Lsi06G004840.1 (mRNA) Bottle gourd (USVL1VR-Ls)

NameLsi06G004840.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionProtein THEMIS2
Locationchr06 : 5589710 .. 5590126 (+)
Sequence length417
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGAGGTCGAGGAAAGGGGAGGAAGTTGACCGTCACGAATCATGACGATGGTGGAAGTGGTGAGGAAGAGAAGATTCCTGCACAAAAGCGAAGGGGAAGGCCACAGAAGCCGTTGAAGGATGAGATTGATGAGGAAGAAGCTGAAAAGATCGAAGACGAGGACAGCGAGAATCTGAAAGGCAGTGACATTGTGAGCAAGGAGATGAAAAGCCCACCTGCAGCAGAGAATGGGAAAAGGAGGAGAAGAAACTCACAAGTGAAAGAAAAGCTCGATCCAGTCAAAGACGAAAATGGGGACGGAACACGATCAAGCACTGATGAATCAACCAGATCAAATGGATTTCGTCACAATGGAAGCAGGCGAAAAAGCAAGCCCCGTCGAGCTGCTGAAGCGGGAGTTAACTGCAAGTGA

mRNA sequence

ATGGGTAGAGGTCGAGGAAAGGGGAGGAAGTTGACCGTCACGAATCATGACGATGGTGGAAGTGGTGAGGAAGAGAAGATTCCTGCACAAAAGCGAAGGGGAAGGCCACAGAAGCCGTTGAAGGATGAGATTGATGAGGAAGAAGCTGAAAAGATCGAAGACGAGGACAGCGAGAATCTGAAAGGCAGTGACATTGTGAGCAAGGAGATGAAAAGCCCACCTGCAGCAGAGAATGGGAAAAGGAGGAGAAGAAACTCACAAGTGAAAGAAAAGCTCGATCCAGTCAAAGACGAAAATGGGGACGGAACACGATCAAGCACTGATGAATCAACCAGATCAAATGGATTTCGTCACAATGGAAGCAGGCGAAAAAGCAAGCCCCGTCGAGCTGCTGAAGCGGGAGTTAACTGCAAGTGA

Coding sequence (CDS)

ATGGGTAGAGGTCGAGGAAAGGGGAGGAAGTTGACCGTCACGAATCATGACGATGGTGGAAGTGGTGAGGAAGAGAAGATTCCTGCACAAAAGCGAAGGGGAAGGCCACAGAAGCCGTTGAAGGATGAGATTGATGAGGAAGAAGCTGAAAAGATCGAAGACGAGGACAGCGAGAATCTGAAAGGCAGTGACATTGTGAGCAAGGAGATGAAAAGCCCACCTGCAGCAGAGAATGGGAAAAGGAGGAGAAGAAACTCACAAGTGAAAGAAAAGCTCGATCCAGTCAAAGACGAAAATGGGGACGGAACACGATCAAGCACTGATGAATCAACCAGATCAAATGGATTTCGTCACAATGGAAGCAGGCGAAAAAGCAAGCCCCGTCGAGCTGCTGAAGCGGGAGTTAACTGCAAGTGA

Protein sequence

MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENLKGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNGSRRKSKPRRAAEAGVNCK
BLAST of Lsi06G004840.1 vs. TrEMBL
Match: A0A0A0LXE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G605770 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 9.9e-64
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 1

Query: 1   MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60
           MGRGRGKGRKLTVTNHDD GSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL
Sbjct: 1   MGRGRGKGRKLTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60

Query: 61  KGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120
           KGSDIVSKEMK+PPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG
Sbjct: 61  KGSDIVSKEMKNPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120

Query: 121 SRRKSKPRRAAEAGVNCK 139
           SRRKSKPRRAAEAGV+CK
Sbjct: 121 SRRKSKPRRAAEAGVSCK 138

BLAST of Lsi06G004840.1 vs. TrEMBL
Match: W9QYA2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018387 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 6.3e-50
Identity = 113/138 (81.88%), Postives = 124/138 (89.86%), Query Frame = 1

Query: 1   MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60
           MGRGRGKG++LTVTNHDD GSGEEEKIPAQKRRGRPQKPLKDEID+EE EKIE++DSEN 
Sbjct: 1   MGRGRGKGKRLTVTNHDDPGSGEEEKIPAQKRRGRPQKPLKDEIDDEEVEKIEEDDSENA 60

Query: 61  KGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120
           K   I +KE KSP AAENGK+R+R SQ KEK D VK+ENG+GTRSSTDEST+SNGFRHNG
Sbjct: 61  KAG-IPTKEAKSPSAAENGKKRKRYSQAKEKSDSVKEENGNGTRSSTDESTKSNGFRHNG 120

Query: 121 SRRKSKPRRAAEAGVNCK 139
           SRRKSKPRRAAEAGV CK
Sbjct: 121 SRRKSKPRRAAEAGVECK 137

BLAST of Lsi06G004840.1 vs. TrEMBL
Match: U5GK56_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s22010g PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.4e-49
Identity = 114/138 (82.61%), Postives = 123/138 (89.13%), Query Frame = 1

Query: 1   MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60
           MGRGRGKG+KLTV+NHDD GSGEEEKIPAQKRRGRPQKPLKD IDEEE EKIEDED E  
Sbjct: 1   MGRGRGKGKKLTVSNHDDTGSGEEEKIPAQKRRGRPQKPLKDGIDEEEVEKIEDEDVEKG 60

Query: 61  KGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120
           K +DI SK+ KSPPAAENGK+R+R SQ KEK D VK+ENG GTRSSTD+ST+SNGFRHNG
Sbjct: 61  K-TDITSKDSKSPPAAENGKKRKRYSQAKEKPDSVKEENGVGTRSSTDDSTKSNGFRHNG 120

Query: 121 SRRKSKPRRAAEAGVNCK 139
           SRRKSKPRRAAEAGV CK
Sbjct: 121 SRRKSKPRRAAEAGVECK 137

BLAST of Lsi06G004840.1 vs. TrEMBL
Match: M5WDG9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013160mg PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.0e-49
Identity = 112/138 (81.16%), Postives = 123/138 (89.13%), Query Frame = 1

Query: 1   MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60
           MGRGRGKG++LTVTNHDD GSGEEEKIPAQKRRGRPQKPLKDEIDEEE +KIE +DSEN 
Sbjct: 1   MGRGRGKGKRLTVTNHDDPGSGEEEKIPAQKRRGRPQKPLKDEIDEEETDKIEADDSENG 60

Query: 61  KGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120
           K   I SKE+KSP  AENGK+R+R SQVKEK D VK+ENG GTRSSTD+ST+SNGFRHNG
Sbjct: 61  KAG-IASKEIKSPSVAENGKKRKRYSQVKEKSDSVKEENGIGTRSSTDDSTKSNGFRHNG 120

Query: 121 SRRKSKPRRAAEAGVNCK 139
           SRRK+KPRRAAEAGV CK
Sbjct: 121 SRRKNKPRRAAEAGVECK 137

BLAST of Lsi06G004840.1 vs. TrEMBL
Match: F6GUD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g01420 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-47
Identity = 113/138 (81.88%), Postives = 122/138 (88.41%), Query Frame = 1

Query: 1   MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60
           MGRGRGKG+KLTVTNH+D GSGEEEKIPAQKRRGRPQKPLKDEIDEEE EKIEDEDSEN 
Sbjct: 1   MGRGRGKGKKLTVTNHEDPGSGEEEKIPAQKRRGRPQKPLKDEIDEEEVEKIEDEDSENA 60

Query: 61  KGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120
           K   I SKEMKS  AAENGK+R+R SQ KEK D VK+ENG GTRSSTD+ST+SNGFR+N 
Sbjct: 61  K-IGISSKEMKSSAAAENGKKRKRYSQAKEKPDSVKEENGIGTRSSTDDSTKSNGFRNNR 120

Query: 121 SRRKSKPRRAAEAGVNCK 139
           +RRKSKPRRAAEAGV CK
Sbjct: 121 NRRKSKPRRAAEAGVECK 137

BLAST of Lsi06G004840.1 vs. TAIR10
Match: AT2G42190.1 (AT2G42190.1 unknown protein)

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-24
Identity = 75/148 (50.68%), Postives = 95/148 (64.19%), Query Frame = 1

Query: 1   MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAE---------K 60
           M RGRGKG+K   +  +D GSG+EEKIPA +RRGRPQKP+KD+ +EEE E         +
Sbjct: 1   MRRGRGKGKKQNASAREDRGSGDEEKIPAYRRRGRPQKPMKDDFEEEEEEDDEEMVEKME 60

Query: 61  IEDEDSENLKGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDEST 120
           +EDED E   GS + SK++         K R+R        D  ++ENG G++ +TD+ST
Sbjct: 61  VEDEDEEIDDGS-VTSKDL---------KERKRKMSNGSNTDLTEEENGLGSKPNTDDST 120

Query: 121 RSN--GFRHNGSRRKSKPRRAAEAGVNC 138
           RS   GFR NGSRRKSKPRRAAEA V C
Sbjct: 121 RSTSIGFRQNGSRRKSKPRRAAEAVVEC 138

BLAST of Lsi06G004840.1 vs. TAIR10
Match: AT3G57930.1 (AT3G57930.1 unknown protein)

HSP 1 Score: 107.1 bits (266), Expect = 9.0e-24
Identity = 71/140 (50.71%), Postives = 95/140 (67.86%), Query Frame = 1

Query: 1   MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60
           M RGRGKG++   T  +D GSGEEEKIPA ++RGRPQKP+KDE +EEE E ++  D E  
Sbjct: 1   MRRGRGKGKRQNATAREDRGSGEEEKIPAFRKRGRPQKPVKDE-EEEEEELVKKTDEEED 60

Query: 61  KGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSN---GFR 120
           K  D            ENG++R++  + KE  +  ++ENG G++SST++S +S+   GFR
Sbjct: 61  KDDDTNGSVTSKENVTENGRKRKKPVESKES-NITEEENGVGSKSSTEDSMKSSSSIGFR 120

Query: 121 HNGSRRKSKPRRAAEAGVNC 138
            NGSRRK+KPRRAAEA V C
Sbjct: 121 QNGSRRKNKPRRAAEAVVEC 138

BLAST of Lsi06G004840.1 vs. NCBI nr
Match: gi|449462601|ref|XP_004149029.1| (PREDICTED: uncharacterized protein LOC101218566 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 1

Query: 1   MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60
           MGRGRGKGRKLTVTNHDD GSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL
Sbjct: 1   MGRGRGKGRKLTVTNHDDAGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60

Query: 61  KGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120
           KGSDIVSKEMK+PPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG
Sbjct: 61  KGSDIVSKEMKNPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120

Query: 121 SRRKSKPRRAAEAGVNCK 139
           SRRKSKPRRAAEAGV+CK
Sbjct: 121 SRRKSKPRRAAEAGVSCK 138

BLAST of Lsi06G004840.1 vs. NCBI nr
Match: gi|703065085|ref|XP_010087361.1| (hypothetical protein L484_018387 [Morus notabilis])

HSP 1 Score: 204.9 bits (520), Expect = 9.0e-50
Identity = 113/138 (81.88%), Postives = 124/138 (89.86%), Query Frame = 1

Query: 1   MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60
           MGRGRGKG++LTVTNHDD GSGEEEKIPAQKRRGRPQKPLKDEID+EE EKIE++DSEN 
Sbjct: 1   MGRGRGKGKRLTVTNHDDPGSGEEEKIPAQKRRGRPQKPLKDEIDDEEVEKIEEDDSENA 60

Query: 61  KGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120
           K   I +KE KSP AAENGK+R+R SQ KEK D VK+ENG+GTRSSTDEST+SNGFRHNG
Sbjct: 61  KAG-IPTKEAKSPSAAENGKKRKRYSQAKEKSDSVKEENGNGTRSSTDESTKSNGFRHNG 120

Query: 121 SRRKSKPRRAAEAGVNCK 139
           SRRKSKPRRAAEAGV CK
Sbjct: 121 SRRKSKPRRAAEAGVECK 137

BLAST of Lsi06G004840.1 vs. NCBI nr
Match: gi|1009118575|ref|XP_015875934.1| (PREDICTED: uncharacterized protein LOC107412633 [Ziziphus jujuba])

HSP 1 Score: 204.9 bits (520), Expect = 9.0e-50
Identity = 113/138 (81.88%), Postives = 124/138 (89.86%), Query Frame = 1

Query: 1   MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60
           MGRGRGKG++LTVTNHDD GSGEEEKIP QKRRGRPQKPLKDE+DEEE EKIE++DSEN 
Sbjct: 1   MGRGRGKGKRLTVTNHDDPGSGEEEKIPTQKRRGRPQKPLKDEMDEEENEKIEEDDSENA 60

Query: 61  KGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120
           K   I +KEMKSPPAAENGK+R+R SQVKEK D V +ENG GTRSSTD+ST+SNGFRHNG
Sbjct: 61  KAG-ISTKEMKSPPAAENGKKRKRYSQVKEKSDSVNEENGVGTRSSTDDSTKSNGFRHNG 120

Query: 121 SRRKSKPRRAAEAGVNCK 139
           SRRKSKPRRAAEAGV CK
Sbjct: 121 SRRKSKPRRAAEAGVECK 137

BLAST of Lsi06G004840.1 vs. NCBI nr
Match: gi|694376649|ref|XP_009364718.1| (PREDICTED: uncharacterized protein LOC103954606 [Pyrus x bretschneideri])

HSP 1 Score: 203.8 bits (517), Expect = 2.0e-49
Identity = 113/138 (81.88%), Postives = 125/138 (90.58%), Query Frame = 1

Query: 1   MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60
           MGRGRGKG++LTV NHDD GSGEEEKIPAQKRRGRPQKPLKDEIDEEEAE+IE +DSEN 
Sbjct: 1   MGRGRGKGKRLTVNNHDDPGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAERIEADDSENG 60

Query: 61  KGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120
           K   I SKE+KSP AAENGK+R+R SQVKEK D VK+ENG+GTRSSTD+ST+SNGFRHNG
Sbjct: 61  KAG-ISSKEVKSPSAAENGKKRKRQSQVKEKSDSVKEENGNGTRSSTDDSTKSNGFRHNG 120

Query: 121 SRRKSKPRRAAEAGVNCK 139
           SRRK+KPRRAAEAGV CK
Sbjct: 121 SRRKNKPRRAAEAGVECK 137

BLAST of Lsi06G004840.1 vs. NCBI nr
Match: gi|566164031|ref|XP_006386091.1| (hypothetical protein POPTR_0003s22010g [Populus trichocarpa])

HSP 1 Score: 203.0 bits (515), Expect = 3.4e-49
Identity = 114/138 (82.61%), Postives = 123/138 (89.13%), Query Frame = 1

Query: 1   MGRGRGKGRKLTVTNHDDGGSGEEEKIPAQKRRGRPQKPLKDEIDEEEAEKIEDEDSENL 60
           MGRGRGKG+KLTV+NHDD GSGEEEKIPAQKRRGRPQKPLKD IDEEE EKIEDED E  
Sbjct: 1   MGRGRGKGKKLTVSNHDDTGSGEEEKIPAQKRRGRPQKPLKDGIDEEEVEKIEDEDVEKG 60

Query: 61  KGSDIVSKEMKSPPAAENGKRRRRNSQVKEKLDPVKDENGDGTRSSTDESTRSNGFRHNG 120
           K +DI SK+ KSPPAAENGK+R+R SQ KEK D VK+ENG GTRSSTD+ST+SNGFRHNG
Sbjct: 61  K-TDITSKDSKSPPAAENGKKRKRYSQAKEKPDSVKEENGVGTRSSTDDSTKSNGFRHNG 120

Query: 121 SRRKSKPRRAAEAGVNCK 139
           SRRKSKPRRAAEAGV CK
Sbjct: 121 SRRKSKPRRAAEAGVECK 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LXE8_CUCSA9.9e-6497.83Uncharacterized protein OS=Cucumis sativus GN=Csa_1G605770 PE=4 SV=1[more]
W9QYA2_9ROSA6.3e-5081.88Uncharacterized protein OS=Morus notabilis GN=L484_018387 PE=4 SV=1[more]
U5GK56_POPTR2.4e-4982.61Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s22010g PE=4 SV=1[more]
M5WDG9_PRUPE9.0e-4981.16Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013160mg PE=4 SV=1[more]
F6GUD3_VITVI1.3e-4781.88Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g01420 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
AT2G42190.12.4e-2450.68 unknown protein[more]
AT3G57930.19.0e-2450.71 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449462601|ref|XP_004149029.1|1.4e-6397.83PREDICTED: uncharacterized protein LOC101218566 [Cucumis sativus][more]
gi|703065085|ref|XP_010087361.1|9.0e-5081.88hypothetical protein L484_018387 [Morus notabilis][more]
gi|1009118575|ref|XP_015875934.1|9.0e-5081.88PREDICTED: uncharacterized protein LOC107412633 [Ziziphus jujuba][more]
gi|694376649|ref|XP_009364718.1|2.0e-4981.88PREDICTED: uncharacterized protein LOC103954606 [Pyrus x bretschneideri][more]
gi|566164031|ref|XP_006386091.1|3.4e-4982.61hypothetical protein POPTR_0003s22010g [Populus trichocarpa][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi06G004840Lsi06G004840gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G004840.1.CDS.1Lsi06G004840.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi06G004840.1Lsi06G004840.1-proteinpolypeptide


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34055FAMILY NOT NAMEDcoord: 1..138
score: 2.5