Lsi11G012290.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATGTAGACAAAAATACCAAATATTGAAAAATAGTAGAGGTATCAAACAGATATATCTGAATATAAAAAATGAACACTTCGATGAGTTTTTAGTACCATTGCCTTGATTTATCTCAAAGTTATTAGTTAATAGAGAGTATTTGTTACTGTTAAAAGAAAATTCTTTTTCTGCTATTTTTCTTTGTTTGGTCTTTTTTCTGTTATTTTCTTTTTTCTGTTATTTTCTTTTGTTTGATTTATAGTCTATTTATTCTTTATTTCATTGTATTCTGTTTAAACTAATTATTCAATATGATATACAAAACTCACCGTTACTAAGGTAAATGATTTAGGGTAACTTTTCTTACTTTGTTACCATCATGTGGTATTTTCCCCTCTTATATATGCAATCACTTTGTCAAATAACCCAGGGATAGCTAATACTCATAAACAATAGTAAAATTATCGATTTATACACCTCACTGTTGGAGGTAACATTAATTAAATTACTAAACTAATAATTGTAACAATTTTAATATTGAAATTTACAAGTGTCAATTTATAACATTCCTTCAATTTTGTATGAAAAAAATATTGTGTGAATCAAATTAAGACTTTCTTCATGATTACCTTAAAAAAATCGGTCATTCATGCATTAATTCTCACACGTATGCAGATTTTTTCAAATGTTAGTTTTACAAAATGGACCATTAGAATTGAAGCATGGATGATTCTTAAATAAATACTAAATGAGAGTCTAAATTGTCACACTTAAAAAGTTTTAGAGTCAATTATAAGTCTCCCATGATAGTTTTTAAACGAAACATAATGAAGGGTGTAAATTGATACACTCACAAAGTTTGAATTTAAATTGATACCATTATTAAAGTCCGTATCAATTTATATATGCTCCCAACTATACGAAAACTCATGTTATACAAATGTCAAGAATCTTTATTATGAAAAAATAGAATATAATAACATCATAAATATGTAGAAGAGTAGAAAAGTTTAAACAAGGGTAGAATTGTAAGAAAAATGATGCAGAACATTTGACCCATAGATTATTTGACACAATATTTTTTAAGTGATTTTTTAGAGTGATTGTGATGAATAACAATTTTAGAGATAATAATTAAGTGTATAATATTTTTTAAAAATTACAAATATAGCAAAGTCTAGACTTTGCTATATTTATAATTATTTAAAATATTATATATGTTAATACTCTAAATTTGATAGCTATATTAACAACTAATCGGGCCTAAGCCCAACCATCGTGGCCCGTGGGCTTCAACTTCCTTAGAAGCCCAATCCCTCATTCGTCTCCCCCATTTGTCCCCTCGTCCCGCGTTTCGGCAGCCATTTTTTCTTCAGCACAGCCATGGCGTCCTTTAGCTTCGGCTCCCTGCTGATTCTCTCAGCGATCTTCAGGTTGGTACTCATACTATACGGCGAGTGGCAGGATGCGAACATGGAGGTCAGATACACTGATGTCGATTACATCGTATTCTCAGACGCTGCTTCTCTAATGGCGTCCGGAAAGTCCCCCTACCTGAGATCCACTTACAGATACTCGCCATTGCTGGCGTTTTTGCTCATACCGAACTCTATCTTCCATCGCTGCTGGGGAAAATTTCTATTCTCAGCATCAGGTACCTTCACCTTTTCATTCGATTTGTTGAATTATAGTTTTCTGTTGGTTTCTGAATCAGTTGTCCTGATTCCGTTTAGATTTGCTCGTCGGATTCTTTATACGTACTATTTTGAAGAAACGTGGCGTTCCAGAAAATTTGTGCATCGGTTCTGTCATGGTTTGGCTTTTTAACCCGTTTACGTTTACCATTGGCACCAGAGGAAACTGCGAGCCTCTAGTTTGTGCAATGGTTCTTAAGATCCTTTTGTGTCTGATGAACGGTGTAAGTTTCTTTTCTCTCTCAATTTACAATCGGAACTTTGTCAATTCGCTGAAGTTGTTAAAATTAATTATGCAAATTTGTAGATTGGAAGAACAGGTGGTCCAAAATTAACTTGTTTGCATTGATATTGGGAGCTAATTCATTAGATGTAGCTGGAACTTGCATACTTCACAATATTCATATTTCGAAGTAATCTGCTGTTGTTAATATCCCATGTAAATGTAATATAACTTCACAACATAACCAATACCTTTGTTATTTAGTAGCAACCTGAGCATAGCTAAGGCAAAACATATACTATTGACCAAGAGGTCGGAGGTTCATGTTCTCCTCCAACATTGTTGAATTAAAATCAGAAAAAAACATACTTTGCTGATGTAGGAAAACTTGTGTCCTTGTTTGGATTCTTTTATTTTGCATCTTTTCTTGAGAGGATTCTTGTCTGTTCTTTAGTTCTTGAAGATCATCTTTGTTTATTAGCTAGAAGTTACTCTTTGGTAACCTTAGCTTTATTAGTTTGCTGTCCAGCCGGCTGTTAGACTTTGTGTCACCGGTTACTGGTTTCCAGCCAGCCTTAGTTTATGAATAGGTGGCTGCTTGTATTCAAAGCGCATTCGTTTTTGACAGAATCAGTAAGAATTACTCCCCACTTTGTTTACGTCATTTGCCATTTAGTACATAATTGATGTAAATATGCAGTAGCCTAGAAAATTTCCTGTTTAGATCGTGGGATGCAACTGTTTGTCGGGATATTTGTGCATTTGTTGGTAGATTACCCACTTGTAGTTTAGTATAACTCTCTTTCCCTGTAACAGGTCAGTTGCTACAAGCTGCATTTTGGTATGGACTTGTCGTCCATTTTAGAATATATCCAATCATCTATGCCCTTCCAATTCTTCTGATTCTCAACCAGAATGTATTCAAATCTGGTCTGAATCCCGCTCTTCAAAAATGGAGCCAGGGTGATGAAAAGGCTCCTCAGAGCAATTTACCATCGAGGTTGGCTCATATTTTTAGTCCATGGTTTCTATTGAAATCCATAATGACTAAGGAGAGAATAATTTTTGGCCTCATTTCTGGTTCGATTTTCATCTTCTGCACTGCACTGTTTTATTATCTATATGGTTGGGAATTCCTGCATGAGGCGCTGCTCTATCATCTTACACGTACTGACCCAAGGCACAATTTCTCAATCTATTTTTATCACATCTATCTTCACCATGAACACAAGTTCTCGGTTGTGGAGAAGCTCATTTCATTTCTGCCCCAGTTGGTAGTGCAGCTTGTTCTCGTTTTATCGTTTGCTCAAGATCTTCCATTCTGCTGGTTTGCACAGACAGTAGCATTTGTGGCATTCAACAAGGTTTGTTCTCGTTTTATAGATAAGAGTTGAGATTTCTGTCAAAACATGTTTTTTCCCCATCGAGTTTATTGAACTTGGGATCTACTAGTACTCATTCTCCCTGATCATTGTCTGAATGCTTATGAAGTTCTCTGAGAAACTCTTCATATTTGATCAAACAGGTGATCACAGCACAATATTTTGTCTGGTTCTTCTGTCTTCTACCCTTGATTCTTCCTTGGAGTAAGATGAAGCTCAAATGGAAAGGTGTGTTATCAGTATCGATCTGGACGGGAGCACAGCTTCATTGGCTGATGTGGGGTTATTTGCTGGAGTTCAAGGGAAAGAATGTGTTGATTCAACTGTGGATGGCAAGCATCTTGTTCTTGGCTGCAAACACAGCCGTTTTGAGCTTAATCATCCACCAACACAAGCTCTCTGCTCTTTTCATGCTACCCGAAACCACAGCTGGCACTACAAATAAATCCAAGAAATCCAACTGATGCATTATACATTAGGCCGCTCCGCTTCGTCTTGGAGACGTGGCTAACGCGGAGCAGCCTATTATATATGTATTTTATGAGTTGAATGATAGATCTAATTATGTAATTGTTAACAACTCTCTTTGTTGTTGATTTCCTTTTTTTTTTTTTTTTGCCCCTTCCTTCTTGTAGCAGGGTTCTTTTTTGAAACGATTTTTCTCATTTTATTATTACAAGTTTGAGGACATGTACGTCATCTTTAG ATGGAAATCACAGCCATGGCGTCCTTTAGCTTCGGCTCCCTGCTGATTCTCTCAGCGATCTTCAGGTTGGTACTCATACTATACGGCGAGTGGCAGGATGCGAACATGGAGGTCAGATACACTGATGTCGATTACATCGTATTCTCAGACGCTGCTTCTCTAATGGCGTCCGGAAAGTCCCCCTACCTGAGATCCACTTACAGATACTCGCCATTGCTGGCGTTTTTGCTCATACCGAACTCTATCTTCCATCGCTGCTGGGGAAAATTTCTATTCTCAGCATCAGATTTGCTCGTCGGATTCTTTATACGTACTATTTTGAAGAAACGTGGCGTTCCAGAAAATTTGTGCATCGGTTCTGTCATGGTTTGGCTTTTTAACCCGTTTACGTTTACCATTGGCACCAGAGGAAACTGCGAGCCTCTAGTTTGTGCAATGGTTCTTAAGATCCTTTTGTGTCTGATGAACGATTGGAAGAACAGGTGGTCCAAAATTAACTTGTTTGCATTGATATTGGGAGCTAATTCATTAGATGTAGCTGGAACTTGCATACTTCACAATATTCATATTTCGAATAGCCTAGAAAATTTCCTGTTTAGATCGTGGGATGCAACTGTTTGTCGGGATATTTGTGCATTTGTTGGTCAGTTGCTACAAGCTGCATTTTGGTATGGACTTGTCGTCCATTTTAGAATATATCCAATCATCTATGCCCTTCCAATTCTTCTGATTCTCAACCAGAATGTATTCAAATCTGGTCTGAATCCCGCTCTTCAAAAATGGAGCCAGGGTGATGAAAAGGCTCCTCAGAGCAATTTACCATCGAGGTTGGCTCATATTTTTAGTCCATGGTTTCTATTGAAATCCATAATGACTAAGGAGAGAATAATTTTTGGCCTCATTTCTGGTTCGATTTTCATCTTCTGCACTGCACTGTTTTATTATCTATATGGTTGGGAATTCCTGCATGAGGCGCTGCTCTATCATCTTACACGTACTGACCCAAGGCACAATTTCTCAATCTATTTTTATCACATCTATCTTCACCATGAACACAAGTTCTCGGTTGTGGAGAAGCTCATTTCATTTCTGCCCCAGTTGGTAGTGCAGCTTGTTCTCGTTTTATCGTTTGCTCAAGATCTTCCATTCTGCTGGTTTGCACAGACAGTAGCATTTGTGGCATTCAACAAGGTGATCACAGCACAATATTTTGTCTGGTTCTTCTGTCTTCTACCCTTGATTCTTCCTTGGAGTAAGATGAAGCTCAAATGGAAAGGTGTGTTATCAGTATCGATCTGGACGGGAGCACAGCTTCATTGGCTGATGTGGGGTTATTTGCTGGAGTTCAAGGGAAAGAATGTGTTGATTCAACTGTGGATGGCAAGCATCTTGTTCTTGGCTGCAAACACAGCCGTTTTGAGCTTAATCATCCACCAACACAAGCTCTCTGCTCTTTTCATGCTACCCGAAACCACAGCTGGCACTACAAATAAATCCAAGAAATCCAACTGATGCATTATACATTAGGCCGCTCCGCTTCGTCTTGGAGACGTGGCTAACGCGGAGCAGCCTATTATATATGTATTTTATGAGTTGAATGATAGATCTAATTATGTAATTGTTAACAACTCTCTTTGTTGTTGATTTCCTTTTTTTTTTTTTTTTGCCCCTTCCTTCTTGTAGCAGGGTTCTTTTTTGAAACGATTTTTCTCATTTTATTATTACAAGTTTGAGGACATGTACGTCATCTTTAG ATGGAAATCACAGCCATGGCGTCCTTTAGCTTCGGCTCCCTGCTGATTCTCTCAGCGATCTTCAGGTTGGTACTCATACTATACGGCGAGTGGCAGGATGCGAACATGGAGGTCAGATACACTGATGTCGATTACATCGTATTCTCAGACGCTGCTTCTCTAATGGCGTCCGGAAAGTCCCCCTACCTGAGATCCACTTACAGATACTCGCCATTGCTGGCGTTTTTGCTCATACCGAACTCTATCTTCCATCGCTGCTGGGGAAAATTTCTATTCTCAGCATCAGATTTGCTCGTCGGATTCTTTATACGTACTATTTTGAAGAAACGTGGCGTTCCAGAAAATTTGTGCATCGGTTCTGTCATGGTTTGGCTTTTTAACCCGTTTACGTTTACCATTGGCACCAGAGGAAACTGCGAGCCTCTAGTTTGTGCAATGGTTCTTAAGATCCTTTTGTGTCTGATGAACGATTGGAAGAACAGGTGGTCCAAAATTAACTTGTTTGCATTGATATTGGGAGCTAATTCATTAGATGTAGCTGGAACTTGCATACTTCACAATATTCATATTTCGAATAGCCTAGAAAATTTCCTGTTTAGATCGTGGGATGCAACTGTTTGTCGGGATATTTGTGCATTTGTTGGTCAGTTGCTACAAGCTGCATTTTGGTATGGACTTGTCGTCCATTTTAGAATATATCCAATCATCTATGCCCTTCCAATTCTTCTGATTCTCAACCAGAATGTATTCAAATCTGGTCTGAATCCCGCTCTTCAAAAATGGAGCCAGGGTGATGAAAAGGCTCCTCAGAGCAATTTACCATCGAGGTTGGCTCATATTTTTAGTCCATGGTTTCTATTGAAATCCATAATGACTAAGGAGAGAATAATTTTTGGCCTCATTTCTGGTTCGATTTTCATCTTCTGCACTGCACTGTTTTATTATCTATATGGTTGGGAATTCCTGCATGAGGCGCTGCTCTATCATCTTACACGTACTGACCCAAGGCACAATTTCTCAATCTATTTTTATCACATCTATCTTCACCATGAACACAAGTTCTCGGTTGTGGAGAAGCTCATTTCATTTCTGCCCCAGTTGGTAGTGCAGCTTGTTCTCGTTTTATCGTTTGCTCAAGATCTTCCATTCTGCTGGTTTGCACAGACAGTAGCATTTGTGGCATTCAACAAGGTGATCACAGCACAATATTTTGTCTGGTTCTTCTGTCTTCTACCCTTGATTCTTCCTTGGAGTAAGATGAAGCTCAAATGGAAAGGTGTGTTATCAGTATCGATCTGGACGGGAGCACAGCTTCATTGGCTGATGTGGGGTTATTTGCTGGAGTTCAAGGGAAAGAATGTGTTGATTCAACTGTGGATGGCAAGCATCTTGTTCTTGGCTGCAAACACAGCCGTTTTGAGCTTAATCATCCACCAACACAAGCTCTCTGCTCTTTTCATGCTACCCGAAACCACAGCTGGCACTACAAATAAATCCAAGAAATCCAACTGA MEITAMASFSFGSLLILSAIFRLVLILYGEWQDANMEVRYTDVDYIVFSDAASLMASGKSPYLRSTYRYSPLLAFLLIPNSIFHRCWGKFLFSASDLLVGFFIRTILKKRGVPENLCIGSVMVWLFNPFTFTIGTRGNCEPLVCAMVLKILLCLMNDWKNRWSKINLFALILGANSLDVAGTCILHNIHISNSLENFLFRSWDATVCRDICAFVGQLLQAAFWYGLVVHFRIYPIIYALPILLILNQNVFKSGLNPALQKWSQGDEKAPQSNLPSRLAHIFSPWFLLKSIMTKERIIFGLISGSIFIFCTALFYYLYGWEFLHEALLYHLTRTDPRHNFSIYFYHIYLHHEHKFSVVEKLISFLPQLVVQLVLVLSFAQDLPFCWFAQTVAFVAFNKVITAQYFVWFFCLLPLILPWSKMKLKWKGVLSVSIWTGAQLHWLMWGYLLEFKGKNVLIQLWMASILFLAANTAVLSLIIHQHKLSALFMLPETTAGTTNKSKKSN
BLAST of Lsi11G012290.1 vs. Swiss-Prot
Match: PIGM_ARATH (GPI mannosyltransferase 1 OS=Arabidopsis thaliana GN=PIGM PE=2 SV=1) HSP 1 Score: 380.2 bits (975), Expect = 3.6e-104 Identity = 189/292 (64.73%), Postives = 228/292 (78.08%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. Swiss-Prot
Match: PIGM_CHICK (GPI mannosyltransferase 1 OS=Gallus gallus GN=PIGM PE=2 SV=2) HSP 1 Score: 199.1 bits (505), Expect = 1.1e-49 Identity = 116/268 (43.28%), Postives = 161/268 (60.07%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. Swiss-Prot
Match: PIGM_XENTR (GPI mannosyltransferase 1 OS=Xenopus tropicalis GN=pigm PE=2 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 1.9e-49 Identity = 113/269 (42.01%), Postives = 161/269 (59.85%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. Swiss-Prot
Match: PIGM_MACFA (GPI mannosyltransferase 1 OS=Macaca fascicularis GN=PIGM PE=2 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 2.3e-42 Identity = 102/262 (38.93%), Postives = 152/262 (58.02%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. Swiss-Prot
Match: PIGM_PONAB (GPI mannosyltransferase 1 OS=Pongo abelii GN=PIGM PE=2 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 3.3e-41 Identity = 103/262 (39.31%), Postives = 144/262 (54.96%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. TrEMBL
Match: A0A0A0K625_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G017690 PE=4 SV=1) HSP 1 Score: 535.8 bits (1379), Expect = 5.6e-149 Identity = 268/292 (91.78%), Postives = 276/292 (94.52%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. TrEMBL
Match: M8AHR8_TRIUA (GPI mannosyltransferase 1 OS=Triticum urartu GN=TRIUR3_17180 PE=4 SV=1) HSP 1 Score: 422.5 bits (1085), Expect = 7.0e-115 Identity = 216/397 (54.41%), Postives = 276/397 (69.52%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. TrEMBL
Match: W9S4J7_9ROSA (GPI mannosyltransferase 1 OS=Morus notabilis GN=L484_009822 PE=4 SV=1) HSP 1 Score: 415.6 bits (1067), Expect = 8.5e-113 Identity = 202/293 (68.94%), Postives = 245/293 (83.62%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. TrEMBL
Match: M5VM31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005934mg PE=4 SV=1) HSP 1 Score: 400.6 bits (1028), Expect = 2.8e-108 Identity = 197/284 (69.37%), Postives = 232/284 (81.69%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. TrEMBL
Match: A0A067DZE4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012470mg PE=4 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 1.1e-107 Identity = 192/277 (69.31%), Postives = 229/277 (82.67%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. TAIR10
Match: AT5G22130.2 (AT5G22130.2 mannosyltransferase family protein) HSP 1 Score: 380.2 bits (975), Expect = 2.0e-105 Identity = 189/292 (64.73%), Postives = 228/292 (78.08%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. NCBI nr
Match: gi|659094144|ref|XP_008447908.1| (PREDICTED: GPI mannosyltransferase 1 isoform X1 [Cucumis melo]) HSP 1 Score: 545.0 bits (1403), Expect = 1.3e-151 Identity = 273/294 (92.86%), Postives = 281/294 (95.58%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. NCBI nr
Match: gi|449454251|ref|XP_004144869.1| (PREDICTED: GPI mannosyltransferase 1 isoform X1 [Cucumis sativus]) HSP 1 Score: 535.8 bits (1379), Expect = 8.1e-149 Identity = 268/292 (91.78%), Postives = 276/292 (94.52%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. NCBI nr
Match: gi|474379703|gb|EMS64470.1| (GPI mannosyltransferase 1 [Triticum urartu]) HSP 1 Score: 422.5 bits (1085), Expect = 1.0e-114 Identity = 216/397 (54.41%), Postives = 276/397 (69.52%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. NCBI nr
Match: gi|703151804|ref|XP_010110216.1| (GPI mannosyltransferase 1 [Morus notabilis]) HSP 1 Score: 415.6 bits (1067), Expect = 1.2e-112 Identity = 202/293 (68.94%), Postives = 245/293 (83.62%), Query Frame = 1
BLAST of Lsi11G012290.1 vs. NCBI nr
Match: gi|1009133084|ref|XP_015883714.1| (PREDICTED: GPI mannosyltransferase 1 [Ziziphus jujuba]) HSP 1 Score: 409.8 bits (1052), Expect = 6.7e-111 Identity = 202/289 (69.90%), Postives = 231/289 (79.93%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
|