Lsi07G003390.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G003390.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Location	chr07 : 3579414 .. 3583514 (-)
Sequence length	1568

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAAAAGAGCCAAATTTTGATTACAAGATGCAACTTTTAACTGTTTGTTGGTCAAAATGTTCAGTGTGAAAAGCCAAATCCAGATCCTTTTAATTTGGGAATGAATTGCTAAGAAATGAGTGTATTTATTTGTTTAGTTCATGTATATTGCTCTCGTTGTTATTAACCTATTTATCCCATTATAGTATTCCTCTGACCCTACCTTTTTCTTAATTATTATTGTTAATTGTGCTTATTTTTTTTTCAATATTATATTCGATGGAGATCGTCATTAAATTATGGAACTTTTGTCCACTTGTTTTCCTTTTGTCTTTTAGTATTTTGTATTCACATCGATAATTGTTGTTAATGTAGTAGATCAAAATGGATCATTTATACTGGTTTTTTTTAGGTTGTTGGTTTGACCTCTGACCATGACCATGATTGGGTTTTGTTATTAATTTAACAATCCAATGTGATATACATTATCTGCATGCTGTCTGAACCTCTGCATCAAAGTAATAATGTTTTGTCCAATCTATGGGGATGCAATTATTTCAAGGCATTTAATTAAAACTTATGAAGGTGTGAGTTCTATTTCTTGGTTGTAATATTCATTTGGTAAAAAAAAAAGGTCGAACAATGTATATTTATATGTAAATACACACCAACACAGGCATTTAAAAATATCCCTGTCTTGAACCTGTGGGAGTATACCTGTGTAGTTTCAGATATTCTCAGTTGACTTTCGTTGTTTGAGATCTTTTATAGATCAAATCTCCTTTTAGAATCTTTGCAATTTCTTTCTTCCCCTTAATAAATTTGCTATATTTTATTACGAAAGGTTAAATTACTAGTTTAATTCTTGAACTTTGAGGTTTGTGTCCATTTGTTTCTATAACTTTCAAAAGTGTCTAATAGGTCCCTATACTTTCAATTTTGTATCTAATAAGTCCTTGAAAATTTTGATTTTTTTAAAATTTTAATTGTTCTATTAGATATAAATTTGAATTTTATGTTTAATAGAACTTGAAATTTTCAATTTTCAATTATGTGTCTAGTACATCTTTGAATTTAAAAAAATTCGAAGGTCAAGGGCTAAATTTATAATTTTGAAAGTTTAGGGACTAAATAGAAACAAATCTCAAGTCAAAGACTAAATATGTTACTTGACCAATATGAAAATATAGTACTCATTCAGACTTACAACAATGGATATTTGTTGCCTATGTTCTTTGCATCTTGATTGATTGAATTTGATCTCTGTTCCAGGCAGAAGTGATGGACGTAGAAACGATGATGGAACCGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTCTTACATCCAAGCGACACAAGACTGATTTCTCTATCTCCTCTAAGGTTCCTATTGTTGGTTCAACTTCACATAGCAGCATATTGAAGATTAAGTTCCTATAATAATAATAACTAATCAGTGTTAATTGTATATATATATAGTAAGTTTTGGGCGGTCCATTAGACAGGCCTTCTGATCACATTAATTTGGGTGGTCCAATAATATTTCATTATTTTTCACTTGATTAGTCCCTATATCGTCCTGTTTTGTTCTATACGATATGCGCTGCCCCTTCATCCCATGGTTTTCCAAGTAATAATACTCTTTCTACAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGGTTTGTTGGGAACCAGTTAAATGTTCAAAGGAACCGATCTTTTATATTGAAATTTCTGGATAATATTGAGGGTTTATATGATCTGGGCCAAATTTTATTTTGGCTCTTGAAATCTATAAAGCCATGTTTCGTAATTTTGCTATAAGTATTAAAATCATGGACTGGTTTGAATTATAATTGTACAATTTCACTGCAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTAAGATCTTCTTGCTTAAAGTTTGTGATCTTTTTGAATTCTGATTTGGGTATCAGATATGAATGGCTATCATGCCATGCATATAGCTTTTCTATGGCATGTATAATACCTTTTCCCTCCATAAATTCCTTCTAATTGGTCCAGGGAATATATTTCTTTCTCACTTCCATATTTTTCTTCCGACACTAGTTAGTACTTGCATGCAAAACCTTTTGAGCATCAATCAGTGGCTAAAATTCATTGAATCTTTTTGGTGCAATTTGATATCAGTTTGGTTTATGTCTCTTTCCTTTCATTTTCCTCTATCTCTACTGGACTTTGTTTGCTGAAGTATTCTTCTATGCCTCTTTTAGTTTTTAGGTATTTAGTCATTGTGTGCCTTTCCTCCATCACTTTCTCTCTAATCAGTAATGGAACATGAGCTGCAAGATTGAATCAATTAATAGTTGTGCAACCAGTTATGGTTCTCTCTTCGTATAGACTATGATTGAGTTGTATATATAAGAGAATTTTGGCGACCACAGTTCGTGTAATGTAATCATGTTTGCCTGATTTTCAACCATTGATTTATTTATCATTTAAGTCCATGAAATTGGTGTAGTCTGGATGGTGGAGGACTAGAACAGAGAATTTTATCGACATCCACCAGGATTGATCTTTGACATAGACTGAAAATTTGTCTGCCACCTCCAATGAACTTTATTAAATACTAGTTGTGTATCTGTTTGGCTAGAACTTTCAAGTGTCGTTATATATTCCCTTATGTTATTTTGGCGTGCTTTCAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGTGAGCTTAGGCTGGACCTTTTGTTTCATGATTTGACCAAAAGTGTGTTTCGTAAACACTTTTTCTTAAAAGAAAAATAAAGCCAACGTCTGTTCCCTCAGGGAAATTTAACAAAGTGTGTTTCTTAAACCTTGACATTTATCTTTGTTAAATCAGTAATCAACTCAAAAGTTTAAAGTTATAGGTTATGTTAAAAATTTTATTATATCAAAATCTAACACTTTCTTCACTTGTGAGCTTGAAAATATATAGAAGGCCCAATATAGGACCAGCTTCGATATCATGTTAAATCACCAGACTAATCAACTCAAAAGTTTCATATAATAGGACGTATTTTTAATCATCAAACTTCTTAGGAGGATAAAATTGTGTGCCATTGAACGTTTTCACTACTTTATATATTGGATTCAAGTCTGACTGATGCTTCAACATCCAGATGTAAATCTTTTTGAATATAATCGCAAGGTTTATATTGGTTTTTTTGTTAGGAGCTGGAGCCATGCAGCCATAGCCTGAGGAGCAGAGGTCTATGTCTTGTTCCAATCTCGTGTACTGCCGGAGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAGTTTCCCCCAAATTTGAGAAGCCTATCTCACCATTCAATTGACCATTAAATCATCATCTCTCAGCAGCCAAATGGTTCTGAAGTTTCTACATACGGTTAGTAAAAAAGGTAACTACTTATCTTCTTATCTAATTTATAACAATTTTCCCTCTGGAAGTAGATGAATATTGTATCAAATAATTTAGGCATGGTGCTTGGAAAATGCCATTCTTTTGTTACAAAAGAATAGCCGAGTCTCATCGGATTCCAAGTTATGAATCAATCACCACACCATTCTAGTTTTAACGGGTGAAGGGTATAGTTTATCTCTGTAGTGTATTTGGTGTATTAAATGGTGGAAATGTGTATATTTGTAAACGAATTATATGATGATGATCCCAAATCAGAAATTCATGGTAGAGTAGCATTTGTTACCTGCCTACAAAAGGAGTAGTAGTTTTAATATCTAAGTTATGTTCATGTTGGTGCTTTGTCAGATCTTTTCTTGCCAATACACCGTGGGTATTTTGTGGCTTGGTAGCTGTAACAGCAATAAGATAAGTCGACCTTCAATCTCGAAGGCGTAAATAAGAATATTTTTCTTTGTTAATTGAGTACAATCTTTTTTGGTTGCTTAGTTCCTGTTTGATAACTAATGATTTGTTGCTTTAGTTTTTTAATATTATGCCTATAAACACTCTCTCCACCCCTA

mRNA sequence

ACAAAAAAGAGCCAAATTTTGATTACAAGATGCAACTTTTAACTGTTTGTTGGTCAAAATGTTCAGTGTGAAAAGCCAAATCCAGATCCTTTTAATTTGGGAATGAATTGCTAAGAAATGAGTGTATTTATTTGTTTAGTTCATGTATATTGCTCTCGTTGTTATTAACCTATTTATCCCATTATAGTATTCCTCTGACCCTACCTTTTTCTTAATTATTATTGTTAATTGTGCTTATTTTTTTTTCAATATTATATTCGATGGAGATCGTCATTAAATTATGGAACTTTTGTCCACTTGTTTTCCTTTTGTCTTTTAGTATTTTGTATTCACATCGATAATTGTTGTTAATGTAGTAGATCAAAATGGATCATTTATACTGGTTTTTTTTAGGTTGTTGGTTTGACCTCTGACCATGACCATGATTGGGTTTTGTTATTAATTTAACAATCCAATGTGATATACATTATCTGCATGCTGTCTGAACCTCTGCATCAAAGTAATAATGTTTTGTCCAATCTATGGGGATGCAATTATTTCAAGGCATTTAATTAAAACTTATGAAGGTGTGAGTTCTATTTCTTGGTTGTAATATTCATTTGGTAAAAAAAAAAGGTCGAACAATGTATATTTATATGTAAATACACACCAACACAGGCATTTAAAAATATCCCTGTCTTGAACCTGTGGGAGTATACCTGTGTAGTTTCAGATATTCTCAGTTGACTTTCGTTGTTTGAGATCTTTTATAGATCAAATCTCCTTTTAGAATCTTTGCAATTTCTTTCTTCCCCTTAATAAATTTGCTATATTTTATTACGAAAGGCAGAAGTGATGGACGTAGAAACGATGATGGAACCGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTCTTACATCCAAGCGACACAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGCTGGAGCCATGCAGCCATAGCCTGAGGAGCAGAGGTCTATGTCTTGTTCCAATCTCGTGTACTGCCGGAGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAGTTTCCCCCAAATTTGAGAAGCCTATCTCACCATTCAATTGACCATTAAATCATCATCTCTCAGCAGCCAAATGGTTCTGAAGTTTCTACATACGGTTAGTAAAAAAGATCTTTTCTTGCCAATACACCGTGGGTATTTTGTGGCTTGGTAGCTGTAACAGCAATAAGATAAGTCGACCTTCAATCTCGAAGGCGTAAATAAGAATATTTTTCTTTGTTAATTGAGTACAATCTTTTTTGGTTGCTTAGTTCCTGTTTGATAACTAATGATTTGTTGCTTTAGTTTTTTAATATTATGCCTATAAACACTCTCTCCACCCCTA

Coding sequence (CDS)

ATGGACGTAGAAACGATGATGGAACCGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTCTTACATCCAAGCGACACAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGCTGGAGCCATGCAGCCATAGCCTGAGGAGCAGAGGTCTATGTCTTGTTCCAATCTCGTGTACTGCCGGAGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAGTTTCCCCCAAATTTGAGAAGCCTATCTCACCATTCAATTGA

Protein sequence

MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTVSPKFEKPISPFN

Homology

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BLAST of Lsi07G003390.1 vs. Swiss-Prot
Match: BH113_ARATH (Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.9e-22
Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 1


Query: 17  DESALTSLTSKRHKTDFSIS-SKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQ 76
           D++       KR++   S+  +K RK++LGERI ALQQLVSPYGKTD ASVL EAM YI+
Sbjct: 132 DQNRKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIK 191

Query: 77  FLHEQVKVLSAPYLQSTPT---VLLQELEPC--SHSLRSRGLCLVPISCTAGVARSNGAD 136
           FL +Q++VL +PYL +      V+  ++     +  LRSRGLCLVP+S T  V  SNGAD
Sbjct: 192 FLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGAD 251

Query: 137 IWAPV---KTVSP 141
            W+P     T SP
Sbjct: 252 FWSPATMGHTTSP 264

[Close]

BLAST of Lsi07G003390.1 vs. Swiss-Prot
Match: BH123_ARATH (Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.3e-21
Identity = 61/118 (51.69%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 26  SKRHKTDFSISSK--ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 85
           +KR K++ +  S   +RK+K+G+RI ALQQLVSP+GKTD ASVL EA+EYI+FLH+QV  
Sbjct: 330 AKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSA 389

Query: 86  LSAPYLQSTPTVLLQ------ELEPCSH-SLRSRGLCLVPISCTAGVARSNGADIWAP 135
           LS PY++S  ++  Q      ELE      LRSRGLCLVP+S T  V      D W P
Sbjct: 390 LSNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTP 447

[Close]

BLAST of Lsi07G003390.1 vs. Swiss-Prot
Match: BH112_ARATH (Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-20
Identity = 56/106 (52.83%), Postives = 69/106 (65.09%), Query Frame = 1


Query: 38  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 97
           K RK+ L ++I +LQQLVSP+GKTDTASVL EA+EYI+FLH+QV VLS PY++   +   
Sbjct: 280 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQ 339

Query: 98  QEL---------EPCSHSLRSRGLCLVPISCTAGVARSNGADIWAP 135
           Q+          E  +H LR  GLCLVPIS T  VA    AD W P
Sbjct: 340 QQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTP 385

[Close]

BLAST of Lsi07G003390.1 vs. Swiss-Prot
Match: BH110_ARATH (Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 5.8e-18
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 38  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQST----- 97
           K RK+KLG+RI ALQQLVSP+GKTDTASVL+EA+ YI+FL  Q++ LS PY++++     
Sbjct: 332 KVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQSQIETLSVPYMRASRNRPG 391

Query: 98  -PTVLLQEL----EPCSHSLRSRGLCLVPISCTAGVARSNG 129
             + L+ +     E  +  LRSRGLCLVP+SC   V    G
Sbjct: 392 KASQLVSQSQEGDEEETRDLRSRGLCLVPLSCMTYVTGDGG 432

[Close]

BLAST of Lsi07G003390.1 vs. Swiss-Prot
Match: BH114_ARATH (Transcription factor bHLH114 OS=Arabidopsis thaliana GN=BHLH114 PE=2 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-16
Identity = 61/125 (48.80%), Postives = 73/125 (58.40%), Query Frame = 1


Query: 36  SSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTV 95
           S K RK+KLG+RI ALQQLVSP+GKTDTASVL EA+EYI+FL EQV VLS P   +  +V
Sbjct: 171 SFKVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKFLQEQVTVLSNPEQNTIGSV 230

Query: 96  LLQ--------------ELEPCSH----SLRSRGLCLVPISCTAGVARSNGADIWAPVKT 143
             Q              E + CS      L SRGLCL+PIS +  VA +  +     V  
Sbjct: 231 QQQQCSNKKSINTQGEVEEDECSPRRYVDLSSRGLCLMPISASYPVAAAAASAAEMNVHL 290

[Close]

BLAST of Lsi07G003390.1 vs. TrEMBL
Match: A0A0A0KYW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011680 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.7e-72
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 1


Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KR+LCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 18  MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 77

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 78  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 137

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 138 AGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Lsi07G003390.1 vs. TrEMBL
Match: M5XFT6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012528mg PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.4e-57
Identity = 118/150 (78.67%), Postives = 132/150 (88.00%), Query Frame = 1


Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           +DV  M E KRS CSVD+S  TSL SKRHKTD SIS+KERK+KLGERI+ALQQLVSPYGK
Sbjct: 19  IDVRNMTEHKRSPCSVDQSNFTSLASKRHKTDLSISTKERKEKLGERIVALQQLVSPYGK 78

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAM+YI+FLHEQVKVLSAPYL+STPT  +QELEP  +SLRSRGLCLVP+SCT
Sbjct: 79  TDTASVLLEAMDYIRFLHEQVKVLSAPYLESTPTAKMQELEP--YSLRSRGLCLVPVSCT 138

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVA+SNGADIWAP+K  SPKFE  IS F+
Sbjct: 139 AGVAQSNGADIWAPIKNTSPKFEDAISQFH 166

[Close]

BLAST of Lsi07G003390.1 vs. TrEMBL
Match: M5XT99_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012528mg PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.4e-56
Identity = 116/145 (80.00%), Postives = 129/145 (88.97%), Query Frame = 1


Query: 6   MMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTAS 65
           M E KRS CSVD+S  TSL SKRHKTD SIS+KERK+KLGERI+ALQQLVSPYGKTDTAS
Sbjct: 1   MTEHKRSPCSVDQSNFTSLASKRHKTDLSISTKERKEKLGERIVALQQLVSPYGKTDTAS 60

Query: 66  VLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTAGVAR 125
           VLLEAM+YI+FLHEQVKVLSAPYL+STPT  +QELEP  +SLRSRGLCLVP+SCTAGVA+
Sbjct: 61  VLLEAMDYIRFLHEQVKVLSAPYLESTPTAKMQELEP--YSLRSRGLCLVPVSCTAGVAQ 120

Query: 126 SNGADIWAPVKTVSPKFEKPISPFN 151
           SNGADIWAP+K  SPKFE  IS F+
Sbjct: 121 SNGADIWAPIKNTSPKFEDAISQFH 143

[Close]

BLAST of Lsi07G003390.1 vs. TrEMBL
Match: V4VSH7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022741mg PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.4e-55
Identity = 115/145 (79.31%), Postives = 128/145 (88.28%), Query Frame = 1


Query: 6   MMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTAS 65
           MME KRS C+VD+ +L +LTSKRHK D SIS+KERK+KLGERI+ALQQLVSPYGKTDTAS
Sbjct: 1   MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTAS 60

Query: 66  VLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTAGVAR 125
           VL EAMEYIQFLHEQVKVLSAPYLQS P   +QELE   +SLR+RGLCLVPISCTAGVAR
Sbjct: 61  VLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELE--QYSLRNRGLCLVPISCTAGVAR 120

Query: 126 SNGADIWAPVKTVSPKFEKPISPFN 151
           SNGADIWAP+KT SPKFEK I+ F+
Sbjct: 121 SNGADIWAPIKTTSPKFEKAITQFH 143

[Close]

BLAST of Lsi07G003390.1 vs. TrEMBL
Match: A0A067FKP2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032324mg PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.4e-55
Identity = 115/145 (79.31%), Postives = 128/145 (88.28%), Query Frame = 1


Query: 6   MMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTAS 65
           MME KRS C+VD+ +L +LTSKRHK D SIS+KERK+KLGERI+ALQQLVSPYGKTDTAS
Sbjct: 1   MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTAS 60

Query: 66  VLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTAGVAR 125
           VL EAMEYIQFLHEQVKVLSAPYLQS P   +QELE   +SLR+RGLCLVPISCTAGVAR
Sbjct: 61  VLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELE--QYSLRNRGLCLVPISCTAGVAR 120

Query: 126 SNGADIWAPVKTVSPKFEKPISPFN 151
           SNGADIWAP+KT SPKFEK I+ F+
Sbjct: 121 SNGADIWAPIKTTSPKFEKAITQFH 143

[Close]

BLAST of Lsi07G003390.1 vs. TAIR10
Match: AT1G05710.2 (AT1G05710.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 168.3 bits (425), Expect = 3.6e-42
Identity = 98/164 (59.76%), Postives = 115/164 (70.12%), Query Frame = 1


Query: 2   DVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKT 61
           D   MME KR++CS+ ES++     KRHK+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 62  DTASVLLEAMEYIQFLHEQVK----------------------VLSAPYLQSTPTVLLQE 121
           DTASVLL+AM YI+FLHEQVK                      VLSAPYLQ+ P    +E
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVCSSIPSMIHSSLSEFPCSFVQVLSAPYLQTVPDATQEE 125

Query: 122 LEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKT-VSPKF 143
           LE   +SLR+RGLCLVP+  T GVA+SNGADIWAPVKT +SP F
Sbjct: 126 LE--QYSLRNRGLCLVPMENTVGVAQSNGADIWAPVKTPLSPAF 162

[Close]

BLAST of Lsi07G003390.1 vs. TAIR10
Match: AT2G31730.1 (AT2G31730.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 165.2 bits (417), Expect = 3.0e-41
Identity = 91/135 (67.41%), Postives = 110/135 (81.48%), Query Frame = 1


Query: 4   ETMMEPKRSLCSVDESALTSLTSKRHKT-DFSISSKERKDKLGERIMALQQLVSPYGKTD 63
           E MME KR++ S++++ +     KRHK+ D S SSKERKDKL ERI ALQQLVSPYGKTD
Sbjct: 9   EMMMETKRNVYSLEDNKI-----KRHKSSDLSFSSKERKDKLAERISALQQLVSPYGKTD 68

Query: 64  TASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTAG 123
           TASVLLE M+YIQFL EQVKVLSAPYLQ+TP+   +E+E   +SLRS+GLCLVP+  T+ 
Sbjct: 69  TASVLLEGMQYIQFLQEQVKVLSAPYLQATPSTTEEEVE--EYSLRSKGLCLVPLEYTSE 128

Query: 124 VARSNGADIWAPVKT 138
           VA++NGADIWAPVKT
Sbjct: 129 VAQTNGADIWAPVKT 136

[Close]

BLAST of Lsi07G003390.1 vs. TAIR10
Match: AT3G19500.1 (AT3G19500.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-23
Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 1


Query: 17  DESALTSLTSKRHKTDFSIS-SKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQ 76
           D++       KR++   S+  +K RK++LGERI ALQQLVSPYGKTD ASVL EAM YI+
Sbjct: 132 DQNRKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIK 191

Query: 77  FLHEQVKVLSAPYLQSTPT---VLLQELEPC--SHSLRSRGLCLVPISCTAGVARSNGAD 136
           FL +Q++VL +PYL +      V+  ++     +  LRSRGLCLVP+S T  V  SNGAD
Sbjct: 192 FLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGAD 251

Query: 137 IWAPV---KTVSP 141
            W+P     T SP
Sbjct: 252 FWSPATMGHTTSP 264

[Close]

BLAST of Lsi07G003390.1 vs. TAIR10
Match: AT3G20640.1 (AT3G20640.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-22
Identity = 61/118 (51.69%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 26  SKRHKTDFSISSK--ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 85
           +KR K++ +  S   +RK+K+G+RI ALQQLVSP+GKTD ASVL EA+EYI+FLH+QV  
Sbjct: 330 AKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSA 389

Query: 86  LSAPYLQSTPTVLLQ------ELEPCSH-SLRSRGLCLVPISCTAGVARSNGADIWAP 135
           LS PY++S  ++  Q      ELE      LRSRGLCLVP+S T  V      D W P
Sbjct: 390 LSNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTP 447

[Close]

BLAST of Lsi07G003390.1 vs. TAIR10
Match: AT1G61660.1 (AT1G61660.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-21
Identity = 56/106 (52.83%), Postives = 69/106 (65.09%), Query Frame = 1


Query: 38  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 97
           K RK+ L ++I +LQQLVSP+GKTDTASVL EA+EYI+FLH+QV VLS PY++   +   
Sbjct: 280 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQ 339

Query: 98  QEL---------EPCSHSLRSRGLCLVPISCTAGVARSNGADIWAP 135
           Q+          E  +H LR  GLCLVPIS T  VA    AD W P
Sbjct: 340 QQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTP 385

[Close]

BLAST of Lsi07G003390.1 vs. NCBI nr
Match: gi|659108154|ref|XP_008454045.1| (PREDICTED: transcription factor bHLH113-like isoform X3 [Cucumis melo])

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 1


Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KRSLCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 18  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 77

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 78  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 137

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 138 AGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Lsi07G003390.1 vs. NCBI nr
Match: gi|659108156|ref|XP_008454046.1| (PREDICTED: transcription factor bHLH113-like isoform X4 [Cucumis melo])

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 1


Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KRSLCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 1   MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]

BLAST of Lsi07G003390.1 vs. NCBI nr
Match: gi|659108150|ref|XP_008454043.1| (PREDICTED: transcription factor bHLH113-like isoform X1 [Cucumis melo])

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 1


Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KRSLCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 64  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 123

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 124 TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 183

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 184 AGVARSNGADIWAPVKTISPKFEKHISPFN 213

[Close]

BLAST of Lsi07G003390.1 vs. NCBI nr
Match: gi|659108152|ref|XP_008454044.1| (PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo])

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 1


Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KRSLCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 59  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 118

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 119 TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 178

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 179 AGVARSNGADIWAPVKTISPKFEKHISPFN 208

[Close]

BLAST of Lsi07G003390.1 vs. NCBI nr
Match: gi|449468842|ref|XP_004152130.1| (PREDICTED: transcription factor bHLH113-like [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 2.4e-72
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 1


Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KR+LCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 18  MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 77

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 78  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 137

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 138 AGVARSNGADIWAPVKTISPKFEKHISPFN 167

The following BLAST results are available for this feature:

BLAST of Lsi07G003390.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH113_ARATH	3.9e-22	49.62	Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1	[more]
BH123_ARATH	4.3e-21	51.69	Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1	[more]
BH112_ARATH	2.8e-20	52.83	Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112 PE=2 SV=1	[more]
BH110_ARATH	5.8e-18	51.49	Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2	[more]
BH114_ARATH	2.4e-16	48.80	Transcription factor bHLH114 OS=Arabidopsis thaliana GN=BHLH114 PE=2 SV=2	[more]

BLAST of Lsi07G003390.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYW4_CUCSA	1.7e-72	95.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011680 PE=4 SV=1	[more]
M5XFT6_PRUPE	4.4e-57	78.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012528mg PE=4 SV=1	[more]
M5XT99_PRUPE	6.4e-56	80.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012528mg PE=4 SV=1	[more]
V4VSH7_9ROSI	5.4e-55	79.31	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022741mg PE=4 SV=1	[more]
A0A067FKP2_CITSI	5.4e-55	79.31	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032324mg PE=4 SV=1	[more]

BLAST of Lsi07G003390.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05710.2	3.6e-42	59.76	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G31730.1	3.0e-41	67.41	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G19500.1	2.2e-23	49.62	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G20640.1	2.4e-22	51.69	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G61660.1	1.6e-21	52.83	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of Lsi07G003390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108154\|ref\|XP_008454045.1\|	1.1e-72	96.00	PREDICTED: transcription factor bHLH113-like isoform X3 [Cucumis melo]	[more]
gi\|659108156\|ref\|XP_008454046.1\|	1.1e-72	96.00	PREDICTED: transcription factor bHLH113-like isoform X4 [Cucumis melo]	[more]
gi\|659108150\|ref\|XP_008454043.1\|	1.1e-72	96.00	PREDICTED: transcription factor bHLH113-like isoform X1 [Cucumis melo]	[more]
gi\|659108152\|ref\|XP_008454044.1\|	1.1e-72	96.00	PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo]	[more]
gi\|449468842\|ref\|XP_004152130.1\|	2.4e-72	95.33	PREDICTED: transcription factor bHLH113-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001046	core promoter sequence-specific DNA binding
molecular_function	GO:0001228	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi07G003390	Lsi07G003390	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi07G003390.1	Lsi07G003390.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G003390.1.three_prime_UTR.2	Lsi07G003390.1.three_prime_UTR.2	three_prime_UTR
Lsi07G003390.1.three_prime_UTR.1	Lsi07G003390.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G003390.1.CDS.5	Lsi07G003390.1.CDS.5	CDS
Lsi07G003390.1.CDS.4	Lsi07G003390.1.CDS.4	CDS
Lsi07G003390.1.CDS.3	Lsi07G003390.1.CDS.3	CDS
Lsi07G003390.1.CDS.2	Lsi07G003390.1.CDS.2	CDS
Lsi07G003390.1.CDS.1	Lsi07G003390.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G003390.1.five_prime_UTR.2	Lsi07G003390.1.five_prime_UTR.2	five_prime_UTR
Lsi07G003390.1.five_prime_UTR.1	Lsi07G003390.1.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 27..87 score: 2.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 36..83 score: 4.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 28..77 score: 11
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 30..91 score: 1.96
None	No IPR available	PANTHER	PTHR16223	FAMILY NOT NAMED	coord: 1..146 score: 4.9
None	No IPR available	PANTHER	PTHR16223:SF41	BHLH TRANSCRIPTION FACTOR	coord: 1..146 score: 4.9