Lsi09G017720.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAATATTCGAACAAAAGAAAAAATTGAAGCGAGTTGAGTTGATAGGACGAGAAAGAAATAAATTAGAGAAAGGGCGAGAGAGGAGAGAGAACCCAGAGGCAGAAAACCATGGCTTCCAAGGCGAGCTTCTTCCTTATCCTTTCATTGCTGAGTGTGAGTGTACGTTATTCCATTTCGGAGGATCCCGTTCCAACTCCATGGCCTCTCCAATTTCACTCCATTCTCCTCATGAATCACACCGGAATTCTGCAGATAATCAACCTCTGGTACGACTGGCCTAATGGTCGGAATTTCAACATCATCCAACACCAGCTCGGCAACGTTCTCTACGACCTCGAATGGAACAACGGCACTTCCTTCTTCTACACTTTGGACTCTTCCAAGACTTGCTCTTCCGCTCAGCTTGAGGTGGGTATTCTCCGACCCAACTGGCTCGACGGAGCCAATTATCTGGGTCAACGCCATGTCGATGGCTTCCTCTGTAATGTCTGGGAGAAGGTCGATTTCATCTGGTATTACGAGGATGTTGAGACCAAGAGGCCTGTTCATTGGCTCTTCTACACTGGTAACCCTCTTTTTCCCCTACCTCTTCACTTTCATTCTTAATTTCCTGCCATTCATTATTCAATCAGGTTTCCCTTTCCCTTTCCCTTCCCCAATTGTGCAGGAAGACAGGCTCATGTGATGACATTTGAAGTGGGTGCTGTGCTGGAGGATGAGAAATGGCAAGCCCCTGTCTACTGCTTTGACGGCAAGGGAACTGGTGATAATAATAATAAGGTTCTCCACCAGAATTTGCCTGTAATGGATGGATTTCTAAGGGGCTCTCTATTCCCTGCTATTTGAAACCTTTTTTTTTTGTTTTCTTCCCTGCCTAGTCCCATCGCGCTGAACTTCTTGTACAATTTGAATAAATTAGATACTGAAGTTTATGTCTATATCTTCATGTTTGTTCTTGTTCAAGTAACTATGGAATTGCGATTGCCAAGTATCCTTCCACAACCTATCATTGGTAAATTTCTAGTATATATATTATACTGCAAAAATAACATGAACAGCTACTACTAGTAGAGTTCTGTATAAACTATTAACTATAGTACAAGATGCAGTAAGAAGGTATGGACTTATCGTCTGCTAAGACTCCTGGCTGAACGATTCTTCCTGCAGGGTGTTTTTCTGATGATCTAATCAGCATTCTGACTAACCTCTTGCTGCTCAAGCTTTGTAATC AAAAAATATTCGAACAAAAGAAAAAATTGAAGCGAGTTGAGTTGATAGGACGAGAAAGAAATAAATTAGAGAAAGGGCGAGAGAGGAGAGAGAACCCAGAGGCAGAAAACCATGGCTTCCAAGGCGAGCTTCTTCCTTATCCTTTCATTGCTGAGTGTGAGTGTACGTTATTCCATTTCGGAGGATCCCGTTCCAACTCCATGGCCTCTCCAATTTCACTCCATTCTCCTCATGAATCACACCGGAATTCTGCAGATAATCAACCTCTGGTACGACTGGCCTAATGGTCGGAATTTCAACATCATCCAACACCAGCTCGGCAACGTTCTCTACGACCTCGAATGGAACAACGGCACTTCCTTCTTCTACACTTTGGACTCTTCCAAGACTTGCTCTTCCGCTCAGCTTGAGGTGGGTATTCTCCGACCCAACTGGCTCGACGGAGCCAATTATCTGGGTCAACGCCATGTCGATGGCTTCCTCTGTAATGTCTGGGAGAAGGTCGATTTCATCTGGTATTACGAGGATGTTGAGACCAAGAGGCCTGTTCATTGGCTCTTCTACACTGGAAGACAGGCTCATGTGATGACATTTGAAGTGGGTGCTGTGCTGGAGGATGAGAAATGGCAAGCCCCTGTCTACTGCTTTGACGGCAAGGGAACTGGTGATAATAATAATAAGGTTCTCCACCAGAATTTGCCTGTAATGGATGGATTTCTAAGGGGCTCTCTATTCCCTGCTATTTGAAACCTTTTTTTTTTGTTTTCTTCCCTGCCTAGTCCCATCGCGCTGAACTTCTTGTACAATTTGAATAAATTAGATACTGAAGTTTATGTCTATATCTTCATGTTTGTTCTTGTTCAAGTAACTATGGAATTGCGATTGCCAAGTATCCTTCCACAACCTATCATTGGTAAATTTCTAGTATATATATTATACTGCAAAAATAACATGAACAGCTACTACTAGTAGAGTTCTGTATAAACTATTAACTATAGTACAAGATGCAGTAAGAAGGTATGGACTTATCGTCTGCTAAGACTCCTGGCTGAACGATTCTTCCTGCAGGGTGTTTTTCTGATGATCTAATCAGCATTCTGACTAACCTCTTGCTGCTCAAGCTTTGTAATC ATGGCTTCCAAGGCGAGCTTCTTCCTTATCCTTTCATTGCTGAGTGTGAGTGTACGTTATTCCATTTCGGAGGATCCCGTTCCAACTCCATGGCCTCTCCAATTTCACTCCATTCTCCTCATGAATCACACCGGAATTCTGCAGATAATCAACCTCTGGTACGACTGGCCTAATGGTCGGAATTTCAACATCATCCAACACCAGCTCGGCAACGTTCTCTACGACCTCGAATGGAACAACGGCACTTCCTTCTTCTACACTTTGGACTCTTCCAAGACTTGCTCTTCCGCTCAGCTTGAGGTGGGTATTCTCCGACCCAACTGGCTCGACGGAGCCAATTATCTGGGTCAACGCCATGTCGATGGCTTCCTCTGTAATGTCTGGGAGAAGGTCGATTTCATCTGGTATTACGAGGATGTTGAGACCAAGAGGCCTGTTCATTGGCTCTTCTACACTGGAAGACAGGCTCATGTGATGACATTTGAAGTGGGTGCTGTGCTGGAGGATGAGAAATGGCAAGCCCCTGTCTACTGCTTTGACGGCAAGGGAACTGGTGATAATAATAATAAGGTTCTCCACCAGAATTTGCCTGTAATGGATGGATTTCTAAGGGGCTCTCTATTCCCTGCTATTTGA MASKASFFLILSLLSVSVRYSISEDPVPTPWPLQFHSILLMNHTGILQIINLWYDWPNGRNFNIIQHQLGNVLYDLEWNNGTSFFYTLDSSKTCSSAQLEVGILRPNWLDGANYLGQRHVDGFLCNVWEKVDFIWYYEDVETKRPVHWLFYTGRQAHVMTFEVGAVLEDEKWQAPVYCFDGKGTGDNNNKVLHQNLPVMDGFLRGSLFPAI
BLAST of Lsi09G017720.1 vs. Swiss-Prot
Match: Y4141_ARATH (Uncharacterized protein At4g14100 OS=Arabidopsis thaliana GN=At4g14100 PE=2 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 6.7e-81 Identity = 127/172 (73.84%), Postives = 151/172 (87.79%), Query Frame = 1
BLAST of Lsi09G017720.1 vs. TrEMBL
Match: A0A0A0KDE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091310 PE=4 SV=1) HSP 1 Score: 395.6 bits (1015), Expect = 3.8e-107 Identity = 183/201 (91.04%), Postives = 190/201 (94.53%), Query Frame = 1
BLAST of Lsi09G017720.1 vs. TrEMBL
Match: A0A0A0KF68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091300 PE=4 SV=1) HSP 1 Score: 385.2 bits (988), Expect = 5.2e-104 Identity = 183/214 (85.51%), Postives = 190/214 (88.79%), Query Frame = 1
BLAST of Lsi09G017720.1 vs. TrEMBL
Match: E5GB54_CUCME (Glycosyl transferase OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 1.0e-91 Identity = 162/213 (76.06%), Postives = 179/213 (84.04%), Query Frame = 1
BLAST of Lsi09G017720.1 vs. TrEMBL
Match: A0A0D2NFQ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G197200 PE=4 SV=1) HSP 1 Score: 329.3 bits (843), Expect = 3.4e-87 Identity = 150/208 (72.12%), Postives = 173/208 (83.17%), Query Frame = 1
BLAST of Lsi09G017720.1 vs. TrEMBL
Match: A0A061E3I0_THECC (Transferases, transferring glycosyl groups OS=Theobroma cacao GN=TCM_008307 PE=4 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 4.4e-87 Identity = 149/200 (74.50%), Postives = 167/200 (83.50%), Query Frame = 1
BLAST of Lsi09G017720.1 vs. TAIR10
Match: AT4G14100.1 (AT4G14100.1 transferases, transferring glycosyl groups) HSP 1 Score: 301.6 bits (771), Expect = 3.8e-82 Identity = 127/172 (73.84%), Postives = 151/172 (87.79%), Query Frame = 1
BLAST of Lsi09G017720.1 vs. TAIR10
Match: AT3G23760.1 (AT3G23760.1 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 293.1 bits (749), Expect = 1.4e-79 Identity = 128/178 (71.91%), Postives = 151/178 (84.83%), Query Frame = 1
BLAST of Lsi09G017720.1 vs. NCBI nr
Match: gi|778711718|ref|XP_004140562.2| (PREDICTED: uncharacterized protein At4g14100-like [Cucumis sativus]) HSP 1 Score: 395.6 bits (1015), Expect = 5.5e-107 Identity = 183/201 (91.04%), Postives = 190/201 (94.53%), Query Frame = 1
BLAST of Lsi09G017720.1 vs. NCBI nr
Match: gi|659119932|ref|XP_008459920.1| (PREDICTED: uncharacterized protein At4g14100-like [Cucumis melo]) HSP 1 Score: 394.4 bits (1012), Expect = 1.2e-106 Identity = 183/199 (91.96%), Postives = 188/199 (94.47%), Query Frame = 1
BLAST of Lsi09G017720.1 vs. NCBI nr
Match: gi|659119928|ref|XP_008459918.1| (PREDICTED: uncharacterized protein At4g14100-like [Cucumis melo]) HSP 1 Score: 388.7 bits (997), Expect = 6.7e-105 Identity = 184/214 (85.98%), Postives = 192/214 (89.72%), Query Frame = 1
BLAST of Lsi09G017720.1 vs. NCBI nr
Match: gi|449445602|ref|XP_004140561.1| (PREDICTED: uncharacterized protein At4g14100-like [Cucumis sativus]) HSP 1 Score: 385.2 bits (988), Expect = 7.4e-104 Identity = 183/214 (85.51%), Postives = 190/214 (88.79%), Query Frame = 1
BLAST of Lsi09G017720.1 vs. NCBI nr
Match: gi|778711724|ref|XP_004140560.2| (PREDICTED: uncharacterized protein At4g14100-like [Cucumis sativus]) HSP 1 Score: 346.7 bits (888), Expect = 2.9e-92 Identity = 160/212 (75.47%), Postives = 176/212 (83.02%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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