Lsi09G002810.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G002810.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 2950243 .. 2950452 (-)
Sequence length210
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGTCTTTATTCCCGAAGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCACCGCAGCCACTGAGAAGAGGGAGCCGGAGGCCGTCAACGGACGGCGGAGGAATTCCGACAAGGAGAAGGGAGCTGCCGGAAAAACTGGATTCCGGTTCGCCGCTACAACCGCCGACAATGTGGTTTTCAATTGCTTCTCTCCTTGA

mRNA sequence

ATGGACGTCTTTATTCCCGAAGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCACCGCAGCCACTGAGAAGAGGGAGCCGGAGGCCGTCAACGGACGGCGGAGGAATTCCGACAAGGAGAAGGGAGCTGCCGGAAAAACTGGATTCCGGTTCGCCGCTACAACCGCCGACAATGTGGTTTTCAATTGCTTCTCTCCTTGA

Coding sequence (CDS)

ATGGACGTCTTTATTCCCGAAGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCACCGCAGCCACTGAGAAGAGGGAGCCGGAGGCCGTCAACGGACGGCGGAGGAATTCCGACAAGGAGAAGGGAGCTGCCGGAAAAACTGGATTCCGGTTCGCCGCTACAACCGCCGACAATGTGGTTTTCAATTGCTTCTCTCCTTGA

Protein sequence

MDVFIPEDYVIRRRIEKKLAATAATEKREPEAVNGRRRNSDKEKGAAGKTGFRFAATTADNVVFNCFSP
Homology
[Close]
BLAST of Lsi09G002810.1 vs. TrEMBL
Match: A0A0A0KKA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154820 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.0e-16
Identity = 50/69 (72.46%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 1  MDVFIPEDYVIRRRIEKKLAATAATEKREPEAVNGRRRNSDKEKGAAGKTG-FRFAATTA 60
          MDVFIP+DYVIRRRIEKKLAA A  + R P   + R RNSDKEK A  KTG FRF AT A
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60

Query: 61 DNVVFNCFS 69
          DNVVFNCFS
Sbjct: 61 DNVVFNCFS 69

[Close]
BLAST of Lsi09G002810.1 vs. NCBI nr
Match: gi|659073763|ref|XP_008437240.1| (PREDICTED: uncharacterized protein LOC103482727 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 53/71 (74.65%), Postives = 56/71 (78.87%), Query Frame = 1 

Query: 1  MDVFIPEDYVIRRRIEKKLAATAATEKREPEAVNGR-RRNS--DKEKGAAGKTGFRFAAT 60
          MDVFIPEDYVIRRRIEKKLAA A  + R+P  V+ R RRNS  DKEK   GKTGFRF AT
Sbjct: 1  MDVFIPEDYVIRRRIEKKLAAQAPDKTRQPRPVDQRPRRNSDKDKEKETPGKTGFRFTAT 60

Query: 61 TADNVVFNCFS 69
           ADNVVFNCFS
Sbjct: 61 GADNVVFNCFS 71

[Close]
BLAST of Lsi09G002810.1 vs. NCBI nr
Match: gi|700194943|gb|KGN50120.1| (hypothetical protein Csa_5G154820 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 7.2e-16
Identity = 50/69 (72.46%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 1  MDVFIPEDYVIRRRIEKKLAATAATEKREPEAVNGRRRNSDKEKGAAGKTG-FRFAATTA 60
          MDVFIP+DYVIRRRIEKKLAA A  + R P   + R RNSDKEK A  KTG FRF AT A
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60

Query: 61 DNVVFNCFS 69
          DNVVFNCFS
Sbjct: 61 DNVVFNCFS 69

The following BLAST results are available for this feature:
BLAST of Lsi09G002810.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G002810.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKA7_CUCSA5.0e-1672.46Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154820 PE=4 SV=1[more]
BLAST of Lsi09G002810.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G002810.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659073763|ref|XP_008437240.1|2.5e-1674.65PREDICTED: uncharacterized protein LOC103482727 [Cucumis melo][more]
gi|700194943|gb|KGN50120.1|7.2e-1672.46hypothetical protein Csa_5G154820 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi09G002810Lsi09G002810gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi09G002810.1.CDS.1Lsi09G002810.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi09G002810.1Lsi09G002810.1-proteinpolypeptide