Lsi07G004590.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G004590.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Nucleolar GTPase
Location	chr07 : 4891163 .. 4893158 (+)
Sequence length	378

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCCATTCTTTCAGGAAAACGATATGTCTGCGCCCTCGGAGAGATTTATAGGGTAGTTCAAGTGCTTAGAGCCTCAGTTGTACTTTACAAGCCATGGATACTGTTAGGTCGGGTTGATCCCAGTGACTTGATTTCTCTTCTGAATGAGTGCTCCGATATTTGGTTGAGTTCAGGACTCGTTGGAGCTCTCTGCAAGATAGATGGTCCTATTGATTGCAAAGCATTATTGGATTCTATCAATGTTATTCAGAATCTTGATGAATGGGGTTTGAGAAAGCATGTTCTCTTGGGACAACAACCTACTTGTAATCTATCGCTCTTAAGTGCTGAATCAATTCCAGGTATGCACTGATTCTATTATACTTTCTTTTTCCAAGCTAGGAACTTAGACTTCATTAGAACCGAAGATTACCAAGGAAGAGAGGGTGAGTCATCAAACCACTCACAGATGAAAGAGCTTACAGAGAACGTACTCCCATGTGCTTGAATACACACATATATAGAAGTAAAAATGGAAATGAAAAGAAAAAAAGACAATTACAAATGAACTTCAAGAGTATACCAAAAGAACCCCAAAAAACTAACAAGATTCCAAATTTCCAATTAAATGTTACAATTATCATTGAAGATCTAAGATTTCTTTCCTTTCAAAACTCCCAAAGAATAGCTTTAACAGTGTTCATCCTCATCCATATCATCTTTGCTTTTCTCTTAAAAAGATGACCACATAATAACAGCTGGTTATGTTTTCCATAAAGTTTGGAGAAAAGCACCAGCTTAACCCAAACTCCTTTGCAGCCTGCCCATCTCTCTTAGGCAATCTGCCGCTCCACTAACGTCTTCCTTCTGCATACAACACACCCACTAGCTCGAAGGGGGTAGTTTTTTCCTCTTCTGCTCTCTTTTGAATGACTTCCACTCTACATTATATTGCAATATCAAGAGAGATTACAATATTCAATAGCCTTCTGAGAGGGTTCCACAATGGACAATCCCACCAAAATGATCCTCCTCCAAAAACTCTAATACTCTATATTTAAATCCAGGTTTTTTTTACCTAATTACCACTATACCCTTACTATCCTATTACTATTCCCAAGATAGCCCCCATTAGTACCTTCACAAAAGACTCTGCCAAACAATCTCCACGTAGCAGTTGGCTTTCGTGGAAAAGTGAACTAAGTGGAAATCACCAGGAAAGTTGTGGATGAGCTAAGAATAAAGGAGAGAAGCTTGGCTTTCTAAAAAAGCATATGATAAGGTTTTCCGAATTTCCTTCAGAATGATAGTAAGCCTTTCGGTAAAGAGAAAAGAAAGTATTAGCTATCAAACCCAACGGAGAACGGGTTCAGGAAACCTAAGGTTAAAGAATGCCGTGATGATTACCAAATGGATTTGGCAGTCTGTTGATGGAAAACTTCTTGCGGCAAAAGCAACTAGGTAATTCCAAGCAAAGCAAGCATGGCAAAGATCGTCTTTAGTAGGTTTACTCTGAAGCAGTCATAATAACATGACGTGGATCATTCTAGTAACGAGGTTGGAGTTCCATCTTAGTGTTGTGAAGCATAAGTTCGAAATTTACTTTAACTTTTATGGATTTGTTGGGATTTCATAATAACCACAGCAACCAGATTATGGGTTACGTATGTTTGGGTTTGATGACTCTGAAAACTGTGACTCTTCCAGTTTTGTGCACCAACGATGTCTGGCCATCAGATTATCGCATTTAATTGATTAACTAAACAACCCCCCACCTCTCCCACATTGAAAAATAAATATTTGGAATTCTGGCAATCAAATACTATTCCCATGTCTATCTATATGCCCCCTTTGTAAAATTCATTTATACAGTTCCATCTTCCTGAGATTTTTGTTTGGCGTTAGGTATGGATTTGGTGGTCTGGAATGGGGAGAACTACTTTTTAAAGCTCGCAAACTTATGGGCAAATCTAATAGGTCGTGATCCTCCATTCATTCAGCACTCGAATAAT

mRNA sequence

ATGTCTGCCATTCTTTCAGGAAAACGATATGTCTGCGCCCTCGGAGAGATTTATAGGGTAGTTCAAGTGCTTAGAGCCTCAGTTGTACTTTACAAGCCATGGATACTGTTAGGTCGGGTTGATCCCAGTGACTTGATTTCTCTTCTGAATGAGTGCTCCGATATTTGGTTGAGTTCAGGACTCGTTGGAGCTCTCTGCAAGATAGATGGTCCTATTGATTGCAAAGCATTATTGGATTCTATCAATGTTATTCAGAATCTTGATGAATGGGGTATGGATTTGGTGGTCTGGAATGGGGAGAACTACTTTTTAAAGCTCGCAAACTTATGGGCAAATCTAATAGGTCGTGATCCTCCATTCATTCAGCACTCGAATAAT

Coding sequence (CDS)

ATGTCTGCCATTCTTTCAGGAAAACGATATGTCTGCGCCCTCGGAGAGATTTATAGGGTAGTTCAAGTGCTTAGAGCCTCAGTTGTACTTTACAAGCCATGGATACTGTTAGGTCGGGTTGATCCCAGTGACTTGATTTCTCTTCTGAATGAGTGCTCCGATATTTGGTTGAGTTCAGGACTCGTTGGAGCTCTCTGCAAGATAGATGGTCCTATTGATTGCAAAGCATTATTGGATTCTATCAATGTTATTCAGAATCTTGATGAATGGGGTATGGATTTGGTGGTCTGGAATGGGGAGAACTACTTTTTAAAGCTCGCAAACTTATGGGCAAATCTAATAGGTCGTGATCCTCCATTCATTCAGCACTCGAATAAT

Protein sequence

MSAILSGKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALCKIDGPIDCKALLDSINVIQNLDEWGMDLVVWNGENYFLKLANLWANLIGRDPPFIQHSNN

Homology

[Close]

BLAST of Lsi07G004590.1 vs. TrEMBL
Match: A0A0A0LJK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021680 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.8e-54
Identity = 107/145 (73.79%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 7   GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALC 66
           GK+Y+CALGEIYRV QVLRAS VLYKPW+LLG+VDPS LISL+NECS+IWLSSGLVGALC
Sbjct: 781 GKQYICALGEIYRVAQVLRASFVLYKPWVLLGQVDPSGLISLVNECSNIWLSSGLVGALC 840

Query: 67  KIDGPIDCKALLDSINVIQNLDEW-------------------------GMDLVVWNGEN 126
           KIDGPIDCKALLDSIN I NLDEW                         GMDLVVWNGEN
Sbjct: 841 KIDGPIDCKALLDSINAIDNLDEWGLRKHVLFRQQPICNLSLLSAESIPGMDLVVWNGEN 900

[Close]

BLAST of Lsi07G004590.1 vs. TrEMBL
Match: A6YTC8_CUCME (Nucleolar GTPase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.8e-51
Identity = 105/145 (72.41%), Postives = 112/145 (77.24%), Query Frame = 1


Query: 7   GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALC 66
           GK+Y+CALGEIYRVVQVLRAS VLYKPWILLG+VDP++LISL NECS+IWLSSGLV ALC
Sbjct: 789 GKQYICALGEIYRVVQVLRASFVLYKPWILLGQVDPNNLISLANECSNIWLSSGLVVALC 848

Query: 67  KIDGPIDCKALLDSINVIQNLDEW-------------------------GMDLVVWNGEN 126
           KIDGPIDCKALLDSIN I NLDEW                         GMDLVVWNGEN
Sbjct: 849 KIDGPIDCKALLDSINAIDNLDEWGLRKHVLLGQQPTCNLSLLSAESIPGMDLVVWNGEN 908

[Close]

BLAST of Lsi07G004590.1 vs. TrEMBL
Match: B9H5Q6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s03700g PE=4 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 66/148 (44.59%), Postives = 82/148 (55.41%), Query Frame = 1


Query: 7    GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALC 66
            GK Y+ ALGEIYRV++V+ +S  LYKPW+L+   DP  L +LL+ECS +W  SGL  AL 
Sbjct: 854  GKNYIVALGEIYRVIEVIGSSARLYKPWVLVSSTDPMGLFTLLSECSTLWSGSGLEEALQ 913

Query: 67   KIDGP--IDCK----ALLDSINVIQNLDEW-------------------------GMDLV 124
             I  P   DC      L++SI  I NLD                           GM +V
Sbjct: 914  SISDPSGADCNRDLTTLIESIKNIHNLDTLTLYNHVFCGQGPICRLSVLAAGAVPGMKMV 973

[Close]

BLAST of Lsi07G004590.1 vs. TrEMBL
Match: A0A061F2S7_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_026571 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.0e-24
Identity = 61/146 (41.78%), Postives = 84/146 (57.53%), Query Frame = 1


Query: 7   GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALC 66
           G++Y+ ALGEIYRVV+++ +S  LYKPWI+     P++++SL+ ECS +W SSGL  AL 
Sbjct: 791 GRQYILALGEIYRVVKIVESSTKLYKPWIMFSSEHPTNILSLVRECSTLWSSSGLEEALQ 850

Query: 67  KIDGPIDCK----ALLDSINVIQNLDEW-------------------------GMDLVVW 124
            +  P D K    ALL SI  I +LD                           GM +VVW
Sbjct: 851 SLSDPTDLKYDIEALLGSIQSIHDLDAHELYKQVFSGQESTCCLSGLGAGSVPGMKMVVW 910

[Close]

BLAST of Lsi07G004590.1 vs. TrEMBL
Match: A0A151U4Z9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_007019 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.6e-23
Identity = 65/144 (45.14%), Postives = 80/144 (55.56%), Query Frame = 1


Query: 7   GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALC 66
           G +Y+ ALGEIYRV +++ AS  LYKPW+L G +DP  L +LLNEC  IWL SGL  AL 
Sbjct: 662 GVQYILALGEIYRVAEIIGASAKLYKPWMLSGSLDPKSLCALLNECYSIWLDSGLEEALL 721

Query: 67  KIDG-----PID-CKALLDSINVIQNLDEW-------------------------GMDLV 120
            I       P D  + L++SI  I  LDE                          G +LV
Sbjct: 722 SISNQNNIEPDDISRELVESIKYIHELDEHALQSYVISGEQTTCQLSALSAGFIPGFNLV 781

[Close]

BLAST of Lsi07G004590.1 vs. TAIR10
Match: AT1G54920.3 (AT1G54920.3 unknown protein)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-23
Identity = 61/138 (44.20%), Postives = 78/138 (56.52%), Query Frame = 1


Query: 7   GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALC 66
           GK Y  ++GEIYRVV++LRAS  LYKPWILL     S+++++L+EC  +WLSSGLV AL 
Sbjct: 755 GKSYALSVGEIYRVVKILRASTRLYKPWILLAPTS-SNVLAVLDECLKLWLSSGLVEALL 814

Query: 67  KIDGPIDCKALLDSINVIQNLDEW-------------------------GMDLVVWNGEN 120
                     LL+SI  I  +D +                         G+  V WNGE+
Sbjct: 815 NSHDD-SADQLLESIKYINEVDAFTLYTCITSATSPTCYISGLNTDIVPGIKTVEWNGEH 874

[Close]

BLAST of Lsi07G004590.1 vs. NCBI nr
Match: gi|778666776|ref|XP_011648807.1| (PREDICTED: uncharacterized protein LOC101210593 isoform X1 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 5.5e-54
Identity = 107/145 (73.79%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 7   GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALC 66
           GK+Y+CALGEIYRV QVLRAS VLYKPW+LLG+VDPS LISL+NECS+IWLSSGLVGALC
Sbjct: 815 GKQYICALGEIYRVAQVLRASFVLYKPWVLLGQVDPSGLISLVNECSNIWLSSGLVGALC 874

Query: 67  KIDGPIDCKALLDSINVIQNLDEW-------------------------GMDLVVWNGEN 126
           KIDGPIDCKALLDSIN I NLDEW                         GMDLVVWNGEN
Sbjct: 875 KIDGPIDCKALLDSINAIDNLDEWGLRKHVLFRQQPICNLSLLSAESIPGMDLVVWNGEN 934

[Close]

BLAST of Lsi07G004590.1 vs. NCBI nr
Match: gi|700205778|gb|KGN60897.1| (hypothetical protein Csa_2G021680 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 5.5e-54
Identity = 107/145 (73.79%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 7   GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALC 66
           GK+Y+CALGEIYRV QVLRAS VLYKPW+LLG+VDPS LISL+NECS+IWLSSGLVGALC
Sbjct: 781 GKQYICALGEIYRVAQVLRASFVLYKPWVLLGQVDPSGLISLVNECSNIWLSSGLVGALC 840

Query: 67  KIDGPIDCKALLDSINVIQNLDEW-------------------------GMDLVVWNGEN 126
           KIDGPIDCKALLDSIN I NLDEW                         GMDLVVWNGEN
Sbjct: 841 KIDGPIDCKALLDSINAIDNLDEWGLRKHVLFRQQPICNLSLLSAESIPGMDLVVWNGEN 900

[Close]

BLAST of Lsi07G004590.1 vs. NCBI nr
Match: gi|778666779|ref|XP_011648808.1| (PREDICTED: uncharacterized protein LOC101210593 isoform X2 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 5.5e-54
Identity = 107/145 (73.79%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 7   GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALC 66
           GK+Y+CALGEIYRV QVLRAS VLYKPW+LLG+VDPS LISL+NECS+IWLSSGLVGALC
Sbjct: 814 GKQYICALGEIYRVAQVLRASFVLYKPWVLLGQVDPSGLISLVNECSNIWLSSGLVGALC 873

Query: 67  KIDGPIDCKALLDSINVIQNLDEW-------------------------GMDLVVWNGEN 126
           KIDGPIDCKALLDSIN I NLDEW                         GMDLVVWNGEN
Sbjct: 874 KIDGPIDCKALLDSINAIDNLDEWGLRKHVLFRQQPICNLSLLSAESIPGMDLVVWNGEN 933

[Close]

BLAST of Lsi07G004590.1 vs. NCBI nr
Match: gi|778666782|ref|XP_011648809.1| (PREDICTED: uncharacterized protein LOC101210593 isoform X3 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 5.5e-54
Identity = 107/145 (73.79%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 7   GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALC 66
           GK+Y+CALGEIYRV QVLRAS VLYKPW+LLG+VDPS LISL+NECS+IWLSSGLVGALC
Sbjct: 793 GKQYICALGEIYRVAQVLRASFVLYKPWVLLGQVDPSGLISLVNECSNIWLSSGLVGALC 852

Query: 67  KIDGPIDCKALLDSINVIQNLDEW-------------------------GMDLVVWNGEN 126
           KIDGPIDCKALLDSIN I NLDEW                         GMDLVVWNGEN
Sbjct: 853 KIDGPIDCKALLDSINAIDNLDEWGLRKHVLFRQQPICNLSLLSAESIPGMDLVVWNGEN 912

[Close]

BLAST of Lsi07G004590.1 vs. NCBI nr
Match: gi|778666785|ref|XP_004139183.2| (PREDICTED: uncharacterized protein LOC101210593 isoform X4 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 5.5e-54
Identity = 107/145 (73.79%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 7   GKRYVCALGEIYRVVQVLRASVVLYKPWILLGRVDPSDLISLLNECSDIWLSSGLVGALC 66
           GK+Y+CALGEIYRV QVLRAS VLYKPW+LLG+VDPS LISL+NECS+IWLSSGLVGALC
Sbjct: 792 GKQYICALGEIYRVAQVLRASFVLYKPWVLLGQVDPSGLISLVNECSNIWLSSGLVGALC 851

Query: 67  KIDGPIDCKALLDSINVIQNLDEW-------------------------GMDLVVWNGEN 126
           KIDGPIDCKALLDSIN I NLDEW                         GMDLVVWNGEN
Sbjct: 852 KIDGPIDCKALLDSINAIDNLDEWGLRKHVLFRQQPICNLSLLSAESIPGMDLVVWNGEN 911

The following BLAST results are available for this feature:

BLAST of Lsi07G004590.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G004590.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJK9_CUCSA	3.8e-54	73.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021680 PE=4 SV=1	[more]
A6YTC8_CUCME	1.8e-51	72.41	Nucleolar GTPase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
B9H5Q6_POPTR	1.9e-24	44.59	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s03700g PE=4 SV=2	[more]
A0A061F2S7_THECC	7.0e-24	41.78	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_026571 PE=4 SV=1	[more]
A0A151U4Z9_CAJCA	4.6e-23	45.14	Uncharacterized protein OS=Cajanus cajan GN=KK1_007019 PE=4 SV=1	[more]

BLAST of Lsi07G004590.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54920.3	1.1e-23	44.20	unknown protein	[more]

BLAST of Lsi07G004590.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778666776\|ref\|XP_011648807.1\|	5.5e-54	73.79	PREDICTED: uncharacterized protein LOC101210593 isoform X1 [Cucumis sativus]	[more]
gi\|700205778\|gb\|KGN60897.1\|	5.5e-54	73.79	hypothetical protein Csa_2G021680 [Cucumis sativus]	[more]
gi\|778666779\|ref\|XP_011648808.1\|	5.5e-54	73.79	PREDICTED: uncharacterized protein LOC101210593 isoform X2 [Cucumis sativus]	[more]
gi\|778666782\|ref\|XP_011648809.1\|	5.5e-54	73.79	PREDICTED: uncharacterized protein LOC101210593 isoform X3 [Cucumis sativus]	[more]
gi\|778666785\|ref\|XP_004139183.2\|	5.5e-54	73.79	PREDICTED: uncharacterized protein LOC101210593 isoform X4 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi07G004590	Lsi07G004590	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G004590.1.CDS.1	Lsi07G004590.1.CDS.1	CDS
Lsi07G004590.1.CDS.2	Lsi07G004590.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi07G004590.1	Lsi07G004590.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35701	FAMILY NOT NAMED	coord: 1..126 score: 2.8