Lsi10G009550.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G009550.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description50S ribosomal protein L11
Locationchr10 : 13923875 .. 13924342 (+)
Sequence length468
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCTTGAAAGAGATTCTAACCAGACGACCCGTCGCTGCCACTATCAGGCTTACCGTCCCTGCCGGTGCAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGCTGGGTCAATACCGGCTAAATCTGATGGCCTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGGCTGACACCCCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAATCACCGTCAGTCACTTGGTACCTGAAGAAAGCTGCCGGGATCGAATCTGGGAGCAGCCGCCCAGGCCATGTAGTCGCCTCCACGCTTTCAGTCAAGCACATTTATGAGATCGCCAAAGTCAAGCAATCCGATCCTTATTGCCAGTACATGTCACTCGAATGCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTAGTTAAGGAATTGGAGTAA

mRNA sequence

ATGGCCACCTTGAAAGAGATTCTAACCAGACGACCCGTCGCTGCCACTATCAGGCTTACCGTCCCTGCCGGTGCAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGCTGGGTCAATACCGGCTAAATCTGATGGCCTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGGCTGACACCCCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAATCACCGTCAGTCACTTGGTACCTGAAGAAAGCTGCCGGGATCGAATCTGGGAGCAGCCGCCCAGGCCATGTAGTCGCCTCCACGCTTTCAGTCAAGCACATTTATGAGATCGCCAAAGTCAAGCAATCCGATCCTTATTGCCAGTACATGTCACTCGAATGCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTAGTTAAGGAATTGGAGTAA

Coding sequence (CDS)

ATGGCCACCTTGAAAGAGATTCTAACCAGACGACCCGTCGCTGCCACTATCAGGCTTACCGTCCCTGCCGGTGCAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGCTGGGTCAATACCGGCTAAATCTGATGGCCTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGGCTGACACCCCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAATCACCGTCAGTCACTTGGTACCTGAAGAAAGCTGCCGGGATCGAATCTGGGAGCAGCCGCCCAGGCCATGTAGTCGCCTCCACGCTTTCAGTCAAGCACATTTATGAGATCGCCAAAGTCAAGCAATCCGATCCTTATTGCCAGTACATGTCACTCGAATGCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTAGTTAAGGAATTGGAGTAA

Protein sequence

MATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYMSLECICKSIIGTANSMGIKVVKELE
Homology
[Close]
BLAST of Lsi10G009550.1 vs. Swiss-Prot
Match: RM19_SCHPO (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.6e-33
Identity = 69/135 (51.11%), Postives = 89/135 (65.93%), Query Frame = 1 

Query: 17  IRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+FNART  +  +TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYMSLECIC 136
           FT+ +P  +W + K   +E GSS P H +   LS+KHIYEIAK+K +DP  Q + L  +C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

Query: 137 KSIIGTANSMGIKVV 152
           KS+IGTA SMG+KVV
Sbjct: 129 KSVIGTAKSMGVKVV 143

[Close]
BLAST of Lsi10G009550.1 vs. Swiss-Prot
Match: RL11_RHOP5 (50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplK PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.4e-29
Identity = 66/140 (47.14%), Postives = 96/140 (68.57%), Query Frame = 1 

Query: 11  RPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAF 70
           + V   ++L VPAGAA P+PP+GPALGQ  LN+M FCK+FNA+TQK + +TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKNFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P ++++LK+AA I+SGS  PG  VA  +S   + EIA+ K  D  C   
Sbjct: 63  ADRSFTFEMKTPPMSFFLKQAAKIQSGSKLPGRDVAGKVSSAQVREIAERKMKDLNCD-- 122

Query: 131 SLECICKSIIGTANSMGIKV 151
           S+E   + + G+A SMG++V
Sbjct: 123 SIESAMRMVEGSARSMGLQV 140

[Close]
BLAST of Lsi10G009550.1 vs. Swiss-Prot
Match: RL11_PARL1 (50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplK PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.4e-29
Identity = 68/142 (47.89%), Postives = 92/142 (64.79%), Query Frame = 1 

Query: 11  RPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAF 70
           + +   I+L VPAGAA P+PP+GPALGQ  LN+M FCK FNA TQK +   P+ V ITAF
Sbjct: 3   KKIEGYIKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAATQKMEQGMPIPVVITAF 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +++LKKAA + SGS  PG   A T++V    EIA+ K +D      
Sbjct: 63  SDRSFTFAMKTPPASYFLKKAAKVTSGSKTPGRASAGTVTVAQCREIAEAKMAD--LNAN 122

Query: 131 SLECICKSIIGTANSMGIKVVK 153
            L+   K I G+A SMG++VV+
Sbjct: 123 DLDQATKIIAGSARSMGLQVVE 142

[Close]
BLAST of Lsi10G009550.1 vs. Swiss-Prot
Match: RL11_RHOPB (50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplK PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.8e-29
Identity = 65/140 (46.43%), Postives = 95/140 (67.86%), Query Frame = 1 

Query: 11  RPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAF 70
           + V   ++L VPAGAA P+PP+GPALGQ  LN+M FCK FNA+TQK + +TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P ++++LK+AA ++SGS  PG  VA  ++   + EIA+ K  D  C   
Sbjct: 63  ADRSFTFEMKTPPMSFFLKQAANVKSGSKLPGRDVAGKVTSAQVREIAERKMKDLNCD-- 122

Query: 131 SLECICKSIIGTANSMGIKV 151
           S+E   K + G+A SMG++V
Sbjct: 123 SIEAAMKMVEGSARSMGLQV 140

[Close]
BLAST of Lsi10G009550.1 vs. Swiss-Prot
Match: RL11_NITWN (50S ribosomal protein L11 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplK PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.8e-29
Identity = 65/142 (45.77%), Postives = 94/142 (66.20%), Query Frame = 1 

Query: 11  RPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAF 70
           + V   ++L VPAGAA P+PP+GPALGQ  LN+M FCK FNA+TQK + +TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P + ++LK+AA I+SGS  PG   A TL+   + EIA+ K  D  C   
Sbjct: 63  ADRSFTFEMKTPPMAYFLKQAAKIQSGSKTPGRDAAGTLTRAQVREIAEKKMKDLNCD-- 122

Query: 131 SLECICKSIIGTANSMGIKVVK 153
           ++E     + G+A SMG++V +
Sbjct: 123 TVEAAMSMVEGSARSMGLQVAE 142

[Close]
BLAST of Lsi10G009550.1 vs. TrEMBL
Match: A0A0A0KWT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279840 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.2e-76
Identity = 148/155 (95.48%), Postives = 150/155 (96.77%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAG ARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK +
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMSLECICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYM LE ICKSIIGTANSMGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Lsi10G009550.1 vs. TrEMBL
Match: A0A0D2NBV6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G199600 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.4e-76
Identity = 144/155 (92.90%), Postives = 152/155 (98.06%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           M+TLKEILTRRPVAATIRLTVPAG ARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TLSV+HIYEIAK+
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVRHIYEIAKI 120

Query: 121 KQSDPYCQYMSLECICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMSLE ICKSIIGTAN+MGIKVVK+L+
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVKDLD 155

[Close]
BLAST of Lsi10G009550.1 vs. TrEMBL
Match: A0A067JZZ8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19264 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-75
Identity = 145/155 (93.55%), Postives = 152/155 (98.06%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           M+TLKEILTRRPVAATIRLTVPAG ARP+PPVGPALGQYRLNLMAFCKDFNARTQKYKAD
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPSPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVAST+++KHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTVTLKHIYEIAKV 120

Query: 121 KQSDPYCQYMSLECICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMSLE I KSIIGTANSMGIKVVK+L+
Sbjct: 121 KQSDPYCQYMSLESISKSIIGTANSMGIKVVKDLD 155

[Close]
BLAST of Lsi10G009550.1 vs. TrEMBL
Match: A0A061DFE6_THECC (Mitochondrial ribosomal protein L11 OS=Theobroma cacao GN=TCM_000052 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.2e-75
Identity = 143/155 (92.26%), Postives = 150/155 (96.77%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           M+TLKEILTRRPVAATIRLTVPAG ARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEF VKSPSVTWYLKKAAGIESGSSRPGHV+A+TLSV+HIYEIAK+
Sbjct: 61  TPMAVTITAFKDNTFEFIVKSPSVTWYLKKAAGIESGSSRPGHVIATTLSVRHIYEIAKI 120

Query: 121 KQSDPYCQYMSLECICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMSLE ICKSIIGTAN+MGIKVV EL+
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVNELD 155

[Close]
BLAST of Lsi10G009550.1 vs. TrEMBL
Match: B9S6W1_RICCO (50S robosomal protein L11, putative OS=Ricinus communis GN=RCOM_0874950 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.7e-75
Identity = 143/155 (92.26%), Postives = 151/155 (97.42%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAG ARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVAST+++KH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTVTLKHVYEIAKV 120

Query: 121 KQSDPYCQYMSLECICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMSLE I KS+IGTAN+MGIKVVK+L+
Sbjct: 121 KQSDPYCQYMSLESISKSVIGTANAMGIKVVKDLD 155

[Close]
BLAST of Lsi10G009550.1 vs. TAIR10
Match: AT4G35490.1 (AT4G35490.1 mitochondrial ribosomal protein L11)

HSP 1 Score: 263.5 bits (672), Expect = 8.4e-71
Identity = 128/154 (83.12%), Postives = 144/154 (93.51%), Query Frame = 1 

Query: 2   ATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADT 61
           A  KEIL RRPVAATIRLTVPAG ARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK DT
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVK 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS+RPGH+  +TLSV+H+YEIAKVK
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPYCQYMSLECICKSIIGTANSMGIKVVKELE 156
           Q+DP+CQYM LE ICKSIIGTANSMGIK+V++LE
Sbjct: 123 QTDPFCQYMPLESICKSIIGTANSMGIKIVQDLE 155

[Close]
BLAST of Lsi10G009550.1 vs. TAIR10
Match: AT1G32990.1 (AT1G32990.1 plastid ribosomal protein l11)

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-22
Identity = 60/140 (42.86%), Postives = 81/140 (57.86%), Query Frame = 1 

Query: 11  RPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   KA   + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +  L KAAG+E GS  P       +++  +  IA  K  D  C   
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC--T 191

Query: 131 SLECICKSIIGTANSMGIKV 151
           ++E   + I GTA +MGI +
Sbjct: 192 TIESAMRIIAGTAANMGIDI 208

[Close]
BLAST of Lsi10G009550.1 vs. TAIR10
Match: AT5G51610.1 (AT5G51610.1 Ribosomal protein L11 family protein)

HSP 1 Score: 50.8 bits (120), Expect = 8.6e-07
Identity = 25/79 (31.65%), Postives = 46/79 (58.23%), Query Frame = 1 

Query: 72  DNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYMS 131
           D +F F +K+P  ++ L KAAG++ GS  P  +    +++  + +IA+VK  +  C   +
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC--TT 151

Query: 132 LECICKSIIGTANSMGIKV 151
           +    ++I GTA +MGI +
Sbjct: 152 IVSTMRTIAGTAGNMGIDI 168

[Close]
BLAST of Lsi10G009550.1 vs. NCBI nr
Match: gi|659097841|ref|XP_008449842.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 1.3e-76
Identity = 148/155 (95.48%), Postives = 150/155 (96.77%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPV+ATIRLTVPAG ARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMSLECICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYM LE ICKSIIGTANSMGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Lsi10G009550.1 vs. NCBI nr
Match: gi|449448846|ref|XP_004142176.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 1.7e-76
Identity = 148/155 (95.48%), Postives = 150/155 (96.77%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAG ARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK +
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMSLECICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYM LE ICKSIIGTANSMGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Lsi10G009550.1 vs. NCBI nr
Match: gi|823126060|ref|XP_012487400.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Gossypium raimondii])

HSP 1 Score: 292.0 bits (746), Expect = 6.3e-76
Identity = 144/155 (92.90%), Postives = 152/155 (98.06%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           M+TLKEILTRRPVAATIRLTVPAG ARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPM+VTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TLSV+HIYEIAK+
Sbjct: 61  TPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVRHIYEIAKI 120

Query: 121 KQSDPYCQYMSLECICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMSLE ICKSIIGTAN+MGIKVVK+L+
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVKDLD 155

[Close]
BLAST of Lsi10G009550.1 vs. NCBI nr
Match: gi|1009144058|ref|XP_015889592.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-75
Identity = 145/155 (93.55%), Postives = 151/155 (97.42%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPV+ATIRLTVPAG ARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAV ITA+KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLS+KHIYEIAKV
Sbjct: 61  TPMAVMITAYKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMSLECICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMSLE ICKSIIGTAN+MGIKVVK+L+
Sbjct: 121 KQSDPYCQYMSLESICKSIIGTANTMGIKVVKDLD 155

[Close]
BLAST of Lsi10G009550.1 vs. NCBI nr
Match: gi|802676760|ref|XP_012081919.1| (PREDICTED: 54S ribosomal protein L19, mitochondrial [Jatropha curcas])

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-75
Identity = 145/155 (93.55%), Postives = 152/155 (98.06%), Query Frame = 1 

Query: 1   MATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           M+TLKEILTRRPVAATIRLTVPAG ARP+PPVGPALGQYRLNLMAFCKDFNARTQKYKAD
Sbjct: 1   MSTLKEILTRRPVAATIRLTVPAGGARPSPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVAST+++KHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTVTLKHIYEIAKV 120

Query: 121 KQSDPYCQYMSLECICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMSLE I KSIIGTANSMGIKVVK+L+
Sbjct: 121 KQSDPYCQYMSLESISKSIIGTANSMGIKVVKDLD 155

The following BLAST results are available for this feature:
BLAST of Lsi10G009550.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RM19_SCHPO6.6e-3351.1154S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
RL11_RHOP53.4e-2947.1450S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplK ... [more]
RL11_PARL14.4e-2947.8950S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 130... [more]
RL11_RHOPB5.8e-2946.4350S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplK ... [more]
RL11_NITWN9.8e-2945.7750S ribosomal protein L11 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 2539... [more]
BLAST of Lsi10G009550.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWT6_CUCSA1.2e-7695.48Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279840 PE=3 SV=1[more]
A0A0D2NBV6_GOSRA4.4e-7692.90Uncharacterized protein OS=Gossypium raimondii GN=B456_001G199600 PE=3 SV=1[more]
A0A067JZZ8_JATCU1.3e-7593.55Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19264 PE=3 SV=1[more]
A0A061DFE6_THECC2.2e-7592.26Mitochondrial ribosomal protein L11 OS=Theobroma cacao GN=TCM_000052 PE=3 SV=1[more]
B9S6W1_RICCO3.7e-7592.2650S robosomal protein L11, putative OS=Ricinus communis GN=RCOM_0874950 PE=3 SV=... [more]
BLAST of Lsi10G009550.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G35490.18.4e-7183.12 mitochondrial ribosomal protein L11[more]
AT1G32990.11.9e-2242.86 plastid ribosomal protein l11[more]
AT5G51610.18.6e-0731.65 Ribosomal protein L11 family protein[more]
BLAST of Lsi10G009550.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659097841|ref|XP_008449842.1|1.3e-7695.48PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo][more]
gi|449448846|ref|XP_004142176.1|1.7e-7695.48PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis sativus][more]
gi|823126060|ref|XP_012487400.1|6.3e-7692.90PREDICTED: 54S ribosomal protein L19, mitochondrial [Gossypium raimondii][more]
gi|1009144058|ref|XP_015889592.1|1.1e-7593.55PREDICTED: 54S ribosomal protein L19, mitochondrial [Ziziphus jujuba][more]
gi|802676760|ref|XP_012081919.1|1.8e-7593.55PREDICTED: 54S ribosomal protein L19, mitochondrial [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR020784Ribosomal_L11_N
IPR020783Ribosomal_L11_C
IPR006519Ribosomal_L11_bac-typ
IPR000911Ribosomal_L11/L12
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0000027 ribosomal large subunit assembly
cellular_component GO:0005840 ribosome
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi10G009550Lsi10G009550gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi10G009550.1.CDS.1Lsi10G009550.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi10G009550.1Lsi10G009550.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 13..152
score: 25
IPR000911Ribosomal protein L11/L12PANTHERPTHR1166160S RIBOSOMAL PROTEIN L12coord: 5..154
score: 5.2
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 17..151
score: 9.0
IPR006519Ribosomal protein L11, bacterial-typeTIGRFAMsTIGR01632TIGR01632coord: 13..152
score: 2.7
IPR020783Ribosomal protein L11, C-terminalGENE3DG3DSA:1.10.10.250coord: 81..151
score: 3.0
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 80..150
score: 3.2
IPR020783Ribosomal protein L11, C-terminalunknownSSF46906Ribosomal protein L11, C-terminal domaincoord: 76..151
score: 1.44
IPR020784Ribosomal protein L11, N-terminalGENE3DG3DSA:3.30.1550.10coord: 12..80
score: 1.6
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 17..75
score: 6.1
IPR020784Ribosomal protein L11, N-terminalunknownSSF54747Ribosomal L11/L12e N-terminal domaincoord: 13..80
score: 5.23
NoneNo IPR availablePRODOMPD001367coord: 44..82
score: 1.0
NoneNo IPR availablePANTHERPTHR11661:SF139S RIBOSOMAL PROTEIN L11, MITOCHONDRIALcoord: 5..154
score: 5.2