Lsi06G006310.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G006310.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	TATA-box binding protein
Location	chr06 : 9165076 .. 9178172 (-)
Sequence length	1318

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAAATCGGAAGGAAATAAAAAAGGCATGTCAAGAGATAAATCCCTCAGCCGCACAAAGGCTCCCCAAGAACTCCCATCCTCTCCCATATCGTTCTTCTCTCTCGAAACCAAAGCTCAAAACTCTCTCCCATTTATATAGCTCTCTCAAATAATTCGGATATAAAACTCATCGCTTTTCAAACTCTTCCCGCTTCCTCACCCATCAATCCTTCCTCATTATCGTCTAAATTTCTCTTTCCGATCGACAGGAAATTCTTCGCCCAATTCTAGGGTTTCCCATTTGCAAGAGGTCTGTATTTTGTTTTTTTTTGTGATCCACAGATCGTGTGTGTTAGGGGGGCTAGCTTTTGCGTTTTGATATAGCTTTTTGTTGGGTTTGTGTCTTCCTTTCTCAGTTGGCATCTAGGGCATGTTTTGATTAGATTTGCCTTTGTTGGTCGTTGTGGGTTGTTGTACATATCTCGAGAGGATGGGTTTTTGTATACCCCTAATGATTAGTCATAGTGGAGTGGGTTTCTATGATCTCTGTATTTCGTTTGACCTTTATCGTTAATTTGATAAGTGCAGGTGTGATTTCCGTACGTAATGTATGGATTACTATTTTCAGTTCATTAATAGGCATGGATTCTTGGGTTATTTATAATTTAACGATATTTTGTCCTGATTTTTGGGCTTGGGGGATTGAAGAAACATGAAGAATGGTGGTTTTGTTACTTTTTATTTTGTTGTAATAATTATTTTGGAGAAAGAAAGAATCTAAAGAGGGGAGTTCTGTCCTGCAGAGATTTCTTATAAGGAATGGCAGATCAAGGCTTGGAAGGAGCCCAACCCGTAGATCTTAAAAAGCATCCTTCTGGGATTGTACCTACTCTTCAGTGAGTTCTCACTGTTACAACTGCTTGTGCCTTCTGATTGTGTATGATAGCTATTTTTTGTTGATCAAATTATAGCGTTTCATCAGTATTAAATGGTGGTTATATAGTATATATATATAAGCTCCATATGAACCTCTAATATTGACCTGGTGTGATTCTTTCAAACTCTCCAGTTTTGATATATTCAAGAAGATACATCCAATCTCTTTCTCCCCCCACGTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGTGCACACACATAGGTAACACAGCTATATATTTTGCTAATATGAGAGATAGATCGAAGTTCTAAGAATCAGTTACATCCGCCAAAAATTTAATGAGTTCACAAATCTCTTATTAGTTTGAACAGTTAGAATATATAAAGTTCGTCTATACATTAATATAAAGTTAATTATGATATATCTACCAATCTCTTTCTCCTCCCATCTCTCTCTCTCCCTTGTGCGCACTCACAAGTAACACAGCTATAGATTTTGGTATTACGAGAGTTCAATCGAAGTTCTAACTTCTAAGAATGAGTTACATCCACCAAAAACTTTAATGAGTTCACAAATCTCTTATTAATTTGAATAGTTACTAAGGATTATATAAATTTAGTCTATACATTAATATAAAGATAATTCTGATATATATGGAAACTAAAAACTAAGAATTTGTCAAGATTTATGGTCTAGCATAGTCTTTGTAATATTTCCAATAATAATTCAGAGAAGATTCTCCCTTCCTGACAAAATTGTCATGTATAACTGCAATATGTGATAACTGGTAACTAAGATAAAAGCATATTCTTGCTGAATAAATTATTTTGGTAAGGACTTAGCTATGGAGCACAAACCCTTTGGTTTGGTTAATGTATTGTGATAGATACATCGACATTTGTGCCCTTGTTAAGCATAGTTGAAATGTGTCAAACATCGGTTTAAAGTTATAAACACACTTTGGACACTTGGGATTTGTGAACATTTTGAGAGTGTATTACATCATAAATTCTTTGTACAAGCATTGTTGACTTAAATTTTTTTTTTTTTTTTTTTTTTTTATTNACACACTTTGGACACTTGGGATTTGTGAACATTTTGAGAGTGTATTACATCATAAATTCTTTGTACAAGCATTGTTGACTTAAATTTTTTTTTTTTTTTTTTTTGTTAATATGTAAAATTGTTTAGGAAATTGATAAGTTGGTTTGTATGTATTTTAAATATTTTTACATGAAGTGTTGTAATCATATCATAACAGTTTTAGTACAAGTTTAATACAAACAAGGCTGGGTTGGGTTCTCTATTTGCTGTTTCAACTGCCTTTTGTGAAGATGATGCAGGCATCAAATGTCTATTTTTTTTGGTTTTACATGATTAGGTACTCCATGTATATACTATCCTTCTTTATGTTTCTTGATGAATGTACAATGTATTATATTGTTTCTAGGAACATTGTGTCAACAGTGAATCTGGATTGCAAGTTGGATCTGAAGGCCATTGCTCTCCAAGCTCGCAATGCTGAATATAATCCCAAGGCAAGTGGCTTTTTATAATAAGTCAATGTAGAGTTTGTAAATAAAATTAAAAAAAAAGGAAAAAAGCCAGTGCACTTAGTTTTGGCAATTCATTATGCACGTCTAGAATCCTAATTTTAGGGTGGAACTTTGTTGTTTCTTTTTTGCATTTGAATTTGAATTTTTAAGATTTCAGTTATTATTTCAATGAAACAGCGTTTTGCTGCTGTTATCATGAGAATAAGGGAGCCAAAAACTACAGCATTGATATTTGCATCGGGAAAGATGGTAAGTTATTTTCTATTTAATTTTTAAATGACGGGAGCTGGGCTGCAACATTGCAGTTGCTTCTAGTGATTTACTATATTTTTTATCATTGCCATGAAGAAATTGACCTTTGTTGTGTTGGACACACAAAAAAGGGTATCCTATTGTTTTGTTGGGACATGTTTAGACAACAGGTTGACTTGAAAAATGTTGATGAGAAAATAAAGAAGAAAAATTATTTAACCTAACTCATATACCAACCTTTGACTTGTCTTATCAATATTAGTCGTAAAAACCATCTGAAAGAAATTGTGGATGGAGGTATGTGTCACTCGCTATCTGTTTTGCTACTAGCACATTACATTTTTAGAATGTTAAGTTTCCAAGTTTTATAAATTTTGAAGTATTTAATAATATTGCAAAAAAAAAAAAAAGTTGTGTCCATATCCTACTATTTTAGAAATCGACGGGTTATCACATTTGTGTCCATGCTTCATAGAATGTCATGTATTTGTACTGTAACCTATTGTTCTTTTTCTTTTTTTAAACGAAAGTGATCTTTTCATTGATATAATAAAAAGAGGCAGGCTAAAACTCAAGATACAAGGTTCGAAATATAATAAGCATAGTAATCTTGGATTCTAGGACTCAGTAGGCGCACCTAGGCATCTCAACTAGGTTGACACCCTCATAGCACCCTCATCATATCCAATTACAAGATACAAAATAACAATTGGCTTGGTTATAGTGAAGAAATAAAAGCACTCCAATTAAGACAAATATCTTGAATAAAATAATTAACAAAAAAAAAACTTTGTTTGAGAGCACCAAGAAGAAGCTAACAAGCGGGTTGAACCAAACTGATTAGATCAATCAATATCCTTATTGAGAAGACTCGTTGATTTCGCTCAAACCAAATTTATGAAATCAAGGTTTTAATTGCATTCGACAAAAGTATTTGTGCATTAGAAGGTAAAATTGGACTGGCCAGTATGTGGGAAATGCTGGTTCTAATTGTCTGTCCAAAAACCCAATGCAAATTGAAGTATGAGAAAAGCTTCCTCCAACAGTTACTTGAATATGTGCAATTGAAGAACACCTGTAGGTCTTCGCCTGCTTGCTAAGCATAGGGGGCAAATGGAGGCAGGTCTTCGCTGCTTGCTAAGCATAGGGGGCAAATGGAGGCAGATAGATAATGGGATTGAAGTTTATGCTGCAAGATCTTGGAACAATTAAGTGACCCAAACATCAAAATCCAAACCAGAATGTTTATTCGTTTAGGGCTCTTAGTCTTCCAAAGAGCCTGGAAGATCTCTTTATCTAATGGGGAAGAAGAGTTCAAGTGCTTTGACAAGGACTTAACTGAAATTTTCCAGAGGAGTCCATTGACCAAAGTCTTGAATAAGGTGCTTGAGATGGTTTTTGTCTTCTAGACAGCCCAACAGTTGCTGGAATTCTGAAAGTTCTTCCTTTAGAGGCCTTCAAAACAATAAATTCCATGAGTGGATGTCTGGATCCCAATGATCACTAATACTGTCTTTAGGTAGTGTGGCAATGCGGTATGGATGAGGAAATCTCTCCTTGAAAGGATGGTTAGAACAGCAAAATCAAGCCAAAAGAAGATGTTTTTAACATTGCCCAATTTGAGAAAAGCAAGCAGCCCAAACTTATTCCAAGTCTTTGATACACTGATCCAAGGACTTCTTAGTCTTAAACCAAGCTTTCTAGAGCTATGCCAATGGTGAGGATCTACTCCATGTAGGCTCTTTACTATTTTGCACCATAAGGAGTCTTGTTCTTTTAGAAACCTCCAGTTCCATTTGAACAATAATGCCAAGTTTCTGTTTTGCTGGTTGCCCACACTAAGACCTCCACCATGCAAGGCTTTCGAGACTTTTTCCCATTTAACCAAGTGGTTCAGCTTGTTCCCTTTCTGTCCTTCCCAGAAAAAAGTTGTTCATTATCCTTTCTATTTCTGAAATTGTTGAACAAGGCATTTGGAAGATGGACATGTATTAGGTTGGCAGATTTGCCAAAACTGCACTGCACAAAGTTAGCCTTCCCCCTCTAGATAGGTTATACCTCTTCCATCGATCAAGTTTCAAATGCATCTTGTCTACGATTGGCTGTCAAAAGGATTGTTGCGTCGAATATCCACCAAGGGGTAAGCCCAAATAAATAAAAGGTAATTTTCCAGCTTTACAATTAAGCCTTGTGGAGGTAGAAGTGAGTGTATCTTCATCAATGTTGATTCCATATAAAGCTGACTTATCCCAATTAATCTTTTGACCTGAGGACCATTCAAAGAAACCAATTGTTTGTATAAGATTATCCAACATAGTTTCACCATATTTGCAAAACAAAAGGGTGTCGTTCGCAAATTGCAAAATTGACAAATGATCCTTATCCTTACCAACCAGGAAGCCTAACATTCCATTATCATATATTTTAGCAATAAAGGGATTAAGTACTTCACTTACTATGAGGAATAAAAAGGGTGATAGGGGTCACCTTGGCGAATTCCCCTTGTGGCTAGAACACGTCCTCGTCTCCCATTGATGAAGACTGAAAACTTTGGGTTACTGATGCATCCCATGATCCATACAACCCATTTTGGATGAAATCCCATCAGAGTGACAATTCTTTCAAGGAAAGTCCAATCAACACGGTCGAATGCCTTCTCTAAACCCAGTTTCAGAATCCATCCTTTCTTCTTCTTAGCACGATAATCTTCTACAACTTCATTGGCAATGAGGAAGCTATAAGGACTGGGTCAAGTATTTGCCTTCCACTTATGATAGCATTTTGTGTGTTTGAGATGATATTAGGCATTACCTTTTTCATCCGTTTGGCTAGGACTTTGGTTAGAATTTTGTTTGGGAAGTGGTAAAGCTTATTGGCCTAAAGTCTTTAACATAAAGCGATTCTTCCTTCTTTGGAATGAGGCAAATGAAATTCTCCTTAATGCAAACATTTAACCTCCCATTTGTGTGAAATTCCAAACATTTTCCGAAAATAATCTTTGAAGCTAGTTCAATGTTTAAGAAAAAATTCTATTGTCCATCCATCAGGGCCGGGGCTTTGTTTTTTTGATTTCCTCATCTTGAAAAGGAGCAACTAAAGAGGCGTTCTGATCTGCTGTTACTTGCTTCCACTGAATATCATAAGGGATAATCCGTGGGCCAAGGATTTTGTTATGCAAGGAAGAAAAACAGCTCAAAATTTCTGACTCAATTTTCCGAAATGAGTGCACAGCTTCCCCAATATTTGATAGACGTTTTGTAATCAAGTTTCTTCTTCTCTTTGCTGAAAGAAATCTATGAAAAAAATTTAGCATTTTCCTCCCCCAACTTGCCAATTCAACTTGCTTTTTTGAATTAAGTTCCTTTCTTCCAAAGGACATAAATTCATCTGGTACCCTTTGATGGCCAGGCAGATATCCAACTGAAACGGTGAGAGAACTTCCTTTTCAGCCTTTGAGTCGAAGAATTTCAGTTCTGATATTAAGTCCCCTTTATGCTTCCTTTCTTTTTCAAAATCTGTGAACCAAGCCTTCAAATTTTCTTTCAATTTTTGCAGCTTTAAACTAATTTTGAAACTAGCCCAACCACTGGATTGATCAACATCTAAGGATCTCTTGATGACCTTTGAACAATCAGCAATTGTCATCCAACTATTGCAAAAACGAAATGGGGAGTTAATTGCTCCAGCTTCTAGCAACAAAGAAAAGTGATCTTAGAAAACTCTTGCCTTTTTGTTTCAAATAATTCATCCCATTCCTTATCGAATAAGAATCGATCAATAAGAGCATGTGAGTTTGAGCTTACATTTCTTGACCAAGTGAAATTTCTATTGGAGAGGGGAATTTCTAGCAGCCCTGCCTCTTCTATGACTTGATTGAATTTCCTCATCCCTCTTGTAACTCATCCTATAGGAAATCTCTCATGATTTCATCTAGTTATGTTGAAGTCTCCCCTTATACACCATAGTTCAGTGCCTTAATGAGATAAGGATGTGAGCTCTGCCCAAAGAAAACGCCGTTCTCGGTAATCTGTAGCTCCATAAACATTAGTCACCCAACAAATGTTCTTACAAAGAGTCATGGATTTGATAGAAAGTGAATAGCCACCCTTGAGAAATTCCAAAGGAGTGATTTTACTTTCATATCCCACATGAGAAGCAAACCTCTGGATTTGCCATAATCTTCCACCGAGGTCCAACCTATACCATTTGAGCTCCATAGGAACTTGAAAAGACTCTGTTCATTTCCCCAGCTAGGTCTTCGTTGTTGTCTTGAGGAATCAACGTATGAAGCATTATACTTTCCTTAAGCATTGATAAGAAGGAATGCCATCCTTGTTTATTCCTCCCCGCTGGAATATGGAAATTCATTCTTCCTCCTGAGGAAGACCAAATAGCGTATTCCATGAACCAACCTTCCGTGGAATGAAATTTGGCAAGTCGAGAGATACCACGATCGGTTCTGGTTTTCTTTTGAGAAGAAAATTTGAGTCTGGTCTTTAAGCATGGTGTTTAAACCTTCCATGAGCCACTCCATCATTTGAGACGAAATCTTAACAATTTGACTTCTTTCCAAGTCTTCTATTGAAAAGCCTGAGTCGTCGGACCAAACACATAAATGTCGGTTGTTAATATTGCAGCTTTTGCTTTCCATAATTGATAACACGAGCTTGGTAATTATGTATGTGTAGAGGTGAAAAGACGATGATGTTGAAGTGAATGTTTTGCTGATCGGAAGAGAGAGGGTCACCGGCGCTATGGTCGGAAGAGGGGAAGGTGTGGAGAGAGGAGAGAGGAAAGAAGGGAGAGCATACTTACCTTTTTGATTAAATTCAAAAGGTAAAAGAACCAACAAGGAATATACATGGGATGTGCTGATTAATGTTGATGTCTTAATGAGACAGGAGGGAAAAATTGCTAATTTGATTAGGGGCATAATCCTGTTCCGTATCTTTGTGAACCCATGTCACAATCATATTTTATTATATAATTTAATAATAACCTCAAAACCACACGTTATTAAGACAATATGACATTATGATTGAAGGTCAAAGATTCGTATCTCACCCACATGGAGTTGTACTTCCAAAAAAAAAAAAAAAAACCTCAAACCAATATTTATGATTTATTCGGTCAATCTTCTTTTCATGGACCCATGTTAAACAGGTACGTTGTTCAATTAATTCCCCCAAGAATGCATTGGAACTTAATGAAATTTGTTTGTATTGAAGTTAAGTTGAGTGGGAATTTTTGTGTCCTTAATGAGCCATTATAGCTATATGAATGCATTCTTTTCCTCGTAAACTGGTTGCTGTATTTGAAGAGTATCTTGTTTTAGCTATTCAGATGTATGATGTGGTGTAGGTTTGTACTGGAGCGAAGAGTGAACAACAATCCAAATTAGCTGCAAGAAAGGTATTTACTTTCTTTCCATTGTTTTGTCTTAGTGTGTAGAGGTTGTCAAATCCTCTCTCTACACATTGGTTGTAGAATATCAATGATAGAATCCTGCAGCTTGAGAAGGTCTACTCGATTTTATCTTAAACTGTTATCATTTGGTTCATTAAATTTTCAAAGGTCTGATTAGTTGTGTCATGCCCTGATTCAGTGACTTAATTTGAATTCTGAAGCTTAAATCTTATAGATTTCATTTTATAAGTGTTCCAGAAAATTAGAGGTATGAGCTGAGATATGGTTGTTAGGTATTAGGGGTTGAGAATAGTTGATAGTTGAAAGTAATTTGTACTTTACATCTTGTTGTAATGTACGAATAGTTATTTGCATATTTAACTGTTGACATATCATCTGAGATTAATCGTCATAGTGGAGCCACTAAGCACGATCAGTTGATGCTCAGTTTATTGATTTTCTTATTATCCTAAAAGTTGTTGGGCATCTCATTCAGCAGCACCCTTCTTTTTAATATGAAGCTTATAAAAAATATAATATGAATTCTTTATCTGATATTGTACCTTATTTCTACTTTCCAGTATGCCCGTATTATCCAAAAACTCGGTTTTCCTGCCAAGTTTAAGGTATGTGCTTCTATCCTCCTCATTTGCAGGGCGCTGCAATTGCCACCAGAAACTACTTTTATATTTCCCTTTTTGTAAAAAAAAATGAAAACATCTTTCAGTAAGAATGAAAGAAGACAAAAGATAGTTTAAATTCAAAAACTTGATTCTTAGAACTAAGATTATTTAGTGTATATTCTCATGCATTTTTTAATCTCATGCAGGATTTTAAGATTCAGAATATTGTTGGCTCATGTGATGTTAAGTTCCCCATAAGGCTTGAGGGTCTTGCTTATTCACACGGAGCCTTTTCAAGTGTAAGCTTAAGATCTATATCTTGATCTCTATGTGCATTCTATTGGATTGTTTCTATTACCTCATTATTAGATTTGTCAGATTCTGGAGGTCCACAGTTAGTCAAGCATTTTTCTGCTAGAAATCTTTGTCTCTTCTGAAGATTTTCTTTTGGGGGCATGACTTGAATTGAATGTGTATGTGTATGCTTGTGCTTGACTATGATTTCTCCAAAATTTTCAAGTGATTCCGTGTTTTCGTCTTTTCATGGGGAACTAGCTACGATGATTTTTCATGTCAACAAGTTTGAGATGGTATTTAAGTTTGTGGTGTTTTGAGTGATACTAGTGTTTACTGGTGATGAATGAAATCCCGAGAGTTTATATTATTTTCAATGTTTAAAGTACTTCATTATAATTAACATTCACTATATATTTTATCAGGTTCAACAATTTTTTAGTTGTTGAACTTCTTATATATGTGTAACGTAACTTCATTATTAAAATTGCTATCTCCATTTTTTTCAGTACGAACCAGAGTTATTCCCTGGATTGATATATCGGATGAAACAACCAAAGATTGTGCTTCTCATTTTCGTCTCTGGAAAAATAGTTCTAACTGGGGCAAAGGTATAAATTTGATTGCCATTTTTGTGCTTGTTAAGGTGGATGTCTGAAATATTATTTGAATATCGAAGATATATTAGTAATTACCCAAAAGTTTGTTAGCCGGAGGTGGTATGAATAGGGTGTCGGTGAAGGCATAATGGTTTAACTATTTTAGTTTGGGCTTGAGTTTATTCAGTAGGGAGGTCTCCAAGTTCCTTGATCGAATATTTTACTGGTCAATACAATTCTCTGATTTCAATATAATGCGTAATTATATGCCGTCAGTTATCAAAGATTCAATTAGCAGTCAATGAGTTTAGTATGATTTATGGTCAGTTTTGACCAATCTTGAGATAACCCTTAGAATAACAGAATTACAATTACAGGATTGCATGACCTATTTGCCGTGTTCTAGAAAGTCCTCATAGGCGTGCGCTTAGGCACTAGGTGCAGGTTAAGGCAAGGCACACAAAAGATGGCACACATTAGGTGTGCTCCTTCTGTGAAGCCCTGGACCTTGGAGCTTTCTCATTACTTAAAAAGATAATAATTATTAGAGTTTTCGTCTATATTAATAAAAAGGATAATATTTACCTAAGTCTAAATGCAAATTTCCCTGCATTTAGGTTCTTTTTTTTCCTCCTCATATTCAACCATGTTTTCTTTTCTTTATGGAGTACTTTTATACATGGATAGTGCACATCACACAAAAATCTGTGCTTTTTTTTTTTTTTTTTGGCACCTTGCACTTAAGTTTCAAAAACTATTGCGCTTTATTGCGCCGGAGCTTTAAAAACACACAGCCTATCTGTATAGTTACTGTCAGAACTACAGTCATCTTTGATCTTGAATCCTTCAGGTGAGAGAGGAGACATATACAGCTTTTGAGAACATATACCCAGTGCTTACAGAGTTCAGGAAAAACCAGCAATGGTAAGATGCTTCAACTGAAACTCCCAAGAGTTTAATATGGGTGCCAATATAAATCTTTGTGCAATTTTTTCTTCTCCTATATGAACTGGATTTCTTATTAGCATGTGGATCTGAGTCTGAATTTTGTGCTGGAAGAAATGAATAATCTAAACTCATTCCAGAGTAAAACGAGCAAGCCTATTGCTCGTTGTTTTGTCTTAATGAACATCTGTTTGCAGATTTGTTGGTTTCGTCGTTTGTCTTAAGAATAATCTGTTTGCAGATTTTTGGTTTCGGACTAGCCATCTTGGAAGTTGATTTTCCTTCATCCTTGGAGAACAAACTGACTGGCACATAGACACAAGGTAGCCGGAAAGAAGTGTATTTATCGAGTGATTTCTTCCAGTTTGAAGATATATGAAAGACTTTCGGTTTTTGGCCTAAAATGGTGGGTCGAGTCTGGTGAATCGGCATCTTCACTTTTAGTGTCTGTCTCTATGTGATAAAAAAGTGGAGCGAAGCTATGGAACTTTTTTCTTTTTTCTTTTTTTTTTTTAATCTTTTTTTTTGATATATCTGATATTATGTAATCAAAGTGGGGGATTGTGTATAGAAGAATTTTTGTTCCAACAACTGACACTAGACAATTATGCAATTTATACTAAGCTTCACACAAGGTAATGTGATATAGTTCTACTCTATAAATAGAATAAATTAGAAATTATTTGAGATTTGAATAGTGAAAATATTGATGATTCTATTTGGCGATCATCAAATCCAAAACTGTGAAATTTGAACCTTTATTTACTTTTTGTTTTGAAGTTATAACAACTTAATTAGTAAAGTAATTATAACAACTTAATTAGTAAAGTAAATCTGTTACGGCTCAGTGAGCTTGATTAACTGTTCTTAGCATGGACTTCTTTCTTAGAGGTTTCGATCTCTCAATCTTGCCGTCTTTGTACTAGATAAAAAAAGTCTGTTTTGGCTCTTATCACCATTTAATGTTCTATGAAATTTTATGATAAAAGATACTTATGGTAAAAAGTGGATTAATTTATAAATTAAGGTCTTATTATTTGAAAAAAGTTAAAATTTAATTCAATATATATTTATGAGTGTTTTATCACATCATAAAGATTATTTATTTGGGCATTATCAAATCATAATGATGAAAATTTATTGTAGAAATCAAAATTTTAGTTTAACGAAAAAGTAGTGCTTTTGAAGAAGCTTAAATTTAACAAGTCAGCATTATCTCATACAGATACGAATTATGATTGTAATTAATGATGAAAACACTAGCTATCCACATCTTTCGATATTTCTTGTTAAGTCATACTTAAAAGTGTGGGAATGGCAGTTTAAAATTAGTAGAAACGTGAGTAACTTAAAAATGTACAATTTTCTAAGCATTTATTTATTTTTAAAGATAAACCTACATAAAACTAAAAAGTTTAAAATATTGATGTTGACAGAAATGTCATGTCTCAATTTTAAGAGAGTTGGCTCTAAGATTTCATCCTTGTTGGGCTTCGATGTGGGTGCTCAATGGCCTTGGCCTCCGACCCGCTTCCCTTCAGTTAGGTCTCGATCTTGTTCGAGCAATCCTGAATAAGAGTCTTTGCACCGGTGTGGTGTTAAGCTTATTGCATTCCAATGCTTAAGATATCACTAGGAGTGGCTAATTCAACTAAGCATAGAAAGAAGTAAGGTTGGATCTTTTCTTTGGAGATTACTTACTCATCCCTTTGAAGTGGTCGAATGAGACTATTTATAACTAGACCTCTGACATATGTCCATGATTGCATGTGATGACAAGGTTATCAAGGACGTTTCTGGCTTTTGAGGTTGCAAGGTACCAGTCCGACCTCAGCCCGTTTATTTTTCGATTGGTATATATGCTTATTGGCTTGGCTGGTTGACTCAAACCTAAGGCACTGACCTTTTTCTTTTGGGACTGGTGTTCCCCTATGTCCTTTCCTGGTACCTTTTAGGCTTGTGCTCGTCTGCGAGCTTTGGGCCTTGCCTTAGGCAACCTTCAGCATTGGCCCTTCGATGAGCTAGCTAGTAGTCTTGTCGAAGGTCAGGTCGCCGACTTCTTGAGGGGTGATGCAATCTTTCGCACGTGGCAAAGGTAATTAATGCTCTTCATATTAGTTATGCTTTCGAGTATGAACAGGCAATTGTGTCAGTCCCACCTCTCGAACGCCAATTTTCGTTCAAGCGTTTGTTGTTCGTCGAATGGTAGTCCATTTAATGGTTACCATTGATCGTAGATTTCCTATAAAAAATGACCTTTGGTCGTGGCAGTAGATTCATTTTTTTCATGTCTAACTTTGTTAGACATTTTGTTGATGTCCTTTCTAGGCAGCTTGGAGAATATGAGGGAGCGATATCGCATCGTCCTCTTTATCACTTTTCATCTGCCCAAACTAGAGGAGAGCATCGCACAACCTCCTTCCTTATTGGTGAGGTTGGGATGCACTACCACATGTTTGAGGGTGGCGTTAGTTTCCGTTCTCTCAGTGCTCTTTACCTACAAGGGATTGCTCTAGCTCAGCTTGCCCCCCATGGAGCCTAG

mRNA sequence

GCAAAATCGGAAGGAAATAAAAAAGGCATGTCAAGAGATAAATCCCTCAGCCGCACAAAGGCTCCCCAAGAACTCCCATCCTCTCCCATATCGTTCTTCTCTCTCGAAACCAAAGCTCAAAACTCTCTCCCATTTATATAGCTCTCTCAAATAATTCGGATATAAAACTCATCGCTTTTCAAACTCTTCCCGCTTCCTCACCCATCAATCCTTCCTCATTATCGTCTAAATTTCTCTTTCCGATCGACAGGAAATTCTTCGCCCAATTCTAGGGTTTCCCATTTGCAAGAGAGATTTCTTATAAGGAATGGCAGATCAAGGCTTGGAAGGAGCCCAACCCGTAGATCTTAAAAAGCATCCTTCTGGGATTGTACCTACTCTTCAGAACATTGTGTCAACAGTGAATCTGGATTGCAAGTTGGATCTGAAGGCCATTGCTCTCCAAGCTCGCAATGCTGAATATAATCCCAAGGCAAGTGGCTTTTTATAATAAGTCAATGTAGAGTTTGTAAATAAAATTAAAAAAAAAGGAAAAAAGCCAGTGCACTTAGTTTTGGCAATTCATTATGCACGTCTAGAATCCTAATTTTAGGGTGGAACTTTGTTGTTTCTTTTTTGCATTTGAATTTGAATTTTTAAGATTTCAGTTATTATTTCAATGAAACAGCGTTTTGCTGCTGTTATCATGAGAATAAGGGAGCCAAAAACTACAGCATTGATATTTGCATCGGGAAAGATGGTTTGTACTGGAGCGAAGAGTGAACAACAATCCAAATTAGCTGCAAGAAAGTATGCCCGTATTATCCAAAAACTCGGTTTTCCTGCCAAGTTTAAGGATTTTAAGATTCAGAATATTGTTGGCTCATGTGATGTTAAGTTCCCCATAAGGCTTGAGGGTCTTGCTTATTCACACGGAGCCTTTTCAAGTTACGAACCAGAGTTATTCCCTGGATTGATATATCGGATGAAACAACCAAAGATTGTGCTTCTCATTTTCGTCTCTGGAAAAATAGTTCTAACTGGGGCAAAGGTGAGAGAGGAGACATATACAGCTTTTGAGAACATATACCCAGTGCTTACAGAGTTCAGGAAAAACCAGCAATGGCAGCTTGGAGAATATGAGGGAGCGATATCGCATCGTCCTCTTTATCACTTTTCATCTGCCCAAACTAGAGGAGAGCATCGCACAACCTCCTTCCTTATTGGTGAGGTTGGGATGCACTACCACATGTTTGAGGGTGGCGTTAGTTTCCGTTCTCTCAGTGCTCTTTACCTACAAGGGATTGCTCTAGCTCAGCTTGCCCCCCATGGAGCCTAG

Coding sequence (CDS)

ATGAAACAGCGTTTTGCTGCTGTTATCATGAGAATAAGGGAGCCAAAAACTACAGCATTGATATTTGCATCGGGAAAGATGGTTTGTACTGGAGCGAAGAGTGAACAACAATCCAAATTAGCTGCAAGAAAGTATGCCCGTATTATCCAAAAACTCGGTTTTCCTGCCAAGTTTAAGGATTTTAAGATTCAGAATATTGTTGGCTCATGTGATGTTAAGTTCCCCATAAGGCTTGAGGGTCTTGCTTATTCACACGGAGCCTTTTCAAGTTACGAACCAGAGTTATTCCCTGGATTGATATATCGGATGAAACAACCAAAGATTGTGCTTCTCATTTTCGTCTCTGGAAAAATAGTTCTAACTGGGGCAAAGGTGAGAGAGGAGACATATACAGCTTTTGAGAACATATACCCAGTGCTTACAGAGTTCAGGAAAAACCAGCAATGGCAGCTTGGAGAATATGAGGGAGCGATATCGCATCGTCCTCTTTATCACTTTTCATCTGCCCAAACTAGAGGAGAGCATCGCACAACCTCCTTCCTTATTGGTGAGGTTGGGATGCACTACCACATGTTTGAGGGTGGCGTTAGTTTCCGTTCTCTCAGTGCTCTTTACCTACAAGGGATTGCTCTAGCTCAGCTTGCCCCCCATGGAGCCTAG

Protein sequence

MKQRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQWQLGEYEGAISHRPLYHFSSAQTRGEHRTTSFLIGEVGMHYHMFEGGVSFRSLSALYLQGIALAQLAPHGA

Homology

[Close]

BLAST of Lsi06G006310.1 vs. Swiss-Prot
Match: TBP_MESCR (TATA-box-binding protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.8e-76
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AKVREETYTAFENIYPVLTEFRKNQQ
Sbjct: 175 AKVREETYTAFENIYPVLTEFRKNQQ 200

[Close]

BLAST of Lsi06G006310.1 vs. Swiss-Prot
Match: TBP_SOYBN (TATA-box-binding protein OS=Glycine max GN=TBP1 PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 8.9e-76
Identity = 143/146 (97.95%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIR+PKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AKVR+ETYTAFENIYPVLTEFRKNQQ
Sbjct: 175 AKVRDETYTAFENIYPVLTEFRKNQQ 200

[Close]

BLAST of Lsi06G006310.1 vs. Swiss-Prot
Match: TBP_SOLTU (TATA-box-binding protein OS=Solanum tuberosum GN=TBP PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.5e-75
Identity = 142/146 (97.26%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAY+HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYAHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AKVR+ETYTAFENIYPVLTEFRKNQQ
Sbjct: 175 AKVRDETYTAFENIYPVLTEFRKNQQ 200

[Close]

BLAST of Lsi06G006310.1 vs. Swiss-Prot
Match: TBP2_ORYSJ (TATA-binding protein 2 OS=Oryza sativa subsp. japonica GN=TBP2 PE=1 SV=2)

HSP 1 Score: 282.3 bits (721), Expect = 4.4e-75
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 58  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 117

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 118 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 177

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AKVR+ETYTAFENIYPVLTEFRK QQ
Sbjct: 178 AKVRDETYTAFENIYPVLTEFRKVQQ 203

[Close]

BLAST of Lsi06G006310.1 vs. Swiss-Prot
Match: TBP2_MAIZE (TATA-box-binding protein 2 OS=Zea mays GN=TBP2 PE=2 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 5.7e-75
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AKVREETYTAFENIYPVL+EFRK QQ
Sbjct: 175 AKVREETYTAFENIYPVLSEFRKIQQ 200

[Close]

BLAST of Lsi06G006310.1 vs. TrEMBL
Match: A0A151U2X0_CAJCA (TATA-box-binding protein OS=Cajanus cajan GN=KK1_006271 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.3e-75
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVR+ETYTAFENIYPVLTEFRKNQQW
Sbjct: 175 AKVRDETYTAFENIYPVLTEFRKNQQW 201

[Close]

BLAST of Lsi06G006310.1 vs. TrEMBL
Match: A0A068VES6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007807001 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.3e-75
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 56  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 115

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 116 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 175

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVR+ETYTAFENIYPVLTEFRKNQQW
Sbjct: 176 AKVRDETYTAFENIYPVLTEFRKNQQW 202

[Close]

BLAST of Lsi06G006310.1 vs. TrEMBL
Match: A0A151RJE7_CAJCA (TATA-box-binding protein OS=Cajanus cajan GN=KK1_035923 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.0e-75
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 66  QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 125

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 126 IQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 185

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVR+ETYTAFENIYPVLTEFRKNQQW
Sbjct: 186 AKVRDETYTAFENIYPVLTEFRKNQQW 212

[Close]

BLAST of Lsi06G006310.1 vs. TrEMBL
Match: A0A068VFV7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00012409001 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.2e-75
Identity = 144/147 (97.96%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 58  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 117

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAY+HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 118 IQNIVGSCDVKFPIRLEGLAYAHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 177

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVR+ETYTAFENIYPVLTEFRKNQQW
Sbjct: 178 AKVRDETYTAFENIYPVLTEFRKNQQW 204

[Close]

BLAST of Lsi06G006310.1 vs. TrEMBL
Match: M0W8M2_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.2e-74
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVREETYTAFENIYPVLTEFRK QQW
Sbjct: 175 AKVREETYTAFENIYPVLTEFRKVQQW 201

[Close]

BLAST of Lsi06G006310.1 vs. TAIR10
Match: AT1G55520.1 (AT1G55520.1 TATA binding protein 2)

HSP 1 Score: 269.2 bits (687), Expect = 2.2e-72
Identity = 136/146 (93.15%), Postives = 140/146 (95.89%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSE  SKLAARKYARI+QKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AK+REETYTAFENIYPVL EFRK QQ
Sbjct: 175 AKMREETYTAFENIYPVLREFRKVQQ 200

[Close]

BLAST of Lsi06G006310.1 vs. TAIR10
Match: AT3G13445.1 (AT3G13445.1 TATA binding protein 1)

HSP 1 Score: 265.4 bits (677), Expect = 3.1e-71
Identity = 133/146 (91.10%), Postives = 140/146 (95.89%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSE  SK+AARKYARI+QKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AK+R+ETY AFENIYPVL+EFRK QQ
Sbjct: 175 AKMRDETYKAFENIYPVLSEFRKIQQ 200

[Close]

BLAST of Lsi06G006310.1 vs. NCBI nr
Match: gi|1012362443|gb|KYP73626.1| (TATA-box-binding protein [Cajanus cajan])

HSP 1 Score: 290.0 bits (741), Expect = 3.4e-75
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVR+ETYTAFENIYPVLTEFRKNQQW
Sbjct: 175 AKVRDETYTAFENIYPVLTEFRKNQQW 201

[Close]

BLAST of Lsi06G006310.1 vs. NCBI nr
Match: gi|661876675|emb|CDP19330.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 290.0 bits (741), Expect = 3.4e-75
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 56  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 115

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 116 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 175

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVR+ETYTAFENIYPVLTEFRKNQQW
Sbjct: 176 AKVRDETYTAFENIYPVLTEFRKNQQW 202

[Close]

BLAST of Lsi06G006310.1 vs. NCBI nr
Match: gi|1012331191|gb|KYP42679.1| (TATA-box-binding protein [Cajanus cajan])

HSP 1 Score: 289.3 bits (739), Expect = 5.7e-75
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 66  QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 125

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 126 IQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 185

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVR+ETYTAFENIYPVLTEFRKNQQW
Sbjct: 186 AKVRDETYTAFENIYPVLTEFRKNQQW 212

[Close]

BLAST of Lsi06G006310.1 vs. NCBI nr
Match: gi|661877589|emb|CDP18578.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 288.9 bits (738), Expect = 7.5e-75
Identity = 144/147 (97.96%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 58  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 117

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAY+HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 118 IQNIVGSCDVKFPIRLEGLAYAHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 177

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVR+ETYTAFENIYPVLTEFRKNQQW
Sbjct: 178 AKVRDETYTAFENIYPVLTEFRKNQQW 204

[Close]

BLAST of Lsi06G006310.1 vs. NCBI nr
Match: gi|743886036|ref|XP_010910053.1| (PREDICTED: TATA-box-binding protein isoform X2 [Elaeis guineensis])

HSP 1 Score: 288.1 bits (736), Expect = 1.3e-74
Identity = 144/147 (97.96%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVR+ETYTAFENIYPVLTEFRK+QQW
Sbjct: 175 AKVRDETYTAFENIYPVLTEFRKSQQW 201

The following BLAST results are available for this feature:

BLAST of Lsi06G006310.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TBP_MESCR	1.8e-76	99.32	TATA-box-binding protein OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]
TBP_SOYBN	8.9e-76	97.95	TATA-box-binding protein OS=Glycine max GN=TBP1 PE=2 SV=1	[more]
TBP_SOLTU	1.5e-75	97.26	TATA-box-binding protein OS=Solanum tuberosum GN=TBP PE=2 SV=1	[more]
TBP2_ORYSJ	4.4e-75	97.95	TATA-binding protein 2 OS=Oryza sativa subsp. japonica GN=TBP2 PE=1 SV=2	[more]
TBP2_MAIZE	5.7e-75	97.95	TATA-box-binding protein 2 OS=Zea mays GN=TBP2 PE=2 SV=1	[more]

BLAST of Lsi06G006310.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151U2X0_CAJCA	2.3e-75	98.64	TATA-box-binding protein OS=Cajanus cajan GN=KK1_006271 PE=3 SV=1	[more]
A0A068VES6_COFCA	2.3e-75	98.64	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007807001 PE=3 SV=1	[more]
A0A151RJE7_CAJCA	4.0e-75	98.64	TATA-box-binding protein OS=Cajanus cajan GN=KK1_035923 PE=3 SV=1	[more]
A0A068VFV7_COFCA	5.2e-75	97.96	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00012409001 PE=3 SV=1	[more]
M0W8M2_HORVD	1.2e-74	98.64	Uncharacterized protein OS=Hordeum vulgare var. distichum PE=3 SV=1	[more]

BLAST of Lsi06G006310.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55520.1	2.2e-72	93.15	TATA binding protein 2	[more]
AT3G13445.1	3.1e-71	91.10	TATA binding protein 1	[more]

BLAST of Lsi06G006310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012362443\|gb\|KYP73626.1\|	3.4e-75	98.64	TATA-box-binding protein [Cajanus cajan]	[more]
gi\|661876675\|emb\|CDP19330.1\|	3.4e-75	98.64	unnamed protein product [Coffea canephora]	[more]
gi\|1012331191\|gb\|KYP42679.1\|	5.7e-75	98.64	TATA-box-binding protein [Cajanus cajan]	[more]
gi\|661877589\|emb\|CDP18578.1\|	7.5e-75	97.96	unnamed protein product [Coffea canephora]	[more]
gi\|743886036\|ref\|XP_010910053.1\|	1.3e-74	97.96	PREDICTED: TATA-box-binding protein isoform X2 [Elaeis guineensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006352	DNA-templated transcription, initiation

Vocabulary: **INTERPRO**
Term	Definition
IPR012295	TBP_dom_sf
IPR000814	TBP

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G006310	Lsi06G006310	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G006310.1	Lsi06G006310.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G006310.1.CDS.7	Lsi06G006310.1.CDS.7	CDS
Lsi06G006310.1.CDS.6	Lsi06G006310.1.CDS.6	CDS
Lsi06G006310.1.CDS.5	Lsi06G006310.1.CDS.5	CDS
Lsi06G006310.1.CDS.4	Lsi06G006310.1.CDS.4	CDS
Lsi06G006310.1.CDS.3	Lsi06G006310.1.CDS.3	CDS
Lsi06G006310.1.CDS.2	Lsi06G006310.1.CDS.2	CDS
Lsi06G006310.1.CDS.1	Lsi06G006310.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G006310.1.five_prime_UTR.3	Lsi06G006310.1.five_prime_UTR.3	five_prime_UTR
Lsi06G006310.1.five_prime_UTR.2	Lsi06G006310.1.five_prime_UTR.2	five_prime_UTR
Lsi06G006310.1.five_prime_UTR.1	Lsi06G006310.1.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000814	TATA-box binding protein	PRINTS	PR00686	TIFACTORIID	coord: 16..34 score: 5.3E-44coord: 106..122 score: 5.3E-44coord: 87..102 score: 5.3E-44coord: 63..79 score: 5.3
IPR000814	TATA-box binding protein	PANTHER	PTHR10126	TATA-BOX BINDING PROTEIN	coord: 3..145 score: 1.9E
IPR000814	TATA-box binding protein	PFAM	PF00352	TBP	coord: 3..51 score: 3.7E-18coord: 60..142 score: 5.6
IPR012295	Beta2-adaptin/TBP, C-terminal domain	GENE3D	G3DSA:3.30.310.10		coord: 2..55 score: 1.9E-25coord: 56..144 score: 1.3
None	No IPR available	PANTHER	PTHR10126:SF23	SUBFAMILY NOT NAMED	coord: 3..145 score: 1.9E
None	No IPR available	unknown	SSF55945	TATA-box binding protein-like	coord: 60..146 score: 4.55E-31coord: 3..63 score: 6.44