Lsi06G010250.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G010250.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 20427571 .. 20427888 (-)
Sequence length318
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCAAAGTCTATGAGCACATCCATAATAAGGTTAGCACTTGTATTCTTAGTCTGCGTAGTCATTTTAGCCCCATCGGTGACAGCCCGCACGATGGCAGAAGCACCAAGTCCATCAGTATTAGAGGATTTATCTTTCTCACACTGCACGCCCTTTATTTTAAAGGCAACAATATGTGTGATAGATGTGATCAAACTTCCAGTTGCTCCACATCCTTCTTGTTGCAAAGCCATTTTTGAGCTCAACGACTGCGCCCCTGAGATTTATCAACATATTCTTGACATGGGTGTGATTAAGAAAATATGTTACATGTGA

mRNA sequence

ATGAAGGCAAAGTCTATGAGCACATCCATAATAAGGTTAGCACTTGTATTCTTAGTCTGCGTAGTCATTTTAGCCCCATCGGTGACAGCCCGCACGATGGCAGAAGCACCAAGTCCATCAGTATTAGAGGATTTATCTTTCTCACACTGCACGCCCTTTATTTTAAAGGCAACAATATGTGTGATAGATGTGATCAAACTTCCAGTTGCTCCACATCCTTCTTGTTGCAAAGCCATTTTTGAGCTCAACGACTGCGCCCCTGAGATTTATCAACATATTCTTGACATGGGTGTGATTAAGAAAATATGTTACATGTGA

Coding sequence (CDS)

ATGAAGGCAAAGTCTATGAGCACATCCATAATAAGGTTAGCACTTGTATTCTTAGTCTGCGTAGTCATTTTAGCCCCATCGGTGACAGCCCGCACGATGGCAGAAGCACCAAGTCCATCAGTATTAGAGGATTTATCTTTCTCACACTGCACGCCCTTTATTTTAAAGGCAACAATATGTGTGATAGATGTGATCAAACTTCCAGTTGCTCCACATCCTTCTTGTTGCAAAGCCATTTTTGAGCTCAACGACTGCGCCCCTGAGATTTATCAACATATTCTTGACATGGGTGTGATTAAGAAAATATGTTACATGTGA

Protein sequence

MKAKSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPSPSVLEDLSFSHCTPFILKATICVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHILDMGVIKKICYM
Homology
[Close]
BLAST of Lsi06G010250.1 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.4e-35
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 1 

Query: 4   KSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPSPSVL----EDLSFSHCTPFILKATI 63
           KS S S IRLA+VFLVC+VILAPSVTARTMAEAPSP ++    +D SFS+C PFIL+AT+
Sbjct: 5   KSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATM 64

Query: 64  CVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHILDMGVIKKIC 104
           CV+DVIKLPVA HPSCCKAI +LNDCAP+IYQHI DM VIKKIC
Sbjct: 65  CVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKIC 108

[Close]
BLAST of Lsi06G010250.1 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 1 

Query: 1   MKAKSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPS---PSVLEDLSFSHCTPFILKA 60
           M AKS+ T  ++L LVF+ C  I AP   A  +A AP+   P   ED+SF  C  F+ +A
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TICVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHI--LDMGVIKKIC 104
           T C+IDV K P+A HP+CCKAI +L  C+   +  I   DM VIK +C
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]
BLAST of Lsi06G010250.1 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-13
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 1 

Query: 11  IRLALVFLVCVVILAPSVTARTMAEAPSPSVLEDLSFSHCTPFILKATICVIDVIKLPVA 70
           ++L ++FLVC+ ILA  V  RT       S  +D++  +CT F  +AT C+IDV+K  + 
Sbjct: 5   LKLPIIFLVCIAILALPVMTRTTTTLDQFST-KDVASVNCTVFTFEATKCMIDVMKNSMP 64

Query: 71  PHPSCCKAIFELNDCAPEIYQHI--LDMGVIKKIC 104
           PHPSCC+AI +LNDC PE+Y+ +   D  +IKKIC
Sbjct: 65  PHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKIC 98

[Close]
BLAST of Lsi06G010250.1 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 1 

Query: 4   KSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPSPSVL----EDLSFSHCTPFILKATI 63
           KS S S IRLA+VFLVC+VILAPSVTARTMAEAPSP ++    +D SFS+C PFIL+AT+
Sbjct: 5   KSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATM 64

Query: 64  CVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHILDMGVIKKIC 104
           CV+DVIKLPVA HPSCCKAI +LNDCAP+IYQHI DM VIKKIC
Sbjct: 65  CVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKIC 108

[Close]
BLAST of Lsi06G010250.1 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-14
Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 1 

Query: 1   MKAKSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPS---PSVLEDLSFSHCTPFILKA 60
           M AKS+ T  ++L LVF+ C  I AP   A  +A AP+   P   ED+SF  C  F+ +A
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TICVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHI--LDMGVIKKIC 104
           T C+IDV K P+A HP+CCKAI +L  C+   +  I   DM VIK +C
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]
BLAST of Lsi06G010250.1 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 1 

Query: 11  IRLALVFLVCVVILAPSVTARTMAEAPSPSVLEDLSFSHCTPFILKATICVIDVIKLPVA 70
           ++L ++FLVC+ ILA  V  RT       S  +D++  +CT F  +AT C+IDV+K  + 
Sbjct: 5   LKLPIIFLVCIAILALPVMTRTTTTLDQFST-KDVASVNCTVFTFEATKCMIDVMKNSMP 64

Query: 71  PHPSCCKAIFELNDCAPEIYQHI--LDMGVIKKIC 104
           PHPSCC+AI +LNDC PE+Y+ +   D  +IKKIC
Sbjct: 65  PHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKIC 98

The following BLAST results are available for this feature:
BLAST of Lsi06G010250.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G010250.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTD6_CUCSA7.4e-3575.96Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1[more]
A0A0A0LYQ3_CUCSA1.4e-1445.37Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1[more]
A0A0A0LTE1_CUCSA1.6e-1346.32Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1[more]
BLAST of Lsi06G010250.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G010250.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210094|gb|KGN65190.1|1.1e-3475.96hypothetical protein Csa_1G263450 [Cucumis sativus][more]
gi|700210000|gb|KGN65096.1|2.1e-1445.37hypothetical protein Csa_1G212820 [Cucumis sativus][more]
gi|700210099|gb|KGN65195.1|2.3e-1346.32hypothetical protein Csa_1G263980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi06G010250Lsi06G010250gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G010250.1.CDS.1Lsi06G010250.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi06G010250.1Lsi06G010250.1-proteinpolypeptide