Lsi09G016460.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAACAAATAAAATCATGCTCACGTTCAACATTCCCATGAAAGCTCTTGATGATGGAATCTCCATTATCCTTAGAGTTAAAACTTATGCCAATATGAAATGCACAAGAAAAATGTTCTCCATAATAATGCCTCCAACACCCGATCGTTGCTTCACAGCTGCCTTTCAAATGGCCCCTCAATTCTTCACTCTATTTACTTGCAATTATCTTCACTATGCCATCTTTTCCCTCCCCAACTTATACACTCTCATGTTGGATATGCAACGCCTTGGCTTCTCTTCACTAACCCTTTCTCTTTCCGAACAGTCCGATTTTTGTGTCGTCATCGCCCTTGAATTTCATACTTATGGTTAAGTACTTATTTTGATATATCATATATTTTTCTTCTTCTTTTTGTTTCTTTCTAGCTCCAAGAATTATAATAATAATCTTGTTTCTTGGCTTTTCTTGCAACTTTTAAAGGTGATGAGGAGAAACTTTCAGTTTGGCAATGTTGCCTACTTTCGAGTCCGAGGATGAGGAGGATGTAGGGGAAATTGATTATACTTACTTTGTCTCAATTGATATAGAGGATTTCAAAGGGATTGTGGAAGAGTTAGGCGATGATGATGAAGGTAATTAGATATAATAATAATAATAATAATAACTCAACTTTTTCTTTTCCATCTTCTATTTTCTTGAAAAATAAAGGTTGTAATAAGTTCAATTTTATTTCTAAAGATATTCTGTGTGTATCATCTTTTGTGACAGTTAGTGTTGTTCTAACGAATTCACAAATCAAGTTCTCTGTTGGATGGAGACTCATTACTCTTACTACAATGGTAATTTTTTTTAAATGTTTTTGTTTAATGATTATTCAAAATCATTAGTTTTGTAGGCATGTTTAACGTTTAGTTTGTTGAGTAGTGTGTTTCAAATAGAGTATATAAATTGGAAGAATTTATGGAATAATGTAAAATAATTTAAGTATCGTTTAGTAACCATTTTGCTTTTAGTTTTTAGTTTTTAAAAATTATACATACCTATTATCTTTTATTTTCTTACCATGATTTGTATCAATCTTAAGTAGAAGAATTGTATATTTAACCAAATTAAAAAAAAAAAAAAAGCTTTTAAAAACTACTTCTTTTAGTTTTTTAAATTTTGACTTGATTTTTAAAAAAAATTAGTAAAAAGTAAAAATCAAAGTAAGAGATTTAGAGGTAGAAGAAGTGTTTATAAGTTTAATTTTTAAAAACTATAAACGAAATAGTTATCAAACAAGGTCTTAATTTTCATTTGATAATTATTTGGTTTTTTAAAATTAATAAGCTTATAAATATAATATCTCTATCTAGCTACACGTATTTTTTTTAATCCACTTTCCACCAATATTATAAAAAAAACTAAGCTAAACTTTGAAAACTAAAAAACAAAAAGTTTTTGTGTTTTTAAAATTTTGCTAAGAATTTAACTTTTTGTTTAAGAAACGTGAAAACCATAGTATGAAATTGATGAGAAAACTAACATAAATTTTAATAATAGAAAACTAAAAACAAAGACCCTATTTAATAACCATTTAATTTTTAGAGATTGAAGTTTATTTTCTCTGTTATGTTATCCATTTTCCATTAATGTTTTCAAAAACTAAGATAAATTCTTTAAGATAGGTGGAAACTGAAAACCCTTATAGAGGAAAACTAAGAGGAAACAAACATAAATTTCAAAAATAGAAAAGTAAAATTAAAATCATTATCAAACTGGACCGAAATCCTTACCAAAGAGAGTCTTAACAAGTTTATGAACAAAACTTAGTCTTTAATTAAAGCACCTAAAAGTAATTATGTGCAAGCATAGGAACGATTTGGTTACATGAATTTAGAGTACTTATTGGTTGATGTTTTACAGAGAAAAGAATGCATAATTGGAGGCATTGCAGTAGGCGAAGAAATTCAAACCTCAATCAATTTCGATCCCATTGATTTTTTCAATAATTTCAAATCCGAAAGAGTATGGTTCTTCAAGTCGAATGATCATGATATAATGCTCACGGCTCCTATGGGATTGCATACTCGAATTTCGTCCTATTTTCCTCAGAGACTT AAACAAATAAAATCATGCTCACGTTCAACATTCCCATGAAAGCTCTTGATGATGGAATCTCCATTATCCTTAGAGTTAAAACTTATGCCAATATGAAATGCACAAGAAAAATGTTCTCCATAATAATGCCTCCAACACCCGATCGTTGCTTCACAGCTGCCTTTCAAATGGCCCCTCAATTCTTCACTCTATTTACTTGCAATTATCTTCACTATGCCATCTTTTCCCTCCCCAACTTATACACTCTCATGTTGGATATGCAACGCCTTGGCTTCTCTTCACTAACCCTTTCTCTTTCCGAACAGTCCGATTTTTGTGTCGTCATCGCCCTTGAATTTCATACTTATGGAGAAACTTTCAGTTTGGCAATGTTGCCTACTTTCGAGTCCGAGGATGAGGAGGATGTAGGGGAAATTGATTATACTTACTTTGTCTCAATTGATATAGAGGATTTCAAAGGGATTGTGGAAGAGTTAGGCGATGATGATGAAGTTAGTGTTGTTCTAACGAATTCACAAATCAAGTTCTCTGTTGGATGGAGACTCATTACTCTTACTACAATGAGAAAAGAATGCATAATTGGAGGCATTGCAGTAGGCGAAGAAATTCAAACCTCAATCAATTTCGATCCCATTGATTTTTTCAATAATTTCAAATCCGAAAGAGTATGGTTCTTCAAGTCGAATGATCATGATATAATGCTCACGGCTCCTATGGGATTGCATACTCGAATTTCGTCCTATTTTCCTCAGAGACTT ATGCTCACGTTCAACATTCCCATGAAAGCTCTTGATGATGGAATCTCCATTATCCTTAGAGTTAAAACTTATGCCAATATGAAATGCACAAGAAAAATGTTCTCCATAATAATGCCTCCAACACCCGATCGTTGCTTCACAGCTGCCTTTCAAATGGCCCCTCAATTCTTCACTCTATTTACTTGCAATTATCTTCACTATGCCATCTTTTCCCTCCCCAACTTATACACTCTCATGTTGGATATGCAACGCCTTGGCTTCTCTTCACTAACCCTTTCTCTTTCCGAACAGTCCGATTTTTGTGTCGTCATCGCCCTTGAATTTCATACTTATGGAGAAACTTTCAGTTTGGCAATGTTGCCTACTTTCGAGTCCGAGGATGAGGAGGATGTAGGGGAAATTGATTATACTTACTTTGTCTCAATTGATATAGAGGATTTCAAAGGGATTGTGGAAGAGTTAGGCGATGATGATGAAGTTAGTGTTGTTCTAACGAATTCACAAATCAAGTTCTCTGTTGGATGGAGACTCATTACTCTTACTACAATGAGAAAAGAATGCATAATTGGAGGCATTGCAGTAGGCGAAGAAATTCAAACCTCAATCAATTTCGATCCCATTGATTTTTTCAATAATTTCAAATCCGAAAGAGTATGGTTCTTCAAGTCGAATGATCATGATATAATGCTCACGGCTCCTATGGGATTGCATACTCGAATTTCGTCCTATTTTCCTCAGAGACTT MLTFNIPMKALDDGISIILRVKTYANMKCTRKMFSIIMPPTPDRCFTAAFQMAPQFFTLFTCNYLHYAIFSLPNLYTLMLDMQRLGFSSLTLSLSEQSDFCVVIALEFHTYGETFSLAMLPTFESEDEEDVGEIDYTYFVSIDIEDFKGIVEELGDDDEVSVVLTNSQIKFSVGWRLITLTTMRKECIIGGIAVGEEIQTSINFDPIDFFNNFKSERVWFFKSNDHDIMLTAPMGLHTRISSYFPQRL
BLAST of Lsi09G016460.1 vs. TrEMBL
Match: A0A0A0KA10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107850 PE=4 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 6.2e-56 Identity = 121/179 (67.60%), Postives = 143/179 (79.89%), Query Frame = 1
BLAST of Lsi09G016460.1 vs. TrEMBL
Match: A0A0A0LMQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287140 PE=4 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 3.8e-21 Identity = 56/125 (44.80%), Postives = 86/125 (68.80%), Query Frame = 1
BLAST of Lsi09G016460.1 vs. TrEMBL
Match: A0A0A0LJU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287150 PE=4 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20 Identity = 57/126 (45.24%), Postives = 88/126 (69.84%), Query Frame = 1
BLAST of Lsi09G016460.1 vs. TrEMBL
Match: A0A0A0K9W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 2.7e-19 Identity = 74/250 (29.60%), Postives = 123/250 (49.20%), Query Frame = 1
BLAST of Lsi09G016460.1 vs. TrEMBL
Match: A0A0A0KCY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002350 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.8e-16 Identity = 56/121 (46.28%), Postives = 74/121 (61.16%), Query Frame = 1
BLAST of Lsi09G016460.1 vs. NCBI nr
Match: gi|700191331|gb|KGN46535.1| (hypothetical protein Csa_6G107850 [Cucumis sativus]) HSP 1 Score: 225.7 bits (574), Expect = 8.8e-56 Identity = 121/179 (67.60%), Postives = 143/179 (79.89%), Query Frame = 1
BLAST of Lsi09G016460.1 vs. NCBI nr
Match: gi|659117581|ref|XP_008458677.1| (PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo]) HSP 1 Score: 119.4 bits (298), Expect = 8.9e-24 Identity = 88/233 (37.77%), Postives = 123/233 (52.79%), Query Frame = 1
BLAST of Lsi09G016460.1 vs. NCBI nr
Match: gi|700206913|gb|KGN62032.1| (hypothetical protein Csa_2G287140 [Cucumis sativus]) HSP 1 Score: 110.2 bits (274), Expect = 5.4e-21 Identity = 56/125 (44.80%), Postives = 86/125 (68.80%), Query Frame = 1
BLAST of Lsi09G016460.1 vs. NCBI nr
Match: gi|700206914|gb|KGN62033.1| (hypothetical protein Csa_2G287150 [Cucumis sativus]) HSP 1 Score: 108.6 bits (270), Expect = 1.6e-20 Identity = 57/126 (45.24%), Postives = 88/126 (69.84%), Query Frame = 1
BLAST of Lsi09G016460.1 vs. NCBI nr
Match: gi|700190435|gb|KGN45639.1| (hypothetical protein Csa_6G002330 [Cucumis sativus]) HSP 1 Score: 104.0 bits (258), Expect = 3.9e-19 Identity = 74/250 (29.60%), Postives = 123/250 (49.20%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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