Lsi07G011340.1 (mRNA) Bottle gourd (USVL1VR-Ls)

NameLsi07G011340.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionDUF761 domain protein
Locationchr07 : 16772453 .. 16775478 (+)
Sequence length318
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTACACATAAAATTGAACTAGACTATGTTCAAATAACTTTCCATAACAAATGTTAAAATTGACATAGAATAAAGGTATAAATACTACTTTGTCCCTATACTTTTGGTTTTTGTTCGTTTTTGTCCTTATACTTTCAAAATGTTTATTTTGATCACTATATTTTAAATTTGGTTTATTTTGGTCCTTATACTTTCAAAATGTTCATTTTGGTCATTGTACTTTCAACTTTGGTTCATTTTAGTCATTGAACTTTTAAAAAGTGACCATTTTGATCCATTAAAAATAATATAAAAATAAAATGAATGAACCAAAATGAACATCTTGAAAGTACATGAACCAAAATGAACTACAATGACTAAAATGAACATATTAAAAGTATATGGATCAAAATAATATTTAAACCTAGAATAAATATACATGACGATATTTGTCAAAAAAAATTTTTTTTATCAAATTTGAAGAATAATTAGCAACTTTTCTCTCTTAACCAAAAAAAATTAGCAACTTTTCTCTTTTAGATGAAATGATTTTTTTTTCTCAAATTTCTATCGATTCACTCGTATGGGTAGCTAATAAGAGCTTAGCTCAGCTGACATCTGTACGTGTTAAGGACCAAGAGATCTGTGATTCAAATCTCCTCCCCCATTTGTACTAAAATCCCAATTGTTTCGGTTGTAAATTTCTTCAAACCAAATAACCATTATTAAATAATGACACCCCTAGTATTCACTCACATGGGAGCAGATTTGAGCGGAAAGTCAATTTGTACCAGCAATTTGTTGGCAGCCTGTCAGTTCATGACTGCTACATTTTATTGTTGTACTTCTCATTCTTCGTTATATCAAGGGCACTCTTGGTCACAGACTTCATTTTTCTTCTCAATCATTTTTTGTATTATATGGCTACTCTAATGCTGATTGAGTTGGTGATCATATCGATTGTCATTCCACCACATGGTTATTATTTCTACTTAGATGATTCAATCATTTCTTGGCAAAGTAAAAAACAAACTATTATTTCACGTTCCTATACAAAATTTGAATATCGTGCCCTTGCGAATGCTACTTTTTAGTTAATATGATTTCGTTGGCTTCTTGTTGATATAGATGTTCCTCAACAGTTTGCTATTATACTTCACTGTGACAATCATAGTGTCATTTAGATTGCTCAGAATGATTGTATTTCATGAACTTACCAAACACATTAAAAATGACTTTCACTTTTTGTTTATCATCATTTGATCATGAGCAAAACTCTCCTCTTACAATTCATCTCCAATACAAAACAACAAACAGATATCTTCACAAAAGATTTGTCACAGGATCGTTTCACTCAGTTGCTTCACAAACTCAAGTTGGTCACTACTCTTCCAGAGTTTCAACCGTCGAAATTTTGTCAGCCTGTTCGAGACACATGGGGTACCATTCTGAATGGTTGGATCGTTATTTGGAGCTCTGGTTTGTCCATAATCGTTGCTGAACAGAACCTGTAAAACTGGGTGAGTTTTGGGATTTTGGTCTCCGTTGGGTTATTTGTTTTACTGTTGGAAAATTTGGTTAATTCTCTAACGTTGATCTTGTGTTAGGTTTGGTTTGTTGAGAAAAGTTTGGGTTCAATCTTAGTTCGAGCCTCATTTTGTGTAAGCTTTTGGAGATCGTCAGTCTAAGCATTTTGGTTGGTTTAAATTTGATTATTTAAGTTAATTTTAATTTATGTTTAGGGTTACTCAAGGCAAGGAAAGAGATGAATTGGTGGTGAAGTGGACTTAGGTAAGTGACGTTATTATCGACTTGCATTTGTGCCAGACGCCCTAGTTCATGTTACCAAAGTTATCAGTGAAATTTGGGTGATTTTTTTTATGATCCATGAAAATTGAGCATACACACTTGTGATGTTTTATGAATTTATGATTTGTTGGTGTGAAACTCTGTTATTGGATGTGTATATATATATATATATATATGAAATACATGTTAGACAGATAGTGGTGATTTATCTTCCCGTCACGCCTCATGTTATGATACCGTGAATCGAGGTTCACTTCCATGTTTTGACGGTGCGCCATCAGACCACTAGACATATGTGAACTGACGAGTTCACCTCCATGTTACCATACCGTGGACCATCAGGTTCACTTTCATGATTTTGACGGTGCGCCTTTAGGCCACTAGACATGAGTGACTGGGCAGTCAAGTATCAGAATACATGCGATCCCGATAATGAGGTCACTTACTGAGTATTTTTATACTCACTCTTTCTTATGTTACAACTTTCAGATAAAGGCGAATGACAGGAAGAATCCGTGACCGTGCCGTTGGGACCATTCAAATGTTTCCGCTCATGTTTTTATGTTTTCATGTTTTTAAATCTCAGTCTTAATATTTAAATTTAGAATATTGGTTTTGCACATTAGATATTTATGCTTGTTTTCATAACTTCTAGGGTACCCCGATCCAAGATTTTTAATTATTTAAATTTGATGAAGTTATTTATTTTATAAATATCTTTGACTTTAGGCAAATAAGTCAAATATATGAAAGGTGTCAGATGCATGCATGAAGTAATGAACTAGAACAAGTCCTAAAGGTCTAGTCGTTACAATCTATAATTACACAATCGAATGAGGCTTGCATATAAATAGCCTCTTCATTTTCGCCGTTTTTCGGTCTTCCTACTTTTCGCTTTCTTTTTCATTTGACAGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCCTCCTACCTCAAGAACACGTTGAAGAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA

mRNA sequence

ATGATCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCCTCCTACCTCAAGAACACAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA

Coding sequence (CDS)

ATGATCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCCTCCTACCTCAAGAACACAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA

Protein sequence

MIQRKQRKMAEKTSPMASYLKNTNSLYLSASTVLPDGFGLSWKIRGNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLPLPPLPSIG
BLAST of Lsi07G011340.1 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 46  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 95
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 77  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 125

BLAST of Lsi07G011340.1 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-11
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1

Query: 49  KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGV--NSSETEYEERSPPLPLPP 101
           +DD+D RAEIFI+NFRRQLRLERQ SLQLR YGV  NS ET+YEE  PP P PP
Sbjct: 58  EDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPP 111

BLAST of Lsi07G011340.1 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 46  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 95
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 70  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

BLAST of Lsi07G011340.1 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 46  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 95
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 77  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 125

BLAST of Lsi07G011340.1 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-11
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1

Query: 49  KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGV--NSSETEYEERSPPLPLPP 101
           +DD+D RAEIFI+NFRRQLRLERQ SLQLR YGV  NS ET+YEE  PP P PP
Sbjct: 58  EDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPP 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L4Z8_CUCSA1.0e-1279.59Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1[more]
A0A0A0L6A3_CUCSA4.4e-1174.07Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778688278|ref|XP_011652707.1|1.5e-1279.59PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus][more]
gi|700200554|gb|KGN55687.1|1.5e-1279.59hypothetical protein Csa_3G004530 [Cucumis sativus][more]
gi|700200553|gb|KGN55686.1|6.3e-1174.07hypothetical protein Csa_3G004520 [Cucumis sativus][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008480DUF761_pln
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi07G011340Lsi07G011340gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi07G011340.1.CDS.1Lsi07G011340.1.CDS.1CDS
Lsi07G011340.1.CDS.2Lsi07G011340.1.CDS.2CDS
Lsi07G011340.1.CDS.3Lsi07G011340.1.CDS.3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi07G011340.1Lsi07G011340.1-proteinpolypeptide


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 49..79
score: 5.2
NoneNo IPR availablePANTHERPTHR33098FAMILY NOT NAMEDcoord: 50..89
score: 1.5
NoneNo IPR availablePANTHERPTHR33098:SF3SUBFAMILY NOT NAMEDcoord: 50..89
score: 1.5