NAMED	coord: 1..50
None	No IPR available	PANTHER	PTHR31752:SF2	AUXIN EFFLUX CARRIER COMPONENT 5	coord: 1..50