Lsi09G000630.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G000630.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr09 : 516115 .. 516714 (+)
Sequence length	600

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGAAGAACAATGGAAGTTGTTAAAGATCACGACTACTTGGAGAAGAGAATGGAAGAATTAAAAGACATGAGCGAAAAGCAAGAAGCAATAGCGAATTACTATGACACCAAATTACACACTGTAATTGTGGCTTACTTCATTTGGGAACGTGTCTTCTTCTTCTTCGTCTCCCAGAAAACTAATTCTCCTTCCTCCCTCAGCTGCAATAATGGCAACTTGTGGGTGATTCTTGCTCTAAGCTGTTTATGCAGCCTCGTTTACATGCTTCTTTTTGTCGACGCTGCCCTCATTCTCTACCAAACAGAGCATCAACTCAATCTCATCCTCCAAACACATGCGCAACTTTATCGACAAATCTGGACAATCAAAAGAGAAGCTGCTGACACCAATATAGATCCATCAATAATGGAGGCCGGGGATGATCAGTCTAACCAAGGACTCCGGCCAGAGGAGGAACTCATACTCATAATAAACTCAAATTCAGCATTTAGAAGGAGAGGGCAGAGGAAATTTTATGTGTATACCATTTTCTGTGCTCTGCTTGCTGTTGCTGCTTTAGAATTATATGCCTGCAAGTCTATGCTCTGCAATTGA

mRNA sequence

ATGACTAGAAGAACAATGGAAGTTGTTAAAGATCACGACTACTTGGAGAAGAGAATGGAAGAATTAAAAGACATGAGCGAAAAGCAAGAAGCAATAGCGAATTACTATGACACCAAATTACACACTGTAATTGTGGCTTACTTCATTTGGGAACGTGTCTTCTTCTTCTTCGTCTCCCAGAAAACTAATTCTCCTTCCTCCCTCAGCTGCAATAATGGCAACTTGTGGGTGATTCTTGCTCTAAGCTGTTTATGCAGCCTCGTTTACATGCTTCTTTTTGTCGACGCTGCCCTCATTCTCTACCAAACAGAGCATCAACTCAATCTCATCCTCCAAACACATGCGCAACTTTATCGACAAATCTGGACAATCAAAAGAGAAGCTGCTGACACCAATATAGATCCATCAATAATGGAGGCCGGGGATGATCAGTCTAACCAAGGACTCCGGCCAGAGGAGGAACTCATACTCATAATAAACTCAAATTCAGCATTTAGAAGGAGAGGGCAGAGGAAATTTTATGTGTATACCATTTTCTGTGCTCTGCTTGCTGTTGCTGCTTTAGAATTATATGCCTGCAAGTCTATGCTCTGCAATTGA

Coding sequence (CDS)

ATGACTAGAAGAACAATGGAAGTTGTTAAAGATCACGACTACTTGGAGAAGAGAATGGAAGAATTAAAAGACATGAGCGAAAAGCAAGAAGCAATAGCGAATTACTATGACACCAAATTACACACTGTAATTGTGGCTTACTTCATTTGGGAACGTGTCTTCTTCTTCTTCGTCTCCCAGAAAACTAATTCTCCTTCCTCCCTCAGCTGCAATAATGGCAACTTGTGGGTGATTCTTGCTCTAAGCTGTTTATGCAGCCTCGTTTACATGCTTCTTTTTGTCGACGCTGCCCTCATTCTCTACCAAACAGAGCATCAACTCAATCTCATCCTCCAAACACATGCGCAACTTTATCGACAAATCTGGACAATCAAAAGAGAAGCTGCTGACACCAATATAGATCCATCAATAATGGAGGCCGGGGATGATCAGTCTAACCAAGGACTCCGGCCAGAGGAGGAACTCATACTCATAATAAACTCAAATTCAGCATTTAGAAGGAGAGGGCAGAGGAAATTTTATGTGTATACCATTTTCTGTGCTCTGCTTGCTGTTGCTGCTTTAGAATTATATGCCTGCAAGTCTATGCTCTGCAATTGA

Protein sequence

MTRRTMEVVKDHDYLEKRMEELKDMSEKQEAIANYYDTKLHTVIVAYFIWERVFFFFVSQKTNSPSSLSCNNGNLWVILALSCLCSLVYMLLFVDAALILYQTEHQLNLILQTHAQLYRQIWTIKREAADTNIDPSIMEAGDDQSNQGLRPEEELILIINSNSAFRRRGQRKFYVYTIFCALLAVAALELYACKSMLCN

Homology

[Close]

BLAST of Lsi09G000630.1 vs. TrEMBL
Match: A0A0A0L822_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G484330 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 8.4e-48
Identity = 119/188 (63.30%), Postives = 141/188 (75.00%), Query Frame = 1


Query: 15  LEKRMEELKDMSEKQEAIANYYDTKLHTVIVAYFIWERVFFFFVSQKTNSP---SSLSCN 74
           LEKRMEELK MSEKQEA ANYYDTKLHT+I AYFIWER F F +S KTNSP   SSL C 
Sbjct: 6   LEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFSSLIC- 65

Query: 75  NGNLWVILALSCLCSLVYMLLFVDAALILYQTEHQLNLILQTHAQLYRQIWTIKREAADT 134
           + N  +ILALS L SLVY+LL++DAAL+LY++E + NLIL  HAQLY QI  IK+E    
Sbjct: 66  HANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQEF--N 125

Query: 135 NIDPSIMEAGDDQSNQGLRPEEELILIINSNSAFRRRGQRKFYVYTIFCALLAVAALELY 194
           +ID S MEA           EE+LIL+INS+S FRR  +R FY+ TIFCAL+ VA+LELY
Sbjct: 126 SIDSSSMEA-----------EEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELY 179

Query: 195 ACKSMLCN 200
           ACKS+LC+
Sbjct: 186 ACKSILCS 179

[Close]

BLAST of Lsi09G000630.1 vs. TrEMBL
Match: A0A0A0KUT0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G562290 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-21
Identity = 62/185 (33.51%), Postives = 104/185 (56.22%), Query Frame = 1


Query: 15  LEKRMEELKDMSEKQEAIANYYDTKLHTVIVAYFIWERVFFFFVSQKTNSPSSLSCNNGN 74
           ++K +EEL  M++ Q+     Y+T L  + +A+ +W R+FFF +SQ + + S L C +  
Sbjct: 9   MQKVLEELNAMADTQKGRVENYETSLQNIAIAFLVWLRLFFFSLSQTSPNSSLLHCKHW- 68

Query: 75  LWVILALSCLCSLVYMLLFVDAALILYQTEHQLNLILQTHAQLYRQIWTIKREAADTNID 134
            W++ AL+C  + +Y+LLF+  +L+L +TE QL++I +   QL++QIW ++ +     I+
Sbjct: 69  -WLLFALTCFSAFLYILLFIHNSLMLSRTERQLHVISRQQIQLHQQIWMLRLQELPQMIE 128

Query: 135 PSIMEAGDDQSNQGLRPEEELILIINSNSAFRRRGQRKFYVYTIFCALLAVAALELYACK 194
           P IM+                  IIN         +RK Y+  I C  + + ALELYA +
Sbjct: 129 PIIMDH-----------------IINGEMGRTSTFERKLYINCILCGFIGIVALELYASR 174

Query: 195 SMLCN 200
           S+LCN
Sbjct: 189 SLLCN 174

[Close]

BLAST of Lsi09G000630.1 vs. TrEMBL
Match: A0A0A0KJZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139810 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.5e-15
Identity = 65/185 (35.14%), Postives = 101/185 (54.59%), Query Frame = 1


Query: 15  LEKRMEELKDMSEKQEAIANYYDTKLHTVIVAYFIWERVFFFFVSQKTNSPSSLSCNNGN 74
           L K    LK +++ QE    Y +TKL  +++ Y  W R+FFF  S       S  C +  
Sbjct: 84  LRKNFVLLKHINDNQETSLRYCETKLQNIVLGYLSWGRLFFFGFS------FSFKCKDW- 143

Query: 75  LWVILALSCLCSLVYMLLFVDAALILYQTEHQLNLILQTHAQLYRQIWTIKREAADTNID 134
            WV+L+L+ L + +Y+LLF+DA ++L +T  QL +I +   ++ +QI   + +  DT +D
Sbjct: 144 -WVVLSLTLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEICQQILVAQNQ--DT-VD 203

Query: 135 PSIMEAGDDQSNQGLRPEEELILIINSNSAFRRRGQRKFYVYTIFCALLAVAALELYACK 194
            S ME G+      L   E + ++   +        RK Y+Y I CALL + A+ELYACK
Sbjct: 204 LS-MEGGECCDGFELSFHERMFMLDQFSVV---ENGRKGYIYFIVCALLVITAIELYACK 253

Query: 195 SMLCN 200
            +LCN
Sbjct: 264 RLLCN 253

[Close]

BLAST of Lsi09G000630.1 vs. TrEMBL
Match: E5GBE1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-13
Identity = 60/187 (32.09%), Postives = 100/187 (53.48%), Query Frame = 1


Query: 15  LEKRMEELKDMSEKQEAIANYYDTKLHTVIVAYFIWERVFFFFVSQKTNSPSSLSCNNGN 74
           L++  + LK ++EKQE    YY+T+   V +A  IW+R+F   +   ++S S L+C   +
Sbjct: 8   LKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNC-TPH 67

Query: 75  LWVILALSCLCSLVYMLLFVDAALILYQTEHQLNLILQTHAQLYRQIWTIKREAADTNID 134
           LW++L  S   + +Y+L F++A  +LY+ ++QL++I +   ++  QI             
Sbjct: 68  LWMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTG--------S 127

Query: 135 PSIMEAGD--DQSNQGLRPEEELILIINSNSAFRRRGQRKFYVYTIFCALLAVAALELYA 194
           P+  EAGD     N GL    ++ L+           QRK Y+ +    LLAV+A E+Y 
Sbjct: 128 PNDDEAGDTFSSDNGGLELSFQVQLLQYHPLTV---VQRKIYIASTISTLLAVSAFEVYT 182

Query: 195 CKSMLCN 200
           CK +LCN
Sbjct: 188 CKLLLCN 182

[Close]

BLAST of Lsi09G000630.1 vs. TrEMBL
Match: A0A0A0KM15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139820 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-13
Identity = 59/185 (31.89%), Postives = 100/185 (54.05%), Query Frame = 1


Query: 15  LEKRMEELKDMSEKQEAIANYYDTKLHTVIVAYFIWERVFFFFVSQKTNSPSSLSCNNGN 74
           L+++ + LK ++EKQE    YY+T+   + +A  IW+R+FF  +   ++S S L+C + +
Sbjct: 8   LKRKFDGLKFLAEKQEQRVRYYETRAQNLAIASLIWDRLFFVGMYHTSSSLSLLNCTH-H 67

Query: 75  LWVILALSCLCSLVYMLLFVDAALILYQTEHQLNLILQTHAQLYRQIWTIKREAADTNID 134
           LW++ +     + +Y L F++A  +LY+ ++QL++I +   ++  QI             
Sbjct: 68  LWMVFSFILSSTSLYFLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTG--------S 127

Query: 135 PSIMEAGDDQSNQGLRPEEELILIINSNSAFRRRGQRKFYVYTIFCALLAVAALELYACK 194
           P+  EAGD  S+     E    + +     F    QRK Y+ +    LLAVAA ELY CK
Sbjct: 128 PNDDEAGDSISSDNGWLELSFQVQLLPYHPF-TLVQRKVYIASTIFTLLAVAAFELYTCK 182

Query: 195 SMLCN 200
            +LCN
Sbjct: 188 LLLCN 182

[Close]

BLAST of Lsi09G000630.1 vs. NCBI nr
Match: gi|700202942|gb|KGN58075.1| (hypothetical protein Csa_3G484330 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 1.2e-47
Identity = 119/188 (63.30%), Postives = 141/188 (75.00%), Query Frame = 1


Query: 15  LEKRMEELKDMSEKQEAIANYYDTKLHTVIVAYFIWERVFFFFVSQKTNSP---SSLSCN 74
           LEKRMEELK MSEKQEA ANYYDTKLHT+I AYFIWER F F +S KTNSP   SSL C 
Sbjct: 6   LEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFSSLIC- 65

Query: 75  NGNLWVILALSCLCSLVYMLLFVDAALILYQTEHQLNLILQTHAQLYRQIWTIKREAADT 134
           + N  +ILALS L SLVY+LL++DAAL+LY++E + NLIL  HAQLY QI  IK+E    
Sbjct: 66  HANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQEF--N 125

Query: 135 NIDPSIMEAGDDQSNQGLRPEEELILIINSNSAFRRRGQRKFYVYTIFCALLAVAALELY 194
           +ID S MEA           EE+LIL+INS+S FRR  +R FY+ TIFCAL+ VA+LELY
Sbjct: 126 SIDSSSMEA-----------EEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELY 179

Query: 195 ACKSMLCN 200
           ACKS+LC+
Sbjct: 186 ACKSILCS 179

[Close]

BLAST of Lsi09G000630.1 vs. NCBI nr
Match: gi|700196294|gb|KGN51471.1| (hypothetical protein Csa_5G562290 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 3.3e-21
Identity = 62/185 (33.51%), Postives = 104/185 (56.22%), Query Frame = 1


Query: 15  LEKRMEELKDMSEKQEAIANYYDTKLHTVIVAYFIWERVFFFFVSQKTNSPSSLSCNNGN 74
           ++K +EEL  M++ Q+     Y+T L  + +A+ +W R+FFF +SQ + + S L C +  
Sbjct: 9   MQKVLEELNAMADTQKGRVENYETSLQNIAIAFLVWLRLFFFSLSQTSPNSSLLHCKHW- 68

Query: 75  LWVILALSCLCSLVYMLLFVDAALILYQTEHQLNLILQTHAQLYRQIWTIKREAADTNID 134
            W++ AL+C  + +Y+LLF+  +L+L +TE QL++I +   QL++QIW ++ +     I+
Sbjct: 69  -WLLFALTCFSAFLYILLFIHNSLMLSRTERQLHVISRQQIQLHQQIWMLRLQELPQMIE 128

Query: 135 PSIMEAGDDQSNQGLRPEEELILIINSNSAFRRRGQRKFYVYTIFCALLAVAALELYACK 194
           P IM+                  IIN         +RK Y+  I C  + + ALELYA +
Sbjct: 129 PIIMDH-----------------IINGEMGRTSTFERKLYINCILCGFIGIVALELYASR 174

Query: 195 SMLCN 200
           S+LCN
Sbjct: 189 SLLCN 174

[Close]

BLAST of Lsi09G000630.1 vs. NCBI nr
Match: gi|700194726|gb|KGN49903.1| (hypothetical protein Csa_5G139810 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 3.6e-15
Identity = 65/185 (35.14%), Postives = 101/185 (54.59%), Query Frame = 1


Query: 15  LEKRMEELKDMSEKQEAIANYYDTKLHTVIVAYFIWERVFFFFVSQKTNSPSSLSCNNGN 74
           L K    LK +++ QE    Y +TKL  +++ Y  W R+FFF  S       S  C +  
Sbjct: 84  LRKNFVLLKHINDNQETSLRYCETKLQNIVLGYLSWGRLFFFGFS------FSFKCKDW- 143

Query: 75  LWVILALSCLCSLVYMLLFVDAALILYQTEHQLNLILQTHAQLYRQIWTIKREAADTNID 134
            WV+L+L+ L + +Y+LLF+DA ++L +T  QL +I +   ++ +QI   + +  DT +D
Sbjct: 144 -WVVLSLTLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEICQQILVAQNQ--DT-VD 203

Query: 135 PSIMEAGDDQSNQGLRPEEELILIINSNSAFRRRGQRKFYVYTIFCALLAVAALELYACK 194
            S ME G+      L   E + ++   +        RK Y+Y I CALL + A+ELYACK
Sbjct: 204 LS-MEGGECCDGFELSFHERMFMLDQFSVV---ENGRKGYIYFIVCALLVITAIELYACK 253

Query: 195 SMLCN 200
            +LCN
Sbjct: 264 RLLCN 253

[Close]

BLAST of Lsi09G000630.1 vs. NCBI nr
Match: gi|307135919|gb|ADN33782.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 60/187 (32.09%), Postives = 100/187 (53.48%), Query Frame = 1


Query: 15  LEKRMEELKDMSEKQEAIANYYDTKLHTVIVAYFIWERVFFFFVSQKTNSPSSLSCNNGN 74
           L++  + LK ++EKQE    YY+T+   V +A  IW+R+F   +   ++S S L+C   +
Sbjct: 8   LKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNC-TPH 67

Query: 75  LWVILALSCLCSLVYMLLFVDAALILYQTEHQLNLILQTHAQLYRQIWTIKREAADTNID 134
           LW++L  S   + +Y+L F++A  +LY+ ++QL++I +   ++  QI             
Sbjct: 68  LWMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTG--------S 127

Query: 135 PSIMEAGD--DQSNQGLRPEEELILIINSNSAFRRRGQRKFYVYTIFCALLAVAALELYA 194
           P+  EAGD     N GL    ++ L+           QRK Y+ +    LLAV+A E+Y 
Sbjct: 128 PNDDEAGDTFSSDNGGLELSFQVQLLQYHPLTV---VQRKIYIASTISTLLAVSAFEVYT 182

Query: 195 CKSMLCN 200
           CK +LCN
Sbjct: 188 CKLLLCN 182

[Close]

BLAST of Lsi09G000630.1 vs. NCBI nr
Match: gi|700194727|gb|KGN49904.1| (hypothetical protein Csa_5G139820 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 59/185 (31.89%), Postives = 100/185 (54.05%), Query Frame = 1


Query: 15  LEKRMEELKDMSEKQEAIANYYDTKLHTVIVAYFIWERVFFFFVSQKTNSPSSLSCNNGN 74
           L+++ + LK ++EKQE    YY+T+   + +A  IW+R+FF  +   ++S S L+C + +
Sbjct: 8   LKRKFDGLKFLAEKQEQRVRYYETRAQNLAIASLIWDRLFFVGMYHTSSSLSLLNCTH-H 67

Query: 75  LWVILALSCLCSLVYMLLFVDAALILYQTEHQLNLILQTHAQLYRQIWTIKREAADTNID 134
           LW++ +     + +Y L F++A  +LY+ ++QL++I +   ++  QI             
Sbjct: 68  LWMVFSFILSSTSLYFLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTG--------S 127

Query: 135 PSIMEAGDDQSNQGLRPEEELILIINSNSAFRRRGQRKFYVYTIFCALLAVAALELYACK 194
           P+  EAGD  S+     E    + +     F    QRK Y+ +    LLAVAA ELY CK
Sbjct: 128 PNDDEAGDSISSDNGWLELSFQVQLLPYHPF-TLVQRKVYIASTIFTLLAVAAFELYTCK 182

Query: 195 SMLCN 200
            +LCN
Sbjct: 188 LLLCN 182

The following BLAST results are available for this feature:

BLAST of Lsi09G000630.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G000630.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L822_CUCSA	8.4e-48	63.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G484330 PE=4 SV=1	[more]
A0A0A0KUT0_CUCSA	2.3e-21	33.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G562290 PE=4 SV=1	[more]
A0A0A0KJZ3_CUCSA	2.5e-15	35.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139810 PE=4 SV=1	[more]
E5GBE1_CUCME	1.0e-13	32.09	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KM15_CUCSA	1.0e-13	31.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139820 PE=4 SV=1	[more]

BLAST of Lsi09G000630.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi09G000630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202942\|gb\|KGN58075.1\|	1.2e-47	63.30	hypothetical protein Csa_3G484330 [Cucumis sativus]	[more]
gi\|700196294\|gb\|KGN51471.1\|	3.3e-21	33.51	hypothetical protein Csa_5G562290 [Cucumis sativus]	[more]
gi\|700194726\|gb\|KGN49903.1\|	3.6e-15	35.14	hypothetical protein Csa_5G139810 [Cucumis sativus]	[more]
gi\|307135919\|gb\|ADN33782.1\|	1.5e-13	32.09	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700194727\|gb\|KGN49904.1\|	1.5e-13	31.89	hypothetical protein Csa_5G139820 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi09G000630	Lsi09G000630	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi09G000630.1.CDS.1	Lsi09G000630.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi09G000630.1	Lsi09G000630.1-protein	polypeptide