Lsi06G005320.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G005320.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Viral movement protein
Location	chr06 : 6568109 .. 6568855 (+)
Sequence length	747

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACCTTTTTCAATCCATGTTTGAGCTCAAACTTTGGAGGAGGAAGTCATGCTTTAGATAGTGAAGAATACATCAAAAAAGGGAACAATCTATTGAAATGGAAGATCCCAAAAGTTCCCACAACCAAAATCTACAAAAGAAAGTCATTCACTTTCTTCTCTGATCCATCCATCAAAACCAAAGAAGAAACAATGTCTTGTGAAAATGGGAGCCAAGGTTTTAGGTTAATATCTGAAAATCCCTTCATGGTTGGTCTCAATGACAAAAGATTCTACTCCATGTTGAATGTTGGGATGATTCAAATTGGTGTAAAAACTTTGACCACAAAAATACCTTCAAATGCTTCAATTATTCTATGTGTTTTTGACACTAGAAATGACAATTTTGAAAATTCAATTTTGGGGTTGGTGGAATCAAATCTAAGTGATGGTCCTATGTTTTTCAACATATTTCCAAACATTACAATGTCTTTGTTTCATCCTAAGTTGTCGGAGTCTTTGGTTTTGATTGCTATTGTTCAAGGTTTTGAGCAGCTTCCTGAAGGGACAAAACCAATTAGTTTAATGTGGAGGACATGTTACAAGCTACAAGGCAGTGATTTGCCAGATGCTTTGCTTGAGAGCCCACAAGGCAAAACTGTGTTTTTTCAAACAGATTTTGAGAAGTCCGAGGTTGCTGTCCAGAAGGTTTCAAAATGGGATGAAGTTGTTTGCAAAGTTAGGAGTATTATAATGAAGCAGTAA

mRNA sequence

ATGCCAACCTTTTTCAATCCATGTTTGAGCTCAAACTTTGGAGGAGGAAGTCATGCTTTAGATAGTGAAGAATACATCAAAAAAGGGAACAATCTATTGAAATGGAAGATCCCAAAAGTTCCCACAACCAAAATCTACAAAAGAAAGTCATTCACTTTCTTCTCTGATCCATCCATCAAAACCAAAGAAGAAACAATGTCTTGTGAAAATGGGAGCCAAGGTTTTAGGTTAATATCTGAAAATCCCTTCATGGTTGGTCTCAATGACAAAAGATTCTACTCCATGTTGAATGTTGGGATGATTCAAATTGGTGTAAAAACTTTGACCACAAAAATACCTTCAAATGCTTCAATTATTCTATGTGTTTTTGACACTAGAAATGACAATTTTGAAAATTCAATTTTGGGGTTGGTGGAATCAAATCTAAGTGATGGTCCTATGTTTTTCAACATATTTCCAAACATTACAATGTCTTTGTTTCATCCTAAGTTGTCGGAGTCTTTGGTTTTGATTGCTATTGTTCAAGGTTTTGAGCAGCTTCCTGAAGGGACAAAACCAATTAGTTTAATGTGGAGGACATGTTACAAGCTACAAGGCAGTGATTTGCCAGATGCTTTGCTTGAGAGCCCACAAGGCAAAACTGTGTTTTTTCAAACAGATTTTGAGAAGTCCGAGGTTGCTGTCCAGAAGGTTTCAAAATGGGATGAAGTTGTTTGCAAAGTTAGGAGTATTATAATGAAGCAGTAA

Coding sequence (CDS)

ATGCCAACCTTTTTCAATCCATGTTTGAGCTCAAACTTTGGAGGAGGAAGTCATGCTTTAGATAGTGAAGAATACATCAAAAAAGGGAACAATCTATTGAAATGGAAGATCCCAAAAGTTCCCACAACCAAAATCTACAAAAGAAAGTCATTCACTTTCTTCTCTGATCCATCCATCAAAACCAAAGAAGAAACAATGTCTTGTGAAAATGGGAGCCAAGGTTTTAGGTTAATATCTGAAAATCCCTTCATGGTTGGTCTCAATGACAAAAGATTCTACTCCATGTTGAATGTTGGGATGATTCAAATTGGTGTAAAAACTTTGACCACAAAAATACCTTCAAATGCTTCAATTATTCTATGTGTTTTTGACACTAGAAATGACAATTTTGAAAATTCAATTTTGGGGTTGGTGGAATCAAATCTAAGTGATGGTCCTATGTTTTTCAACATATTTCCAAACATTACAATGTCTTTGTTTCATCCTAAGTTGTCGGAGTCTTTGGTTTTGATTGCTATTGTTCAAGGTTTTGAGCAGCTTCCTGAAGGGACAAAACCAATTAGTTTAATGTGGAGGACATGTTACAAGCTACAAGGCAGTGATTTGCCAGATGCTTTGCTTGAGAGCCCACAAGGCAAAACTGTGTTTTTTCAAACAGATTTTGAGAAGTCCGAGGTTGCTGTCCAGAAGGTTTCAAAATGGGATGAAGTTGTTTGCAAAGTTAGGAGTATTATAATGAAGCAGTAA

Protein sequence

MPTFFNPCLSSNFGGGSHALDSEEYIKKGNNLLKWKIPKVPTTKIYKRKSFTFFSDPSIKTKEETMSCENGSQGFRLISENPFMVGLNDKRFYSMLNVGMIQIGVKTLTTKIPSNASIILCVFDTRNDNFENSILGLVESNLSDGPMFFNIFPNITMSLFHPKLSESLVLIAIVQGFEQLPEGTKPISLMWRTCYKLQGSDLPDALLESPQGKTVFFQTDFEKSEVAVQKVSKWDEVVCKVRSIIMKQ

Homology

[Close]

BLAST of Lsi06G005320.1 vs. TrEMBL
Match: A0A0A0LZS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G614640 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 6.9e-108
Identity = 198/247 (80.16%), Postives = 215/247 (87.04%), Query Frame = 1


Query: 1   MPTFFNPCLSSNFGGGSHALDSEEYIKKGNNLLKWKIPKVPTTKIYKRKSFTFFSDPSIK 60
           M TF   C SSNFGGGSH+LDSEEYIKKG NLLKWKIPK+PTTKIYK   F FFSDP IK
Sbjct: 1   MSTF---CWSSNFGGGSHSLDSEEYIKKGKNLLKWKIPKIPTTKIYKSNPFIFFSDPFIK 60

Query: 61  TKEETMSCENGSQGFRLISENPFMVGLNDKRFYSMLNVGMIQIGVKTLTTKIPSNASIIL 120
           TKEETM CENGSQ FRLIS NP +    +KRFY+ LN+GMIQIGVKTLTTKIPSNASIIL
Sbjct: 61  TKEETMPCENGSQVFRLISGNPMVDNFQEKRFYTRLNMGMIQIGVKTLTTKIPSNASIIL 120

Query: 121 CVFDTRNDNFENSILGLVESNLSDGPMFFNIFPNITMSLFHPKLSESLVLIAIVQGFEQL 180
           CVFDTRNDNFE+SILGLVES L DGP+FFNIFPNITM +FHPKL ES VLIA+VQGFEQL
Sbjct: 121 CVFDTRNDNFEDSILGLVESKLIDGPIFFNIFPNITMPIFHPKLLESFVLIAMVQGFEQL 180

Query: 181 PEGTKPISLMWRTCYKLQGSDLPDALLESPQGKTVFFQTDFEKSEVAVQKVSKWDEVVCK 240
           P+GT PISLMWRTCYKLQ S LP AL+ESPQGKTVFFQT+FE S+VA QKVS+WDEV+CK
Sbjct: 181 PQGTSPISLMWRTCYKLQASALPTALIESPQGKTVFFQTNFENSKVADQKVSQWDEVICK 240

Query: 241 VRSIIMK 248
           VR+ IMK
Sbjct: 241 VRNNIMK 244

[Close]

BLAST of Lsi06G005320.1 vs. TrEMBL
Match: A0A0A0LXM3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G614140 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.4e-52
Identity = 114/247 (46.15%), Postives = 163/247 (65.99%), Query Frame = 1


Query: 1   MPTFFNPCLSSNFGGGSHALDSEEYIKKGNNLLKWKIPKVPTTKIY--KRKSFTFF---- 60
           M  FF  C S NF G  H+L+ EEY++KG +L+KWK+P+VP  KIY  +RK+  F     
Sbjct: 1   MSLFFKSCSSKNFVG-DHSLEEEEYVEKGKSLVKWKMPRVPIHKIYEERRKNHFFIFPSK 60

Query: 61  SDPSIKTKEETMSCENGSQGFRLISENPFMVGLNDK-RFYSMLNVGMIQIGVKTLTTKIP 120
           +DPSI+T E  +S  N    F+L  + P       +  F++ +N+G++QIGVKTLT KIP
Sbjct: 61  NDPSIRTTEGQISFGNEGGSFKLYGQTPSSYCRRRRISFFNTMNIGLVQIGVKTLTKKIP 120

Query: 121 SNASIILCVFDTRNDNFENSILGLVESNLSDGPMFFNIFPNITMSLFHPKLSESLVLIAI 180
            NASIILC+ D R +  E+S+L LVES L DGP +FN+FPNI +SLF   ++  L +  +
Sbjct: 121 PNASIILCLRDNRIEKLEDSLLALVESKLGDGPFYFNVFPNINLSLFFSSITNVLSVHVL 180

Query: 181 VQGFEQLPEGTKPISLMWRTCYKLQGSDL-PDALLESPQGKTVFFQTDF--EKSEVAVQK 238
           V+G +++P+G+ PI +  RTCYKL  +D   +AL+ESP GKTVFFQ +   +  +  VQK
Sbjct: 181 VKGLDKIPKGSAPIVVTCRTCYKLNQNDFGSEALIESPVGKTVFFQIEIFEDDDDDVVQK 240

[Close]

BLAST of Lsi06G005320.1 vs. TrEMBL
Match: A5BNN5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021290 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.4e-30
Identity = 85/235 (36.17%), Postives = 137/235 (58.30%), Query Frame = 1


Query: 7    PCLSSNFGGGSHALDSEE--YIKKGNNLLKWKIPKVPTTKIYKRKSFTFFSDPSIKTKEE 66
            PC  S+    +  ++SEE  Y K  N+L  WK+PKV   +IYK+ +F FF+D +IKT E 
Sbjct: 3139 PCRRSSDSQDT-VVNSEEINYPKIQNDLDDWKLPKVSNQEIYKKGTFKFFTDYTIKTSEM 3198

Query: 67   TMSCENGSQGFRLISENPFMVGLNDKRFYSMLNVGMIQIGVKTLTTKIPSNASIILCVFD 126
            T+S E   Q  RL+      V  + K  Y+ ++ GMIQ+  K LT ++  N +I++C+ D
Sbjct: 3199 TVSLEQDDQVIRLLDNRS--VEKHKKDGYNFIHFGMIQVAAKPLT-RLGLNTAIVMCLRD 3258

Query: 127  TRNDNFENSILGLVESNLSDGPMFFNIFPNITMSLFHPKLSESLVLIAIVQGFEQLPEGT 186
             R+  + +SI+G V++ L+DGP++F  +PN T+ L    + +S+VL     GF+  P G 
Sbjct: 3259 NRHLEYRDSIIGAVQAGLNDGPVYFQCYPNFTVRLRDADILDSVVLHIKTHGFKIKP-GN 3318

Query: 187  KPISLMWRTCYKLQGSDL-PDALLESPQGKTVFFQTD-FEKSEVAVQKVSKWDEV 238
             P+S++ R  YK   + +   AL  SP+G+T +F +D  +KS+  + K   W +V
Sbjct: 3319 SPVSIITRFAYKSMNTSVGSGALCTSPKGETTYFHSDMLDKSDFIIPKKILWKDV 3368

[Close]

BLAST of Lsi06G005320.1 vs. TrEMBL
Match: A5B687_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036869 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.8e-30
Identity = 82/222 (36.94%), Postives = 132/222 (59.46%), Query Frame = 1


Query: 20  LDSEE--YIKKGNNLLKWKIPKVPTTKIYKRKSFTFFSDPSIKTKEETMSCENGSQGFRL 79
           ++SEE  Y K  N+L  WK+PKV   +IYK+ +F FF+D +IKT E T+S E   Q  RL
Sbjct: 13  VNSEEINYPKIQNDLDDWKLPKVSNQEIYKKGTFKFFTDYTIKTSEMTVSLEQDDQVIRL 72

Query: 80  ISENPFMVGLNDKRFYSMLNVGMIQIGVKTLTTKIPSNASIILCVFDTRNDNFENSILGL 139
           +      V  + K  Y+ ++ GMIQ+  K LT ++  N +I++C+ D R+  + +SI+G 
Sbjct: 73  LDNRS--VEKHKKDGYNFIHFGMIQVAAKPLT-RLGLNTAIVMCLRDNRHLEYRDSIIGA 132

Query: 140 VESNLSDGPMFFNIFPNITMSLFHPKLSESLVLIAIVQGFEQLPEGTKPISLMWRTCYKL 199
           V++ L+DGP++F  +PN T+ L    + +S+VL     GF+  P G  P+S++ R  YK 
Sbjct: 133 VQAGLNDGPVYFQCYPNFTVRLRDADILDSVVLHIKTHGFKIKP-GNSPVSIITRFAYKS 192

Query: 200 QGSDL-PDALLESPQGKTVFFQTD-FEKSEVAVQKVSKWDEV 238
             + +   AL  SP+G+T +F +D  +KS+  + K   W +V
Sbjct: 193 MNTSVGSGALCTSPKGETTYFHSDMLDKSDFIIPKKILWKDV 230

[Close]

BLAST of Lsi06G005320.1 vs. TrEMBL
Match: A5AWY3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043898 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.8e-30
Identity = 82/222 (36.94%), Postives = 132/222 (59.46%), Query Frame = 1


Query: 20  LDSEE--YIKKGNNLLKWKIPKVPTTKIYKRKSFTFFSDPSIKTKEETMSCENGSQGFRL 79
           ++SEE  Y K  N+L  WK+PKV   +IYK+ +F FF+D +IKT E T+S E   Q  RL
Sbjct: 13  VNSEEINYPKIQNDLDDWKLPKVSNQEIYKKGTFKFFTDYTIKTSEMTVSLEQDDQVIRL 72

Query: 80  ISENPFMVGLNDKRFYSMLNVGMIQIGVKTLTTKIPSNASIILCVFDTRNDNFENSILGL 139
           +      V  + K  Y+ ++ GMIQ+  K LT ++  N +I++C+ D R+  + +SI+G 
Sbjct: 73  LDNRS--VEKHKKDGYNFIHFGMIQVAAKPLT-RLGLNTAIVMCLRDNRHLEYRDSIIGA 132

Query: 140 VESNLSDGPMFFNIFPNITMSLFHPKLSESLVLIAIVQGFEQLPEGTKPISLMWRTCYKL 199
           V++ L+DGP++F  +PN T+ L    + +S+VL     GF+  P G  P+S++ R  YK 
Sbjct: 133 VQAGLNDGPVYFQCYPNFTVRLRDADILDSVVLHIKTHGFKIKP-GNSPVSIITRFAYKS 192

Query: 200 QGSDL-PDALLESPQGKTVFFQTD-FEKSEVAVQKVSKWDEV 238
             + +   AL  SP+G+T +F +D  +KS+  + K   W +V
Sbjct: 193 MNTSVGSGALCTSPKGETTYFHSDMLDKSDFIIPKKILWKDV 230

[Close]

BLAST of Lsi06G005320.1 vs. NCBI nr
Match: gi|700211398|gb|KGN66494.1| (hypothetical protein Csa_1G614640 [Cucumis sativus])

HSP 1 Score: 398.3 bits (1022), Expect = 9.9e-108
Identity = 198/247 (80.16%), Postives = 215/247 (87.04%), Query Frame = 1


Query: 1   MPTFFNPCLSSNFGGGSHALDSEEYIKKGNNLLKWKIPKVPTTKIYKRKSFTFFSDPSIK 60
           M TF   C SSNFGGGSH+LDSEEYIKKG NLLKWKIPK+PTTKIYK   F FFSDP IK
Sbjct: 1   MSTF---CWSSNFGGGSHSLDSEEYIKKGKNLLKWKIPKIPTTKIYKSNPFIFFSDPFIK 60

Query: 61  TKEETMSCENGSQGFRLISENPFMVGLNDKRFYSMLNVGMIQIGVKTLTTKIPSNASIIL 120
           TKEETM CENGSQ FRLIS NP +    +KRFY+ LN+GMIQIGVKTLTTKIPSNASIIL
Sbjct: 61  TKEETMPCENGSQVFRLISGNPMVDNFQEKRFYTRLNMGMIQIGVKTLTTKIPSNASIIL 120

Query: 121 CVFDTRNDNFENSILGLVESNLSDGPMFFNIFPNITMSLFHPKLSESLVLIAIVQGFEQL 180
           CVFDTRNDNFE+SILGLVES L DGP+FFNIFPNITM +FHPKL ES VLIA+VQGFEQL
Sbjct: 121 CVFDTRNDNFEDSILGLVESKLIDGPIFFNIFPNITMPIFHPKLLESFVLIAMVQGFEQL 180

Query: 181 PEGTKPISLMWRTCYKLQGSDLPDALLESPQGKTVFFQTDFEKSEVAVQKVSKWDEVVCK 240
           P+GT PISLMWRTCYKLQ S LP AL+ESPQGKTVFFQT+FE S+VA QKVS+WDEV+CK
Sbjct: 181 PQGTSPISLMWRTCYKLQASALPTALIESPQGKTVFFQTNFENSKVADQKVSQWDEVICK 240

Query: 241 VRSIIMK 248
           VR+ IMK
Sbjct: 241 VRNNIMK 244

[Close]

BLAST of Lsi06G005320.1 vs. NCBI nr
Match: gi|700211397|gb|KGN66493.1| (hypothetical protein Csa_1G614140 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 2.0e-52
Identity = 114/247 (46.15%), Postives = 163/247 (65.99%), Query Frame = 1


Query: 1   MPTFFNPCLSSNFGGGSHALDSEEYIKKGNNLLKWKIPKVPTTKIY--KRKSFTFF---- 60
           M  FF  C S NF G  H+L+ EEY++KG +L+KWK+P+VP  KIY  +RK+  F     
Sbjct: 1   MSLFFKSCSSKNFVG-DHSLEEEEYVEKGKSLVKWKMPRVPIHKIYEERRKNHFFIFPSK 60

Query: 61  SDPSIKTKEETMSCENGSQGFRLISENPFMVGLNDK-RFYSMLNVGMIQIGVKTLTTKIP 120
           +DPSI+T E  +S  N    F+L  + P       +  F++ +N+G++QIGVKTLT KIP
Sbjct: 61  NDPSIRTTEGQISFGNEGGSFKLYGQTPSSYCRRRRISFFNTMNIGLVQIGVKTLTKKIP 120

Query: 121 SNASIILCVFDTRNDNFENSILGLVESNLSDGPMFFNIFPNITMSLFHPKLSESLVLIAI 180
            NASIILC+ D R +  E+S+L LVES L DGP +FN+FPNI +SLF   ++  L +  +
Sbjct: 121 PNASIILCLRDNRIEKLEDSLLALVESKLGDGPFYFNVFPNINLSLFFSSITNVLSVHVL 180

Query: 181 VQGFEQLPEGTKPISLMWRTCYKLQGSDL-PDALLESPQGKTVFFQTDF--EKSEVAVQK 238
           V+G +++P+G+ PI +  RTCYKL  +D   +AL+ESP GKTVFFQ +   +  +  VQK
Sbjct: 181 VKGLDKIPKGSAPIVVTCRTCYKLNQNDFGSEALIESPVGKTVFFQIEIFEDDDDDVVQK 240

[Close]

BLAST of Lsi06G005320.1 vs. NCBI nr
Match: gi|147855748|emb|CAN83440.1| (hypothetical protein VITISV_021290 [Vitis vinifera])

HSP 1 Score: 139.8 bits (351), Expect = 6.4e-30
Identity = 85/235 (36.17%), Postives = 137/235 (58.30%), Query Frame = 1


Query: 7    PCLSSNFGGGSHALDSEE--YIKKGNNLLKWKIPKVPTTKIYKRKSFTFFSDPSIKTKEE 66
            PC  S+    +  ++SEE  Y K  N+L  WK+PKV   +IYK+ +F FF+D +IKT E 
Sbjct: 3139 PCRRSSDSQDT-VVNSEEINYPKIQNDLDDWKLPKVSNQEIYKKGTFKFFTDYTIKTSEM 3198

Query: 67   TMSCENGSQGFRLISENPFMVGLNDKRFYSMLNVGMIQIGVKTLTTKIPSNASIILCVFD 126
            T+S E   Q  RL+      V  + K  Y+ ++ GMIQ+  K LT ++  N +I++C+ D
Sbjct: 3199 TVSLEQDDQVIRLLDNRS--VEKHKKDGYNFIHFGMIQVAAKPLT-RLGLNTAIVMCLRD 3258

Query: 127  TRNDNFENSILGLVESNLSDGPMFFNIFPNITMSLFHPKLSESLVLIAIVQGFEQLPEGT 186
             R+  + +SI+G V++ L+DGP++F  +PN T+ L    + +S+VL     GF+  P G 
Sbjct: 3259 NRHLEYRDSIIGAVQAGLNDGPVYFQCYPNFTVRLRDADILDSVVLHIKTHGFKIKP-GN 3318

Query: 187  KPISLMWRTCYKLQGSDL-PDALLESPQGKTVFFQTD-FEKSEVAVQKVSKWDEV 238
             P+S++ R  YK   + +   AL  SP+G+T +F +D  +KS+  + K   W +V
Sbjct: 3319 SPVSIITRFAYKSMNTSVGSGALCTSPKGETTYFHSDMLDKSDFIIPKKILWKDV 3368

[Close]

BLAST of Lsi06G005320.1 vs. NCBI nr
Match: gi|147777989|emb|CAN67572.1| (hypothetical protein VITISV_036870 [Vitis vinifera])

HSP 1 Score: 139.4 bits (350), Expect = 8.3e-30
Identity = 82/222 (36.94%), Postives = 132/222 (59.46%), Query Frame = 1


Query: 20  LDSEE--YIKKGNNLLKWKIPKVPTTKIYKRKSFTFFSDPSIKTKEETMSCENGSQGFRL 79
           ++SEE  Y K  N+L  WK+PKV   +IYK+ +F FF+D +IKT E T+S E   Q  RL
Sbjct: 13  VNSEEINYPKIQNDLDDWKLPKVSNQEIYKKGTFKFFTDYTIKTSEMTVSLEQDDQVIRL 72

Query: 80  ISENPFMVGLNDKRFYSMLNVGMIQIGVKTLTTKIPSNASIILCVFDTRNDNFENSILGL 139
           +      V  + K  Y+ ++ GMIQ+  K LT ++  N +I++C+ D R+  + +SI+G 
Sbjct: 73  LDNRS--VEKHKKDGYNFIHFGMIQVAAKPLT-RLGLNTAIVMCLRDNRHLEYRDSIIGA 132

Query: 140 VESNLSDGPMFFNIFPNITMSLFHPKLSESLVLIAIVQGFEQLPEGTKPISLMWRTCYKL 199
           V++ L+DGP++F  +PN T+ L    + +S+VL     GF+  P G  P+S++ R  YK 
Sbjct: 133 VQAGLNDGPVYFQCYPNFTVRLRDADILDSVVLHIKTHGFKIKP-GNSPVSIITRFAYKS 192

Query: 200 QGSDL-PDALLESPQGKTVFFQTD-FEKSEVAVQKVSKWDEV 238
             + +   AL  SP+G+T +F +D  +KS+  + K   W +V
Sbjct: 193 MNTSVGSGALCTSPKGETTYFHSDMLDKSDFIIPKKILWKDV 230

[Close]

BLAST of Lsi06G005320.1 vs. NCBI nr
Match: gi|147794978|emb|CAN76138.1| (hypothetical protein VITISV_043898 [Vitis vinifera])

HSP 1 Score: 139.4 bits (350), Expect = 8.3e-30
Identity = 82/222 (36.94%), Postives = 132/222 (59.46%), Query Frame = 1


Query: 20  LDSEE--YIKKGNNLLKWKIPKVPTTKIYKRKSFTFFSDPSIKTKEETMSCENGSQGFRL 79
           ++SEE  Y K  N+L  WK+PKV   +IYK+ +F FF+D +IKT E T+S E   Q  RL
Sbjct: 13  VNSEEINYPKIQNDLDDWKLPKVSNQEIYKKGTFKFFTDYTIKTSEMTVSLEQDDQVIRL 72

Query: 80  ISENPFMVGLNDKRFYSMLNVGMIQIGVKTLTTKIPSNASIILCVFDTRNDNFENSILGL 139
           +      V  + K  Y+ ++ GMIQ+  K LT ++  N +I++C+ D R+  + +SI+G 
Sbjct: 73  LDNRS--VEKHKKDGYNFIHFGMIQVAAKPLT-RLGLNTAIVMCLRDNRHLEYRDSIIGA 132

Query: 140 VESNLSDGPMFFNIFPNITMSLFHPKLSESLVLIAIVQGFEQLPEGTKPISLMWRTCYKL 199
           V++ L+DGP++F  +PN T+ L    + +S+VL     GF+  P G  P+S++ R  YK 
Sbjct: 133 VQAGLNDGPVYFQCYPNFTVRLRDADILDSVVLHIKTHGFKIKP-GNSPVSIITRFAYKS 192

Query: 200 QGSDL-PDALLESPQGKTVFFQTD-FEKSEVAVQKVSKWDEV 238
             + +   AL  SP+G+T +F +D  +KS+  + K   W +V
Sbjct: 193 MNTSVGSGALCTSPKGETTYFHSDMLDKSDFIIPKKILWKDV 230

The following BLAST results are available for this feature:

BLAST of Lsi06G005320.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G005320.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZS0_CUCSA	6.9e-108	80.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G614640 PE=4 SV=1	[more]
A0A0A0LXM3_CUCSA	1.4e-52	46.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G614140 PE=4 SV=1	[more]
A5BNN5_VITVI	4.4e-30	36.17	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021290 PE=4 SV=1	[more]
A5B687_VITVI	5.8e-30	36.94	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036869 PE=4 SV=1	[more]
A5AWY3_VITVI	5.8e-30	36.94	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043898 PE=4 SV=1	[more]

BLAST of Lsi06G005320.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi06G005320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211398\|gb\|KGN66494.1\|	9.9e-108	80.16	hypothetical protein Csa_1G614640 [Cucumis sativus]	[more]
gi\|700211397\|gb\|KGN66493.1\|	2.0e-52	46.15	hypothetical protein Csa_1G614140 [Cucumis sativus]	[more]
gi\|147855748\|emb\|CAN83440.1\|	6.4e-30	36.17	hypothetical protein VITISV_021290 [Vitis vinifera]	[more]
gi\|147777989\|emb\|CAN67572.1\|	8.3e-30	36.94	hypothetical protein VITISV_036870 [Vitis vinifera]	[more]
gi\|147794978\|emb\|CAN76138.1\|	8.3e-30	36.94	hypothetical protein VITISV_043898 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G005320	Lsi06G005320	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G005320.1.CDS.1	Lsi06G005320.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G005320.1	Lsi06G005320.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33054	FAMILY NOT NAMED	coord: 30..237 score: 6.8
None	No IPR available	PANTHER	PTHR33054:SF7	SUBFAMILY NOT NAMED	coord: 30..237 score: 6.8