Lsi10G005500.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G005500.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Red chlorophyll catabolite reductase
Location	chr10 : 8060591 .. 8063578 (+)
Sequence length	1263

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATTCCCGCCAAAGCCAAAGAAACCTGACTAAGCAGATATTTTCTCTATCCCTAATCTAATCCAAGTTTTTGTCCGATGCCTAACAAACATTACCCTTCGTACAAAGACAGATGAAGCTTGCTACCAATGGCGTCGATGGTTTATGCATCTGCAAAACCTTTTAGTCTTCCGCCGCCGTTACCGGTACAATCCTGTTTCAGAGCAAGGAAACCGGCGACAGTAATAAGGAGCGCGGCGTCGAACATGGCGGAGGGATCGTCATCGAAGCTGAAGGAGTTTCCGCATCTGTCGAGTTCTCACAGAGCTCTGATGGCCGATCTAATCGGCGCCATTGAAGATCGCTTGGAGGATCGTCTTCTTCCTTGTGCGCTTCCTCCTGATGTTGAGTACTACCAGAATCAGAACGGGACTTCGGAAGGCGCTCTTCTCATCAGATCTGGCTCGCCGGACTCTTCTGTATGTCTCTCTCTCTCTCTCTCCCTTGAAGGAATTTGTGCTCTGATCTGCTTCCGAGTTCCCATTTTAGGGTTTCTGGATTTTGGGGTTTTTGGTTTGAATTCTGTTTTTGCAATTTTTGAACGATGATGAGGGAAATTTCGAGCTGGAAGAAAGGGATAGAACGGGAGATTAATCAACCTTTCTTTCGAGGAATTGCGTAAAGAAATTTTAGAAGAAAGATGTGAAAATAGGAAGGCTCAATGCTTCTCAATGGATGGGAATATGAGGAACAAAATTAAGGTTTAATTACAAATTAATTAAATTATAGGAGAAAAATATTTTTTTTTTCCGTCGGATTTTGGGTTTTGGTTTTCATTTGGTCAGTTTCAAAATGTTTTATTTTGAGTTAATTTAGTCCATAAGTTTTAAAATGTTACAATTTTACACTTAAGGCTTGAGTTTTATTTCAATTTAATTCCTAAGTTTTAAGATTTTACATTTTTAATCTTGATTCTTCTCTAAATATTCATTTTTAGTCATTGACGATAATGTCTCTTAATTAATTTAAAATAATTGTAAGCTGAAATTTTAAAATTGATGTTAGTAGTGATGAAAAAATTAGTTAAACTTAATTAATTATAATCTTTTCTGTTCTTTTACATTAATTAATAAACATAACATCAAAGATCGAAGAAAAGTATTTAGTGAAAAATCAAAATTAAAAGTGTAAATCTCGAAACTTAACCACTAAATTGAAACAAAATTTAAATCTTAAGGGTAAAATTGCAACATTTTGAAACTTAGAGACTAAATTAGAAATCAAACTCAAAACTTAAAAACTAAAAGTGTAACATCTTGGAAACCTCCTATTCAATATTAAAAAAAAAAAAAAATCATGTATGTACAATATACAAAATTGAATGTTTTGGGTATTCTTTAACATAAAATTCAAATTCAAATGGAAATTTAATAGATTAGTCAATTTTTGGAATTTTAAAATATGTCAATAATCTATTCGGCACAAAATTTAAGATTGACTTATTAGACATTTTTAAAATTGAGGGATCTATTAGATACAAACTTGAAATTCTCAATTGATACTATATAGAACCTTACAAATTTATCTCTTATGAGACCGTGGCATAATGGACTATTTTTTTAAGCATAACTAATATGAGGTATGAAGAACTTGAATTTTCAATCTCAAAGAAAAGAGTATATATGTCAATTACCACCGAGTAATGCTCAGTTAGCATGATAGACTATTGAATCTATTTTGTTAGCAGATTAGATAAATGAAAGGGTATACCATCTTGACCGAAAAGTTTGTATGAAAATATAGATTGAACTACAAATTTAGTCCTTAAACTTTGAAGTTTGTGTCTATTTGATCCTTGAACTTCTAAAAGTGTCTAATATGTTTCTAAACTTTCAATTAAGTAATCGAACCTTCAATTTTGTGTCTAATAGGTCATTAAACTTTCAGTTTTGTGTCCAGTAGAATTGTAAATTTTTAAAAGTATCAAAATATCAAAGTTTAAAAACTATATTTGTAATTTTGAAAGTTCAGAGACTAAATTGACACAAACCTCAAAATTCATGGACTAAATTTATATACTCAATCAACACTATCAAAATTTCTAATGCTTTATAAATTCCATTTCTACTGCTAATTCTTTAAGTTTTGTTAAGCAATTGAACAAAAATTGCTTATTTTGTTTAACTTCTAAACTTCTGTCTCAGATAAATTTCATACTGGCAAGTTGGTTGCATAGTCAGCTACCAACAGGAGCTTCATTAAACATAGCAAGCCTTTCTGCCTACTTGAGGCCTTCAACGGATGCTCCAAATTTCCTCATAGAGTTCATCCAAAGCTCTCCAACCTCCCTCATTCTCATTCTTGATCTGCCTCCTCGAAAGGATCCCGTCCTCAATCCCGACTACCTCCAATCGTTCTACGAAGACACGAGATTAGACACTTATCGCAAAACGATCGAAGAACTTCCCGAGACTCGACCGTACGTCATGTCCTCGCTTTTCTTTCGCTCCCTGGTTTCTCCAACTTCCATAATTTCTCGTGTCGATACGGAATCAGGTGGACCTGAACGCATGGAGGAGATTATAAAGAACCATGTCGGTCACGTCGCGAGAGACGTGCTTCGAGTATGGCTAGATGAATGTGCTTGCAAGGAGAGAGAGGTTGGAATGGTGGAAAGAGTTGAACTTGAGAAAAGAGATGAGTTGGTTAAGAAGAAAACTATTGACATAGACTTAGGTTCTAGTTTGCCAAGATTGTTTGGACAGGAAATAGCTGATAGAGTAGTGGCAGCTATTCAACAAGTCTTTGAAACATGAGAGTGATTTGCTTTTTGCTTGTTGGTTGTAAATATATGGTGTATTATTCAGTTTCAAATCTCTCACTTGCAATGAAAGAACTTAGCTCTTTTGATAATTATTTTGATATGGTTGGATTAGCTTGTTAAGTGAATGATTTAACTCTAATTTCAATCAGATTTGGATGAGTACAACCATAGTATTAAATTTCC

mRNA sequence

GAAAATTCCCGCCAAAGCCAAAGAAACCTGACTAAGCAGATATTTTCTCTATCCCTAATCTAATCCAAGTTTTTGTCCGATGCCTAACAAACATTACCCTTCGTACAAAGACAGATGAAGCTTGCTACCAATGGCGTCGATGGTTTATGCATCTGCAAAACCTTTTAGTCTTCCGCCGCCGTTACCGGTACAATCCTGTTTCAGAGCAAGGAAACCGGCGACAGTAATAAGGAGCGCGGCGTCGAACATGGCGGAGGGATCGTCATCGAAGCTGAAGGAGTTTCCGCATCTGTCGAGTTCTCACAGAGCTCTGATGGCCGATCTAATCGGCGCCATTGAAGATCGCTTGGAGGATCGTCTTCTTCCTTGTGCGCTTCCTCCTGATGTTGAGTACTACCAGAATCAGAACGGGACTTCGGAAGGCGCTCTTCTCATCAGATCTGGCTCGCCGGACTCTTCTATAAATTTCATACTGGCAAGTTGGTTGCATAGTCAGCTACCAACAGGAGCTTCATTAAACATAGCAAGCCTTTCTGCCTACTTGAGGCCTTCAACGGATGCTCCAAATTTCCTCATAGAGTTCATCCAAAGCTCTCCAACCTCCCTCATTCTCATTCTTGATCTGCCTCCTCGAAAGGATCCCGTCCTCAATCCCGACTACCTCCAATCGTTCTACGAAGACACGAGATTAGACACTTATCGCAAAACGATCGAAGAACTTCCCGAGACTCGACCGTACGTCATGTCCTCGCTTTTCTTTCGCTCCCTGGTTTCTCCAACTTCCATAATTTCTCGTGTCGATACGGAATCAGGTGGACCTGAACGCATGGAGGAGATTATAAAGAACCATGTCGGTCACGTCGCGAGAGACGTGCTTCGAGTATGGCTAGATGAATGTGCTTGCAAGGAGAGAGAGGTTGGAATGGTGGAAAGAGTTGAACTTGAGAAAAGAGATGAGTTGGTTAAGAAGAAAACTATTGACATAGACTTAGGTTCTAGTTTGCCAAGATTGTTTGGACAGGAAATAGCTGATAGAGTAGTGGCAGCTATTCAACAAGTCTTTGAAACATGAGAGTGATTTGCTTTTTGCTTGTTGGTTGTAAATATATGGTGTATTATTCAGTTTCAAATCTCTCACTTGCAATGAAAGAACTTAGCTCTTTTGATAATTATTTTGATATGGTTGGATTAGCTTGTTAAGTGAATGATTTAACTCTAATTTCAATCAGATTTGGATGAGTACAACCATAGTATTAAATTTCC

Coding sequence (CDS)

ATGGCGTCGATGGTTTATGCATCTGCAAAACCTTTTAGTCTTCCGCCGCCGTTACCGGTACAATCCTGTTTCAGAGCAAGGAAACCGGCGACAGTAATAAGGAGCGCGGCGTCGAACATGGCGGAGGGATCGTCATCGAAGCTGAAGGAGTTTCCGCATCTGTCGAGTTCTCACAGAGCTCTGATGGCCGATCTAATCGGCGCCATTGAAGATCGCTTGGAGGATCGTCTTCTTCCTTGTGCGCTTCCTCCTGATGTTGAGTACTACCAGAATCAGAACGGGACTTCGGAAGGCGCTCTTCTCATCAGATCTGGCTCGCCGGACTCTTCTATAAATTTCATACTGGCAAGTTGGTTGCATAGTCAGCTACCAACAGGAGCTTCATTAAACATAGCAAGCCTTTCTGCCTACTTGAGGCCTTCAACGGATGCTCCAAATTTCCTCATAGAGTTCATCCAAAGCTCTCCAACCTCCCTCATTCTCATTCTTGATCTGCCTCCTCGAAAGGATCCCGTCCTCAATCCCGACTACCTCCAATCGTTCTACGAAGACACGAGATTAGACACTTATCGCAAAACGATCGAAGAACTTCCCGAGACTCGACCGTACGTCATGTCCTCGCTTTTCTTTCGCTCCCTGGTTTCTCCAACTTCCATAATTTCTCGTGTCGATACGGAATCAGGTGGACCTGAACGCATGGAGGAGATTATAAAGAACCATGTCGGTCACGTCGCGAGAGACGTGCTTCGAGTATGGCTAGATGAATGTGCTTGCAAGGAGAGAGAGGTTGGAATGGTGGAAAGAGTTGAACTTGAGAAAAGAGATGAGTTGGTTAAGAAGAAAACTATTGACATAGACTTAGGTTCTAGTTTGCCAAGATTGTTTGGACAGGAAATAGCTGATAGAGTAGTGGCAGCTATTCAACAAGTCTTTGAAACATGA

Protein sequence

MASMVYASAKPFSLPPPLPVQSCFRARKPATVIRSAASNMAEGSSSKLKEFPHLSSSHRALMADLIGAIEDRLEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGSPDSSINFILASWLHSQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQSFYEDTRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNHVGHVARDVLRVWLDECACKEREVGMVERVELEKRDELVKKKTIDIDLGSSLPRLFGQEIADRVVAAIQQVFET

Homology

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BLAST of Lsi10G005500.1 vs. Swiss-Prot
Match: RCCR_ARATH (Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2)

HSP 1 Score: 279.3 bits (713), Expect = 5.3e-74
Identity = 142/310 (45.81%), Postives = 208/310 (67.10%), Query Frame = 1


Query: 5   VYASAKPFSLPPPLPVQSCFRARKPATVIRSAASNMAEGSSSKLKEFPHLSSSHRALMAD 64
           +Y+S+ P  L P     S F           +  +  +    K  EFP++S + + LM D
Sbjct: 9   LYSSSSPSYLSPLTSKPSRFSKNLRPRAQFQSMEDHDDHLRRKFMEFPYVSPTRKQLMVD 68

Query: 65  LIGAIEDRLEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGSPDSSINFILASWLHSQLP 124
           L+  +E+RL+ +LLPC LPPDV  + N NG++E +L IRSG   S I+F++ SW+H ++P
Sbjct: 69  LMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCKIP 128

Query: 125 TGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQSFYED 184
           TG SLNI S+S +L  ST APNF++E IQSS  SL+LILDLP RKD VLNPDYL+ +Y+D
Sbjct: 129 TGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQD 188

Query: 185 TRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNHVGHV 244
           T LD++R+++ +LPE  PYV  SLF RS  SPT+ + ++D E    +++EEI+++HV   
Sbjct: 189 TALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAEE--EDKLEEILRDHVSPA 248

Query: 245 ARDVLRVWLDECACKERE---VGMVERVELEKRDELVKKKTIDIDLGSSLPRLFGQEIAD 304
           A++VL VWL+ C  +E E   VG  ER+ELE+RD+  ++K+I+ DL    PR+FG+E++ 
Sbjct: 249 AKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSIEDDLDLQFPRMFGEEVSS 308

Query: 305 RVVAAIQQVF 312
           RVV AI++ F
Sbjct: 309 RVVHAIKEAF 316

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BLAST of Lsi10G005500.1 vs. Swiss-Prot
Match: RCCR_HORVU (Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=1 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.7e-49
Identity = 93/201 (46.27%), Postives = 141/201 (70.15%), Query Frame = 1


Query: 111 INFILASWLHSQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKD 170
           I+F+L S LH ++P GA ++I SL   L  STDAP+F++EFIQ SPTS++++LDL PRKD
Sbjct: 1   IDFMLQSSLHCKVPNGA-IDITSLFINLNASTDAPHFIMEFIQGSPTSMVVLLDLLPRKD 60

Query: 171 PVLNPDYLQSFYEDTRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGP 230
             L+P+Y++ +YEDT +D  RK IE+LP+ RPY+  SLF RS  SPT++   +D   GG 
Sbjct: 61  LALHPEYIEKYYEDTEVDKQRKIIEQLPQARPYLSPSLFVRSAFSPTAVFFTIDCGKGGE 120

Query: 231 ERMEEIIKNHVGHVARDVLRVWLDECACKEREVGMVERVELEKRDELVKKKTIDIDLGSS 290
             +EEI+  H+  V + +L++WLD CA    E+   ER  + KRD  V+ K+I++DL ++
Sbjct: 121 GTLEEIVHGHLASVVKGILQIWLDTCASDASEMEEGEREIMVKRDRTVRSKSIEVDLTAN 180

Query: 291 LPRLFGQEIADRVVAAIQQVF 312
           LPR+FG +++ R++A I++ F
Sbjct: 181 LPRMFGPDVSGRIIAEIRKAF 200

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BLAST of Lsi10G005500.1 vs. TrEMBL
Match: D1MWY7_CITLA (Red chlorophyll catabolite reductase OS=Citrullus lanatus subsp. vulgaris GN=CitRCCR PE=2 SV=1)

HSP 1 Score: 585.1 bits (1507), Expect = 5.0e-164
Identity = 297/312 (95.19%), Postives = 308/312 (98.72%), Query Frame = 1


Query: 1   MASMVYASAKPFSLPPPLPVQSCFRARKPATVIRSAASNMAEGSSSKLKEFPHLSSSHRA 60
           MASMVYASAKPFSLPPP+PVQSCF ARKPATVIRSAAS+MAEGSSSKLKEFPHLS SHRA
Sbjct: 1   MASMVYASAKPFSLPPPVPVQSCFTARKPATVIRSAASHMAEGSSSKLKEFPHLSGSHRA 60

Query: 61  LMADLIGAIEDRLEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGSPDSSINFILASWLH 120
           LMADLIGAIEDRLEDRLLPCALPPDVEYY+NQ+GTSEGALL+RSGSPDSSINFILASWLH
Sbjct: 61  LMADLIGAIEDRLEDRLLPCALPPDVEYYRNQSGTSEGALLVRSGSPDSSINFILASWLH 120

Query: 121 SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQS 180
           SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILD+PPRKDPVLNPDYLQ 
Sbjct: 121 SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDMPPRKDPVLNPDYLQL 180

Query: 181 FYEDTRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNH 240
           FYEDTRLDTYRKTIEELPETRPYVMSSL+FRSLVSPTSIISRVDTESGGPERMEEIIKNH
Sbjct: 181 FYEDTRLDTYRKTIEELPETRPYVMSSLYFRSLVSPTSIISRVDTESGGPERMEEIIKNH 240

Query: 241 VGHVARDVLRVWLDECACKEREVGMVERVELEKRDELVKKKTIDIDLGSSLPRLFGQEIA 300
           +G VARDVL+VWL+ECACKEREVGMVERV+LEKRDELVKKKTIDIDLGSSLPRLFGQEIA
Sbjct: 241 IGPVARDVLQVWLNECACKEREVGMVERVDLEKRDELVKKKTIDIDLGSSLPRLFGQEIA 300

Query: 301 DRVVAAIQQVFE 313
           DRVVAAIQQVFE
Sbjct: 301 DRVVAAIQQVFE 312

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BLAST of Lsi10G005500.1 vs. TrEMBL
Match: A0A0A0LJH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285300 PE=4 SV=1)

HSP 1 Score: 552.7 bits (1423), Expect = 2.8e-154
Identity = 281/312 (90.06%), Postives = 295/312 (94.55%), Query Frame = 1


Query: 1   MASMVYASAKPFSLPPPLPVQSCFRARKPATVIRSAASNMAEGSSSKLKEFPHLSSSHRA 60
           MA MVYASAKPFSLPP +P QS FRA KPA VIRS AS+MAEGSSSKLK+FPHLSSS RA
Sbjct: 1   MALMVYASAKPFSLPPLVPAQSSFRATKPARVIRSTASHMAEGSSSKLKDFPHLSSSQRA 60

Query: 61  LMADLIGAIEDRLEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGSPDSSINFILASWLH 120
           LM DLI AIEDR EDRLLPC LPPDVEYYQNQ+G SEGALLIRSGSPDSSINFILASWLH
Sbjct: 61  LMGDLINAIEDRFEDRLLPCTLPPDVEYYQNQSGNSEGALLIRSGSPDSSINFILASWLH 120

Query: 121 SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQS 180
           SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKD VLNPDYLQS
Sbjct: 121 SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDLVLNPDYLQS 180

Query: 181 FYEDTRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNH 240
           FYEDTRLDTYRKTIEELPE RPY+MSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNH
Sbjct: 181 FYEDTRLDTYRKTIEELPEARPYIMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNH 240

Query: 241 VGHVARDVLRVWLDECACKEREVGMVERVELEKRDELVKKKTIDIDLGSSLPRLFGQEIA 300
           VG +ARD++RVW+DECACKEREVGM+ERVE+EKRD L+KKKTIDIDLGSSLPRLFGQE+A
Sbjct: 241 VGPIARDMVRVWVDECACKEREVGMMERVEIEKRDGLIKKKTIDIDLGSSLPRLFGQEVA 300

Query: 301 DRVVAAIQQVFE 313
           DRVVAAIQQVF+
Sbjct: 301 DRVVAAIQQVFD 312

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BLAST of Lsi10G005500.1 vs. TrEMBL
Match: D7SVY1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00680 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 4.7e-93
Identity = 173/311 (55.63%), Postives = 236/311 (75.88%), Query Frame = 1


Query: 11  PFSLPPPLPVQSCFRA---RKPATVIRSAASNMA------EGSSSKLKEFPHLSSSHRAL 70
           P  LPPP    +   +   ++P  ++ +++S+ +       G  S+  EFPH+S+ HR L
Sbjct: 12  PLCLPPPSSRTASHYSVSPKRPPPIMAASSSSPSLTDPQYGGGRSRFMEFPHVSAPHRDL 71

Query: 71  MADLIGAIEDRLEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGSPDSSINFILASWLHS 130
           M +L+ A+E RL+  LLPC LPPDV+YY+NQ+GT++  L +RSG   S I+F+L SW+H 
Sbjct: 72  MVELVSAVEARLDSYLLPCTLPPDVQYYENQSGTAQATLHVRSGHDSSPIDFVLGSWIHC 131

Query: 131 QLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQSF 190
           QLP+G +LNI SLS YL PSTDAPNFLIE I+SSPTSL+LILDLPPRKD  L+PDYLQ+F
Sbjct: 132 QLPSGGALNITSLSTYLNPSTDAPNFLIELIRSSPTSLVLILDLPPRKDLALHPDYLQTF 191

Query: 191 YEDTRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNHV 250
           YEDT+L++ R+ +E++PE++PY  SSL+ R +VSPT+I++R++TE+GG ERMEEI+++HV
Sbjct: 192 YEDTKLESRRQLLEKIPESQPYFSSSLYIRCIVSPTAIMTRIETEAGGVERMEEILQSHV 251

Query: 251 GHVARDVLRVWLDECACKEREVGMVERVELEKRDELVKKKTIDIDLGSSLPRLFGQEIAD 310
           G VA +VL +WLD+CA  EREVG  E   LEKRD L++ KTI+IDLGSSLPRLFG E A 
Sbjct: 252 GPVAMEVLGIWLDQCAFGEREVGDSEISYLEKRDRLIRSKTIEIDLGSSLPRLFGPETAG 311

Query: 311 RVVAAIQQVFE 313
           RV+ A++ VF+
Sbjct: 312 RVLEAMRGVFK 322

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BLAST of Lsi10G005500.1 vs. TrEMBL
Match: A9PG24_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11060g PE=2 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 3.7e-90
Identity = 160/265 (60.38%), Postives = 212/265 (80.00%), Query Frame = 1


Query: 47  KLKEFPHLSSSHRALMADLIGAIEDRLEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGS 106
           K  EFP +S+ HR LM +L+  +EDRL   LLPC LP DV++ QN++G+++ +L IRSG 
Sbjct: 10  KFIEFPFVSAPHRDLMVNLLSTVEDRLGSHLLPCTLPLDVQHCQNESGSAQASLHIRSGL 69

Query: 107 PDSSINFILASWLHSQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLP 166
             S ++FIL SWLH +LPTG +LNI SLSAYL PSTDAPNF+IE IQSSPTSL+ ILDLP
Sbjct: 70  QSSQVDFILGSWLHCKLPTGGALNITSLSAYLNPSTDAPNFMIELIQSSPTSLVFILDLP 129

Query: 167 PRKDPVLNPDYLQSFYEDTRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTE 226
           PRKDPVL+PDYLQ+FYE+T+LDT+R+ + +LPE +PYV SSL+ RS++SPT ++ ++  +
Sbjct: 130 PRKDPVLSPDYLQTFYENTQLDTHRQMLAKLPEVQPYVSSSLYLRSVLSPTVVMIQIGAQ 189

Query: 227 SGGPERMEEIIKNHVGHVARDVLRVWLDECACKEREVGMVERVELEKRDELVKKKTIDID 286
           +GGPERMEEI+KNH+   A++VL +WLD CA  ER VG  E+  + KRDEL+KKKTI+ID
Sbjct: 190 AGGPERMEEIVKNHIDPTAQEVLGIWLDHCARGERLVGEEEKAYMMKRDELIKKKTIEID 249

Query: 287 LGSSLPRLFGQEIADRVVAAIQQVF 312
           LG++ PRLFG E+ DRV+ AIQ+V+
Sbjct: 250 LGTNFPRLFGPEVTDRVLGAIQKVY 274

[Close]

BLAST of Lsi10G005500.1 vs. TrEMBL
Match: A0A061DHW2_THECC (Red chlorophyll catabolite reductase, putative OS=Theobroma cacao GN=TCM_000609 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 4.8e-90
Identity = 168/299 (56.19%), Postives = 221/299 (73.91%), Query Frame = 1


Query: 13  SLPPPLPVQSCFRARKPATVIRSAASNMAEGSSSKLKEFPHLSSSHRALMADLIGAIEDR 72
           S  PP P    F +  PA       S+  + +  K  +FP +++ HR LM DL+  +E+R
Sbjct: 29  SFSPPSPRPQIFASASPA-------SSPMDTNPRKFMDFPFVTTPHRNLMIDLVSTVENR 88

Query: 73  LEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGSPDSSINFILASWLHSQLPTGASLNIA 132
           LE +L PC LPPDV++Y NQ+GTS+G+L IRSG   S ++FIL SWLH +LPTG +LNI 
Sbjct: 89  LESQLKPCTLPPDVQHYCNQSGTSQGSLHIRSGHSSSQVDFILGSWLHCELPTGGALNIT 148

Query: 133 SLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQSFYEDTRLDTYRK 192
           SLSAYL  STDAPNFLIE IQSSPTSL++ILDLPPRKD VL P+YLQ+FYE+TRLD+ R+
Sbjct: 149 SLSAYLNVSTDAPNFLIELIQSSPTSLVVILDLPPRKDLVLYPEYLQTFYENTRLDSLRQ 208

Query: 193 TIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNHVGHVARDVLRVW 252
           T+E+LPE + Y  S+L+ R + SPTSI+ RVDT+  GP RMEEI+K+HV  VA+  L +W
Sbjct: 209 TLEKLPEVQTYYSSALYIRCVTSPTSIMIRVDTKGAGPGRMEEIVKDHVDPVAKAALGIW 268

Query: 253 LDECACKEREVGMVERVELEKRDELVKKKTIDIDLGSSLPRLFGQEIADRVVAAIQQVF 312
           LD+CAC +R V   E+  LEKRD L+K KTI+IDLGS+ PRLFG +IA+R++  I++V+
Sbjct: 269 LDQCACGQRNVDEAEKAYLEKRDGLIKNKTIEIDLGSNFPRLFGPDIANRILGVIREVY 320

[Close]

BLAST of Lsi10G005500.1 vs. TAIR10
Match: AT4G37000.1 (AT4G37000.1 accelerated cell death 2 (ACD2))

HSP 1 Score: 279.3 bits (713), Expect = 3.0e-75
Identity = 142/310 (45.81%), Postives = 208/310 (67.10%), Query Frame = 1


Query: 5   VYASAKPFSLPPPLPVQSCFRARKPATVIRSAASNMAEGSSSKLKEFPHLSSSHRALMAD 64
           +Y+S+ P  L P     S F           +  +  +    K  EFP++S + + LM D
Sbjct: 9   LYSSSSPSYLSPLTSKPSRFSKNLRPRAQFQSMEDHDDHLRRKFMEFPYVSPTRKQLMVD 68

Query: 65  LIGAIEDRLEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGSPDSSINFILASWLHSQLP 124
           L+  +E+RL+ +LLPC LPPDV  + N NG++E +L IRSG   S I+F++ SW+H ++P
Sbjct: 69  LMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCKIP 128

Query: 125 TGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQSFYED 184
           TG SLNI S+S +L  ST APNF++E IQSS  SL+LILDLP RKD VLNPDYL+ +Y+D
Sbjct: 129 TGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQD 188

Query: 185 TRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNHVGHV 244
           T LD++R+++ +LPE  PYV  SLF RS  SPT+ + ++D E    +++EEI+++HV   
Sbjct: 189 TALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAEE--EDKLEEILRDHVSPA 248

Query: 245 ARDVLRVWLDECACKERE---VGMVERVELEKRDELVKKKTIDIDLGSSLPRLFGQEIAD 304
           A++VL VWL+ C  +E E   VG  ER+ELE+RD+  ++K+I+ DL    PR+FG+E++ 
Sbjct: 249 AKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSIEDDLDLQFPRMFGEEVSS 308

Query: 305 RVVAAIQQVF 312
           RVV AI++ F
Sbjct: 309 RVVHAIKEAF 316

[Close]

BLAST of Lsi10G005500.1 vs. NCBI nr
Match: gi|270308988|dbj|BAI52947.1| (red chlorophyll catabolite reductase [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 585.1 bits (1507), Expect = 7.2e-164
Identity = 297/312 (95.19%), Postives = 308/312 (98.72%), Query Frame = 1


Query: 1   MASMVYASAKPFSLPPPLPVQSCFRARKPATVIRSAASNMAEGSSSKLKEFPHLSSSHRA 60
           MASMVYASAKPFSLPPP+PVQSCF ARKPATVIRSAAS+MAEGSSSKLKEFPHLS SHRA
Sbjct: 1   MASMVYASAKPFSLPPPVPVQSCFTARKPATVIRSAASHMAEGSSSKLKEFPHLSGSHRA 60

Query: 61  LMADLIGAIEDRLEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGSPDSSINFILASWLH 120
           LMADLIGAIEDRLEDRLLPCALPPDVEYY+NQ+GTSEGALL+RSGSPDSSINFILASWLH
Sbjct: 61  LMADLIGAIEDRLEDRLLPCALPPDVEYYRNQSGTSEGALLVRSGSPDSSINFILASWLH 120

Query: 121 SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQS 180
           SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILD+PPRKDPVLNPDYLQ 
Sbjct: 121 SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDMPPRKDPVLNPDYLQL 180

Query: 181 FYEDTRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNH 240
           FYEDTRLDTYRKTIEELPETRPYVMSSL+FRSLVSPTSIISRVDTESGGPERMEEIIKNH
Sbjct: 181 FYEDTRLDTYRKTIEELPETRPYVMSSLYFRSLVSPTSIISRVDTESGGPERMEEIIKNH 240

Query: 241 VGHVARDVLRVWLDECACKEREVGMVERVELEKRDELVKKKTIDIDLGSSLPRLFGQEIA 300
           +G VARDVL+VWL+ECACKEREVGMVERV+LEKRDELVKKKTIDIDLGSSLPRLFGQEIA
Sbjct: 241 IGPVARDVLQVWLNECACKEREVGMVERVDLEKRDELVKKKTIDIDLGSSLPRLFGQEIA 300

Query: 301 DRVVAAIQQVFE 313
           DRVVAAIQQVFE
Sbjct: 301 DRVVAAIQQVFE 312

[Close]

BLAST of Lsi10G005500.1 vs. NCBI nr
Match: gi|659116001|ref|XP_008457849.1| (PREDICTED: red chlorophyll catabolite reductase-like [Cucumis melo])

HSP 1 Score: 561.6 bits (1446), Expect = 8.6e-157
Identity = 285/312 (91.35%), Postives = 300/312 (96.15%), Query Frame = 1


Query: 1   MASMVYASAKPFSLPPPLPVQSCFRARKPATVIRSAASNMAEGSSSKLKEFPHLSSSHRA 60
           MA MVYASAKPFSLP  +  QSCFRARKPA V+RS +S+MAEGSSSKLKEFPHLS+S RA
Sbjct: 1   MALMVYASAKPFSLPTLVAAQSCFRARKPARVMRSTSSHMAEGSSSKLKEFPHLSTSQRA 60

Query: 61  LMADLIGAIEDRLEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGSPDSSINFILASWLH 120
           LMADLI AIEDR EDRLLPC LPPDVEYYQNQ+GTSEGALLIRSGSPDSSINFILASWLH
Sbjct: 61  LMADLINAIEDRFEDRLLPCTLPPDVEYYQNQSGTSEGALLIRSGSPDSSINFILASWLH 120

Query: 121 SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQS 180
           SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQS
Sbjct: 121 SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQS 180

Query: 181 FYEDTRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNH 240
           FYEDTRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISR+DTESGGPERMEEIIKNH
Sbjct: 181 FYEDTRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRIDTESGGPERMEEIIKNH 240

Query: 241 VGHVARDVLRVWLDECACKEREVGMVERVELEKRDELVKKKTIDIDLGSSLPRLFGQEIA 300
           VG +ARDV+RVW+DECACKEREVGM+ERVELEKRD+LVKKKTIDIDLGSSLPRLFGQE+A
Sbjct: 241 VGPIARDVVRVWVDECACKEREVGMMERVELEKRDKLVKKKTIDIDLGSSLPRLFGQEVA 300

Query: 301 DRVVAAIQQVFE 313
           DRVVAAIQ+VF+
Sbjct: 301 DRVVAAIQRVFD 312

[Close]

BLAST of Lsi10G005500.1 vs. NCBI nr
Match: gi|778669988|ref|XP_011649338.1| (PREDICTED: red chlorophyll catabolite reductase [Cucumis sativus])

HSP 1 Score: 552.7 bits (1423), Expect = 4.0e-154
Identity = 281/312 (90.06%), Postives = 295/312 (94.55%), Query Frame = 1


Query: 1   MASMVYASAKPFSLPPPLPVQSCFRARKPATVIRSAASNMAEGSSSKLKEFPHLSSSHRA 60
           MA MVYASAKPFSLPP +P QS FRA KPA VIRS AS+MAEGSSSKLK+FPHLSSS RA
Sbjct: 1   MALMVYASAKPFSLPPLVPAQSSFRATKPARVIRSTASHMAEGSSSKLKDFPHLSSSQRA 60

Query: 61  LMADLIGAIEDRLEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGSPDSSINFILASWLH 120
           LM DLI AIEDR EDRLLPC LPPDVEYYQNQ+G SEGALLIRSGSPDSSINFILASWLH
Sbjct: 61  LMGDLINAIEDRFEDRLLPCTLPPDVEYYQNQSGNSEGALLIRSGSPDSSINFILASWLH 120

Query: 121 SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQS 180
           SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKD VLNPDYLQS
Sbjct: 121 SQLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDLVLNPDYLQS 180

Query: 181 FYEDTRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNH 240
           FYEDTRLDTYRKTIEELPE RPY+MSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNH
Sbjct: 181 FYEDTRLDTYRKTIEELPEARPYIMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNH 240

Query: 241 VGHVARDVLRVWLDECACKEREVGMVERVELEKRDELVKKKTIDIDLGSSLPRLFGQEIA 300
           VG +ARD++RVW+DECACKEREVGM+ERVE+EKRD L+KKKTIDIDLGSSLPRLFGQE+A
Sbjct: 241 VGPIARDMVRVWVDECACKEREVGMMERVEIEKRDGLIKKKTIDIDLGSSLPRLFGQEVA 300

Query: 301 DRVVAAIQQVFE 313
           DRVVAAIQQVF+
Sbjct: 301 DRVVAAIQQVFD 312

[Close]

BLAST of Lsi10G005500.1 vs. NCBI nr
Match: gi|225438706|ref|XP_002277744.1| (PREDICTED: red chlorophyll catabolite reductase [Vitis vinifera])

HSP 1 Score: 349.4 bits (895), Expect = 6.7e-93
Identity = 173/311 (55.63%), Postives = 236/311 (75.88%), Query Frame = 1


Query: 11  PFSLPPPLPVQSCFRA---RKPATVIRSAASNMA------EGSSSKLKEFPHLSSSHRAL 70
           P  LPPP    +   +   ++P  ++ +++S+ +       G  S+  EFPH+S+ HR L
Sbjct: 12  PLCLPPPSSRTASHYSVSPKRPPPIMAASSSSPSLTDPQYGGGRSRFMEFPHVSAPHRDL 71

Query: 71  MADLIGAIEDRLEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGSPDSSINFILASWLHS 130
           M +L+ A+E RL+  LLPC LPPDV+YY+NQ+GT++  L +RSG   S I+F+L SW+H 
Sbjct: 72  MVELVSAVEARLDSYLLPCTLPPDVQYYENQSGTAQATLHVRSGHDSSPIDFVLGSWIHC 131

Query: 131 QLPTGASLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQSF 190
           QLP+G +LNI SLS YL PSTDAPNFLIE I+SSPTSL+LILDLPPRKD  L+PDYLQ+F
Sbjct: 132 QLPSGGALNITSLSTYLNPSTDAPNFLIELIRSSPTSLVLILDLPPRKDLALHPDYLQTF 191

Query: 191 YEDTRLDTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGPERMEEIIKNHV 250
           YEDT+L++ R+ +E++PE++PY  SSL+ R +VSPT+I++R++TE+GG ERMEEI+++HV
Sbjct: 192 YEDTKLESRRQLLEKIPESQPYFSSSLYIRCIVSPTAIMTRIETEAGGVERMEEILQSHV 251

Query: 251 GHVARDVLRVWLDECACKEREVGMVERVELEKRDELVKKKTIDIDLGSSLPRLFGQEIAD 310
           G VA +VL +WLD+CA  EREVG  E   LEKRD L++ KTI+IDLGSSLPRLFG E A 
Sbjct: 252 GPVAMEVLGIWLDQCAFGEREVGDSEISYLEKRDRLIRSKTIEIDLGSSLPRLFGPETAG 311

Query: 311 RVVAAIQQVFE 313
           RV+ A++ VF+
Sbjct: 312 RVLEAMRGVFK 322

[Close]

BLAST of Lsi10G005500.1 vs. NCBI nr
Match: gi|694401294|ref|XP_009375706.1| (PREDICTED: red chlorophyll catabolite reductase, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 342.4 bits (877), Expect = 8.2e-91
Identity = 173/306 (56.54%), Postives = 236/306 (77.12%), Query Frame = 1


Query: 14  LPP---PLPVQSCFRARKPATVIRSAASNM---AEGSSSKLKEFPHLSSSHRALMADLIG 73
           LPP   PL   SC RA        SA+S M   ++GS +K  +FP++S+ H+ LM DL+ 
Sbjct: 19  LPPLSSPLLSPSCIRASSA-----SASSPMDPHSQGSKTKFIDFPYVSAPHKNLMVDLVL 78

Query: 74  AIEDRLEDRLLPCALPPDVEYYQNQNGTSEGALLIRSGSPDSSINFILASWLHSQLPTGA 133
            +E RL  +LLPC LPPDV+YYQN++GT+  +L IRSG   + ++FIL SWLH +LPTG 
Sbjct: 79  TLETRLGSQLLPCTLPPDVQYYQNESGTNHASLHIRSGLSSAPVDFILGSWLHCELPTGG 138

Query: 134 SLNIASLSAYLRPSTDAPNFLIEFIQSSPTSLILILDLPPRKDPVLNPDYLQSFYEDTRL 193
           +LNI SLS+YL P+TDAPNFL+E IQSSPTSL+LILDLPPRKD VL+PDYLQ+FY+DT+L
Sbjct: 139 ALNITSLSSYLNPTTDAPNFLLELIQSSPTSLVLILDLPPRKDLVLHPDYLQTFYQDTQL 198

Query: 194 DTYRKTIEELPETRPYVMSSLFFRSLVSPTSIISRVDTESGGPER-MEEIIKNHVGHVAR 253
           DT R+ +E+L E +PY  SSL+ RS+VSPT+I+ R++  SGG  + +E+II+N V  +A+
Sbjct: 199 DTPRQKLEKLAEVKPYFSSSLYIRSVVSPTAILVRIEAGSGGEGKGLEDIIENDVSPIAK 258

Query: 254 DVLRVWLDECACKEREVGMVERVELEKRDELVKKKTIDIDLGSSLPRLFGQEIADRVVAA 313
           +VLR+WLD+CAC +REVG  ER  L++RD+L+K+KTI+IDLGS+ PRLFG + ADRV+ A
Sbjct: 259 EVLRIWLDQCACGDREVGEDEREYLKRRDDLIKRKTIEIDLGSNFPRLFGADAADRVLGA 318

The following BLAST results are available for this feature:

BLAST of Lsi10G005500.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RCCR_ARATH	5.3e-74	45.81	Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=R...	[more]
RCCR_HORVU	7.7e-49	46.27	Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=1 ...	[more]

BLAST of Lsi10G005500.1 vs. TrEMBL


Match Name	E-value	Identity	Description
D1MWY7_CITLA	5.0e-164	95.19	Red chlorophyll catabolite reductase OS=Citrullus lanatus subsp. vulgaris GN=Cit...	[more]
A0A0A0LJH4_CUCSA	2.8e-154	90.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285300 PE=4 SV=1	[more]
D7SVY1_VITVI	4.7e-93	55.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00680 PE=4 SV=...	[more]
A9PG24_POPTR	3.7e-90	60.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11060g PE=2 SV=1	[more]
A0A061DHW2_THECC	4.8e-90	56.19	Red chlorophyll catabolite reductase, putative OS=Theobroma cacao GN=TCM_000609 ...	[more]

BLAST of Lsi10G005500.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37000.1	3.0e-75	45.81	accelerated cell death 2 (ACD2)	[more]

BLAST of Lsi10G005500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|270308988\|dbj\|BAI52947.1\|	7.2e-164	95.19	red chlorophyll catabolite reductase [Citrullus lanatus subsp. vulgaris]	[more]
gi\|659116001\|ref\|XP_008457849.1\|	8.6e-157	91.35	PREDICTED: red chlorophyll catabolite reductase-like [Cucumis melo]	[more]
gi\|778669988\|ref\|XP_011649338.1\|	4.0e-154	90.06	PREDICTED: red chlorophyll catabolite reductase [Cucumis sativus]	[more]
gi\|225438706\|ref\|XP_002277744.1\|	6.7e-93	55.63	PREDICTED: red chlorophyll catabolite reductase [Vitis vinifera]	[more]
gi\|694401294\|ref\|XP_009375706.1\|	8.2e-91	56.54	PREDICTED: red chlorophyll catabolite reductase, chloroplastic-like [Pyrus x bre...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009439	RCC_reductase

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015996	chlorophyll catabolic process
biological_process	GO:0009814	defense response, incompatible interaction
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0010363	regulation of plant-type hypersensitive response
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051743	red chlorophyll catabolite reductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G005500	Lsi10G005500	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G005500.1.five_prime_UTR.1	Lsi10G005500.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G005500.1.CDS.1	Lsi10G005500.1.CDS.1	CDS
Lsi10G005500.1.CDS.2	Lsi10G005500.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G005500.1.three_prime_UTR.1	Lsi10G005500.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G005500.1	Lsi10G005500.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009439	Red chlorophyll catabolite reductase	PFAM	PF06405	RCC_reductase	coord: 58..308 score: 9.5E
None	No IPR available	PANTHER	PTHR34685	FAMILY NOT NAMED	coord: 25..312 score: 2.6E
None	No IPR available	PANTHER	PTHR34685:SF2	RED CHLOROPHYLL CATABOLITE REDUCTASE, CHLOROPLASTIC	coord: 25..312 score: 2.6E