Lsi11G013840.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G013840.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr11 : 22405826 .. 22406697 (-)
Sequence length	724

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAGTCTTAATTGCCATTCTCTCATTTCTCATCTCTCTTGCTCTTTATGTACCTATAAATACATCTACAAGGATACAAATTTTTCTCATCCCATCTCCAAAAATCAATCTTTCTTACTAAACAAACAAAATGAGTTCCAAAGTTTTTATTTTCGTCGGTCTTCTTCTCGCCTTTGTTCTCCTCTTCTCTTCGGAGGTGGTTGCGAGAGACCTCGCAGAGACCTCCTCCGAGAAGGAAAACGGTTAGTTCTATATAATAAGAACTCTTAATTCATTTAAAAAGTGTAAAATGTACCTTTAATATTCAACTTTTTTTTTTTTTAATAAAAATTTTGAATTCTTTATCGACATTTAAATTAAGATGGACTAATTTTAATGATGATGTTGTAGAGGCTACGGTGGAAATCAATGGCGTAGAGGATGCCAAGTATGGAGGGTACGACAGAGGCTATGGCGGTGGTCGTGGTGGTTACGGTCATGGTGGCTATGGTGGTCGCGGTGGTTACGGTGGTCGTGGTGGCTATGGCGGCCGAGGTGGTTACGGTGGCGGCCACGGAGGGGGTTGCCGGTATGGTAGGTGCGGGCACAGGTGCTGCAACTACGCCGGTGAAGTGGTAGAGGGCGCAAAACCTTAAGACAAGGTGTGGAATGGGGTGAAATAATAAAATAGTTTGAATTTTATGTGTTTGGTTAAATGTGTGAACTGTGAAGCTTGAGAAATAAATACATGGGGAATGGAGTGGCTAGCTTCTAGTTTCTCTTTTTTCCCTATGTTTGGGTTTTAGTATGTTGCTATAGATTTGCTTTTGCAAATTTTTATAATATCAACAAAGATATTTTCACTTTTGGGTGATCGTATTTCCTATTTCGAT

mRNA sequence

GTCAGTCTTAATTGCCATTCTCTCATTTCTCATCTCTCTTGCTCTTTATGTACCTATAAATACATCTACAAGGATACAAATTTTTCTCATCCCATCTCCAAAAATCAATCTTTCTTACTAAACAAACAAAATGAGTTCCAAAGTTTTTATTTTCGTCGGTCTTCTTCTCGCCTTTGTTCTCCTCTTCTCTTCGGAGGTGGTTGCGAGAGACCTCGCAGAGACCTCCTCCGAGAAGGAAAACGAGGCTACGGTGGAAATCAATGGCGTAGAGGATGCCAAGTATGGAGGGTACGACAGAGGCTATGGCGGTGGTCGTGGTGGTTACGGTCATGGTGGCTATGGTGGTCGCGGTGGTTACGGTGGTCGTGGTGGCTATGGCGGCCGAGGTGGTTACGGTGGCGGCCACGGAGGGGGTTGCCGGTATGGTAGGTGCGGGCACAGGTGCTGCAACTACGCCGGTGAAGTGGTAGAGGGCGCAAAACCTTAAGACAAGGTGTGGAATGGGGTGAAATAATAAAATAGTTTGAATTTTATGTGTTTGGTTAAATGTGTGAACTGTGAAGCTTGAGAAATAAATACATGGGGAATGGAGTGGCTAGCTTCTAGTTTCTCTTTTTTCCCTATGTTTGGGTTTTAGTATGTTGCTATAGATTTGCTTTTGCAAATTTTTATAATATCAACAAAGATATTTTCACTTTTGGGTGATCGTATTTCCTATTTCGAT

Coding sequence (CDS)

ATGAGTTCCAAAGTTTTTATTTTCGTCGGTCTTCTTCTCGCCTTTGTTCTCCTCTTCTCTTCGGAGGTGGTTGCGAGAGACCTCGCAGAGACCTCCTCCGAGAAGGAAAACGAGGCTACGGTGGAAATCAATGGCGTAGAGGATGCCAAGTATGGAGGGTACGACAGAGGCTATGGCGGTGGTCGTGGTGGTTACGGTCATGGTGGCTATGGTGGTCGCGGTGGTTACGGTGGTCGTGGTGGCTATGGCGGCCGAGGTGGTTACGGTGGCGGCCACGGAGGGGGTTGCCGGTATGGTAGGTGCGGGCACAGGTGCTGCAACTACGCCGGTGAAGTGGTAGAGGGCGCAAAACCTTAA

Protein sequence

MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGYGGGHGGGCRYGRCGHRCCNYAGEVVEGAKP

Homology

[Close]

BLAST of Lsi11G013840.1 vs. TrEMBL
Match: A0A0A0K6L7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037600 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.5e-33
Identity = 98/124 (79.03%), Postives = 104/124 (83.87%), Query Frame = 1


Query: 1   MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY--GGYDRGY 60
           MSSK F+F+GLLLAFVLL SSEV ARDLAETSS+ +NEATVE NGVEDAKY  GGYDRGY
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79

Query: 61  GGGRG-GYGHGGYGGRGGYGGRGGYGGRGGYGGGHGG---GCRYGRCGHRCCNYAGEVVE 119
           GGG   GYG    GGRGGY GRG YGGRGGYGGG GG   GCRYGRCGH+CC+YAGEVVE
Sbjct: 80  GGGHDRGYG----GGRGGY-GRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVE 138

[Close]

BLAST of Lsi11G013840.1 vs. TrEMBL
Match: A0P8W6_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus GN=CsGRP1 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.5e-33
Identity = 98/124 (79.03%), Postives = 104/124 (83.87%), Query Frame = 1


Query: 1   MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY--GGYDRGY 60
           MSSK F+F+GLLLAFVLL SSEV ARDLAETSS+ +NEATVE NGVEDAKY  GGYDRGY
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  GGGRG-GYGHGGYGGRGGYGGRGGYGGRGGYGGGHGG---GCRYGRCGHRCCNYAGEVVE 119
           GGG   GYG    GGRGGY GRG YGGRGGYGGG GG   GCRYGRCGH+CC+YAGEVVE
Sbjct: 61  GGGHDRGYG----GGRGGY-GRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVE 119

[Close]

BLAST of Lsi11G013840.1 vs. TrEMBL
Match: A0A0A1IXP4_CUCSA (Glycine rich protein OS=Cucumis sativus GN=GRP PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-32
Identity = 97/124 (78.23%), Postives = 103/124 (83.06%), Query Frame = 1


Query: 1   MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY--GGYDRGY 60
           MSSK F+F+GL LAFVLL SSEV ARDLAETSS+ +NEATVE NGVEDAKY  GGYDRGY
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  GGGRG-GYGHGGYGGRGGYGGRGGYGGRGGYGGGHGG---GCRYGRCGHRCCNYAGEVVE 119
           GGG   GYG    GGRGGY GRG YGGRGGYGGG GG   GCRYGRCGH+CC+YAGEVVE
Sbjct: 61  GGGHDRGYG----GGRGGY-GRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVE 119

[Close]

BLAST of Lsi11G013840.1 vs. TrEMBL
Match: A0A0A0K1B1_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus GN=Csa_7G037590 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.2e-29
Identity = 98/160 (61.25%), Postives = 104/160 (65.00%), Query Frame = 1


Query: 1   MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYG--GYDRGY 60
           MSSK F+F+GLLLAFVLL SSEV ARDLAETSS+ +NE TVE NGVEDAKYG  GYDRGY
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEVTVETNGVEDAKYGRGGYDRGY 60

Query: 61  GGGR-------------------------------------GGYGHGGYGGRGGYGGRGG 119
           GGG                                      GGY  G  GGRGGYG RG 
Sbjct: 61  GGGYDRGYGGGYDRGYGGGYDRGYGGGYDRGYGGGYDRGYGGGYDRGYGGGRGGYG-RGH 120

[Close]

BLAST of Lsi11G013840.1 vs. TrEMBL
Match: Q9MBF4_CITUN (Glycine-rich protein OS=Citrus unshiu PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.6e-17
Identity = 74/123 (60.16%), Postives = 87/123 (70.73%), Query Frame = 1


Query: 1   MSSKVFIFVGLLLAFVLLFSSEVVARDLAETS---SEKENEATVEINGVEDAKYGGYDRG 60
           M SK+F+ +GLL+A  LL SSEV ARDLAETS   +EK ++AT E + +ED + GGY+RG
Sbjct: 1   MGSKLFLLLGLLMAIALLISSEVAARDLAETSIDHNEKADKAT-ETHEIEDGR-GGYNRG 60

Query: 61  YGGGRGGYGHGGYGGRGGYGGRGGYGGRGGYGGGHGGGCRYGRCGH------RCCNYAGE 115
             GG  G G GGYGG GGYGG GGYGG GG+GGGH   CRYG CGH      RCC YAGE
Sbjct: 61  GRGGYNGGGRGGYGGGGGYGGGGGYGGGGGHGGGH---CRYGCCGHGYHGGCRCCTYAGE 118

[Close]

BLAST of Lsi11G013840.1 vs. TAIR10
Match: AT2G05540.1 (AT2G05540.1 Glycine-rich protein family)

HSP 1 Score: 57.0 bits (136), Expect = 9.1e-09
Identity = 64/132 (48.48%), Postives = 81/132 (61.36%), Query Frame = 1


Query: 1   MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGG 60
           M+SK  +F+ L++  VLL +SEVVARDLAE S+E++N    E+   E  ++GG+    GG
Sbjct: 1   MASKALLFLSLIV--VLLIASEVVARDLAEKSAEQKNNERDEVKQTE--QFGGFP---GG 60

Query: 61  GRGGYGHGGYGGR--GGYGGR--------GGYGGR-GGYGGGHGGGCRYGRC--GH---- 115
           G GG+  GGYGG   GGYG R        GGYG R GGYG   GG CRYG C  G+    
Sbjct: 61  GYGGFPGGGYGGNPGGGYGNRGGGYRNRDGGYGNRGGGYGNRGGGYCRYGCCYRGYYGGC 120

[Close]

BLAST of Lsi11G013840.1 vs. NCBI nr
Match: gi|659110968|ref|XP_008455506.1| (PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 9.1e-35
Identity = 100/122 (81.97%), Postives = 106/122 (86.89%), Query Frame = 1


Query: 1   MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY-GGYDRGYG 60
           MSSK F+F+GLLLAFVLL SSEV ARDLAET S+ +NEATVE NGVEDAKY GGYDRGYG
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNEATVETNGVEDAKYGGGYDRGYG 60

Query: 61  GGRGGYGHGGYGGRGGYGGRGGYGGRGGYGGGHGG---GCRYGRCGHRCCNYAGEVVEGA 119
           G  GGYG GGY GRGGY GRGGYGGRGGYGGG GG   GCRYGRCG+RCC+YAGEVVEGA
Sbjct: 61  G--GGYGRGGY-GRGGY-GRGGYGGRGGYGGGRGGYGRGCRYGRCGYRCCSYAGEVVEGA 118

[Close]

BLAST of Lsi11G013840.1 vs. NCBI nr
Match: gi|700188223|gb|KGN43456.1| (hypothetical protein Csa_7G037600 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 5.0e-33
Identity = 98/124 (79.03%), Postives = 104/124 (83.87%), Query Frame = 1


Query: 1   MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY--GGYDRGY 60
           MSSK F+F+GLLLAFVLL SSEV ARDLAETSS+ +NEATVE NGVEDAKY  GGYDRGY
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79

Query: 61  GGGRG-GYGHGGYGGRGGYGGRGGYGGRGGYGGGHGG---GCRYGRCGHRCCNYAGEVVE 119
           GGG   GYG    GGRGGY GRG YGGRGGYGGG GG   GCRYGRCGH+CC+YAGEVVE
Sbjct: 80  GGGHDRGYG----GGRGGY-GRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVE 138

[Close]

BLAST of Lsi11G013840.1 vs. NCBI nr
Match: gi|525507336|ref|NP_001267708.1| (glycine-rich protein-like precursor [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 5.0e-33
Identity = 98/124 (79.03%), Postives = 104/124 (83.87%), Query Frame = 1


Query: 1   MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY--GGYDRGY 60
           MSSK F+F+GLLLAFVLL SSEV ARDLAETSS+ +NEATVE NGVEDAKY  GGYDRGY
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  GGGRG-GYGHGGYGGRGGYGGRGGYGGRGGYGGGHGG---GCRYGRCGHRCCNYAGEVVE 119
           GGG   GYG    GGRGGY GRG YGGRGGYGGG GG   GCRYGRCGH+CC+YAGEVVE
Sbjct: 61  GGGHDRGYG----GGRGGY-GRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVE 119

[Close]

BLAST of Lsi11G013840.1 vs. NCBI nr
Match: gi|704849882|emb|CEG62450.1| (Glycine rich protein [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-32
Identity = 97/124 (78.23%), Postives = 103/124 (83.06%), Query Frame = 1


Query: 1   MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY--GGYDRGY 60
           MSSK F+F+GL LAFVLL SSEV ARDLAETSS+ +NEATVE NGVEDAKY  GGYDRGY
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  GGGRG-GYGHGGYGGRGGYGGRGGYGGRGGYGGGHGG---GCRYGRCGHRCCNYAGEVVE 119
           GGG   GYG    GGRGGY GRG YGGRGGYGGG GG   GCRYGRCGH+CC+YAGEVVE
Sbjct: 61  GGGHDRGYG----GGRGGY-GRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVE 119

[Close]

BLAST of Lsi11G013840.1 vs. NCBI nr
Match: gi|700188222|gb|KGN43455.1| (Cell wall glycine-rich protein [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 7.5e-29
Identity = 98/160 (61.25%), Postives = 104/160 (65.00%), Query Frame = 1


Query: 1   MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYG--GYDRGY 60
           MSSK F+F+GLLLAFVLL SSEV ARDLAETSS+ +NE TVE NGVEDAKYG  GYDRGY
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEVTVETNGVEDAKYGRGGYDRGY 60

Query: 61  GGGR-------------------------------------GGYGHGGYGGRGGYGGRGG 119
           GGG                                      GGY  G  GGRGGYG RG 
Sbjct: 61  GGGYDRGYGGGYDRGYGGGYDRGYGGGYDRGYGGGYDRGYGGGYDRGYGGGRGGYG-RGH 120

The following BLAST results are available for this feature:

BLAST of Lsi11G013840.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G013840.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6L7_CUCSA	3.5e-33	79.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037600 PE=4 SV=1	[more]
A0P8W6_CUCSA	3.5e-33	79.03	Cell wall glycine-rich protein OS=Cucumis sativus GN=CsGRP1 PE=2 SV=1	[more]
A0A0A1IXP4_CUCSA	1.0e-32	78.23	Glycine rich protein OS=Cucumis sativus GN=GRP PE=2 SV=1	[more]
A0A0A0K1B1_CUCSA	5.2e-29	61.25	Cell wall glycine-rich protein OS=Cucumis sativus GN=Csa_7G037590 PE=4 SV=1	[more]
Q9MBF4_CITUN	4.6e-17	60.16	Glycine-rich protein OS=Citrus unshiu PE=4 SV=1	[more]

BLAST of Lsi11G013840.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G05540.1	9.1e-09	48.48	Glycine-rich protein family	[more]

BLAST of Lsi11G013840.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110968\|ref\|XP_008455506.1\|	9.1e-35	81.97	PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo]	[more]
gi\|700188223\|gb\|KGN43456.1\|	5.0e-33	79.03	hypothetical protein Csa_7G037600 [Cucumis sativus]	[more]
gi\|525507336\|ref\|NP_001267708.1\|	5.0e-33	79.03	glycine-rich protein-like precursor [Cucumis sativus]	[more]
gi\|704849882\|emb\|CEG62450.1\|	1.5e-32	78.23	Glycine rich protein [Cucumis sativus]	[more]
gi\|700188222\|gb\|KGN43455.1\|	7.5e-29	61.25	Cell wall glycine-rich protein [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010800	GRP

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi11G013840	Lsi11G013840	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G013840.1.three_prime_UTR.1	Lsi11G013840.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G013840.1.CDS.2	Lsi11G013840.1.CDS.2	CDS
Lsi11G013840.1.CDS.1	Lsi11G013840.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G013840.1.five_prime_UTR.1	Lsi11G013840.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi11G013840.1	Lsi11G013840.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..96 score: 2.9
None	No IPR available	PANTHER	PTHR33980	FAMILY NOT NAMED	coord: 1..108 score: 1.6