Lsi06G000470.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G000470.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 370322 .. 371436 (-)
Sequence length591
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTGAATCTTTAATGGAATCCGTATACTCAAAATAAATAAAAAATTTCATTAAATAAATATGTGTATCTAGGGGTAATTCACTTTGAAGCAACTATTCCCTAGATACACACGTCGTGATATTTTAGTGATATTTTATTTATTTCACAATTGAATCAATTTAAAAAAGACCTAAAGTTAGGGATTTATCAATCGGTAATGTTGCTCCAATACCCAACCAAAGGGCTACTGCGGTACCAATCAAAAAGACGGTTGTCGCTACTGGACGACGAAATGGATTTTGGAATTTATTGACATTCTCCAAAAACGGTACAGTTAATAATCCCGCCGGTACGGAAACCATTAAAAGAACACCCAATAACTTATTTGGCACTGTACGAAGTATTTGAAATACGGGAAAGAAATACCATTCCGGCAATATTTCCAAAGGAGTTGCAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGAACCGCTAAGCCCACGTTACATGCAATAGTACCTAGAATTACTACTGGAAAAATATATAAAAGATCATTGGGCCATGCGGGTTCTCCGTAATAATTATGACCCATACCCTTAGCCAATTTAGCTCTTAATACAGGATCATTCAAATCTGGTTTTTTTGTTATTAGGATAGGTGAATTATTATGGATCCATCCCCCGAAGGAACCGGACATGATAATTTTTCATCATCCGGCTCGAGCACAAATCAAACGAACCAACTGGATCCAGATAAAAAATCGATATCTTATCCATATCCAAGCATATATAAAATAAATGATTGATTCAATGTAAGAAAAAATTTAGAAGATTCTGTTTTCAAGAGTTACAATTATCCATTGCAAGGAATTCAGTTCTTACAGATAAATGCTCAATACCCAAGTAGGCTTACAAAGTTGATAATGTTCAAGTGCTTTCTGGGTCGTCTCAGACCTTGCGATGGGGCTTTAGCCCCCAAAAATATGGATACTTTTTACATCCAAAGGATTTACTTGTTACTAATAGAGTCTAGCCTATGTTCTTCTTTAGATCCCTTGTTTCACTCCGATAGTATCATAAATCGAGTCAATGCAGAGGAAATGAATGCATTTTCATACTATTAA

mRNA sequence

ATGAAACCTAAAGTTAGGGATTTATCAATCGGTAATGTTGCTCCAATACCCAACCAAAGGGCTACTGCGGTACCAATCAAAAAGACGGTTGTCGCTACTGGACGACGAAATGGATTTTGGAATTTATTGACATTCTCCAAAAACGGTACAGTTAATAATCCCGCCGGTACGGAAACCATTAAAAGAACACCCAATAACTTATTTGGCACTAAATACCATTCCGGCAATATTTCCAAAGGAGTTGCAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGAACCGCTAAGCCCACGTTACATGCAATAAGTTACAATTATCCATTGCAAGGAATTCAGTTCTTACAGATAAATGCTCAATACCCAAGTAGGCTTACAAAGTTGATAATGTTCAAGTGCTTTCTGGGTCGTCTCAGACCTTGCGATGGGGCTTTAGCCCCCAAAAATATGGATACTTTTTACATCCAAAGGATTTACTTGTTACTAATAGAGTCTAGCCTATGTTCTTCTTTAGATCCCTTGTTTCACTCCGATAGTATCATAAATCGAGTCAATGCAGAGGAAATGAATGCATTTTCATACTATTAA

Coding sequence (CDS)

ATGAAACCTAAAGTTAGGGATTTATCAATCGGTAATGTTGCTCCAATACCCAACCAAAGGGCTACTGCGGTACCAATCAAAAAGACGGTTGTCGCTACTGGACGACGAAATGGATTTTGGAATTTATTGACATTCTCCAAAAACGGTACAGTTAATAATCCCGCCGGTACGGAAACCATTAAAAGAACACCCAATAACTTATTTGGCACTAAATACCATTCCGGCAATATTTCCAAAGGAGTTGCAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGAACCGCTAAGCCCACGTTACATGCAATAAGTTACAATTATCCATTGCAAGGAATTCAGTTCTTACAGATAAATGCTCAATACCCAAGTAGGCTTACAAAGTTGATAATGTTCAAGTGCTTTCTGGGTCGTCTCAGACCTTGCGATGGGGCTTTAGCCCCCAAAAATATGGATACTTTTTACATCCAAAGGATTTACTTGTTACTAATAGAGTCTAGCCTATGTTCTTCTTTAGATCCCTTGTTTCACTCCGATAGTATCATAAATCGAGTCAATGCAGAGGAAATGAATGCATTTTCATACTATTAA

Protein sequence

MKPKVRDLSIGNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLFGTKYHSGNISKGVANGSAGSPIIDGSRTAKPTLHAISYNYPLQGIQFLQINAQYPSRLTKLIMFKCFLGRLRPCDGALAPKNMDTFYIQRIYLLLIESSLCSSLDPLFHSDSIINRVNAEEMNAFSYY
Homology
[Close]
BLAST of Lsi06G000470.1 vs. TrEMBL
Match: K2R3U1_MACPH (Uncharacterized protein (Fragment) OS=Macrophomina phaseolina (strain MS6) GN=MPH_14171 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.0e-10
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 1 

Query: 27 KKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTP 65
          K  VVATGRRNGFWNLLTFSK GTVNNP GTETIKRTP
Sbjct: 18 KLFVVATGRRNGFWNLLTFSKKGTVNNPIGTETIKRTP 55

[Close]
BLAST of Lsi06G000470.1 vs. NCBI nr
Match: gi|407914963|gb|EKG08893.1| (hypothetical protein MPH_14171, partial [Macrophomina phaseolina MS6])

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 1 

Query: 27 KKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTP 65
          K  VVATGRRNGFWNLLTFSK GTVNNP GTETIKRTP
Sbjct: 18 KLFVVATGRRNGFWNLLTFSKKGTVNNPIGTETIKRTP 55

The following BLAST results are available for this feature:
BLAST of Lsi06G000470.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G000470.1 vs. TrEMBL
Match NameE-valueIdentityDescription
K2R3U1_MACPH9.0e-1089.47Uncharacterized protein (Fragment) OS=Macrophomina phaseolina (strain MS6) GN=MP... [more]
BLAST of Lsi06G000470.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G000470.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|407914963|gb|EKG08893.1|1.3e-0989.47hypothetical protein MPH_14171, partial [Macrophomina phaseolina MS6][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi06G000470Lsi06G000470gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G000470.1.CDS.4Lsi06G000470.1.CDS.4CDS
Lsi06G000470.1.CDS.3Lsi06G000470.1.CDS.3CDS
Lsi06G000470.1.CDS.2Lsi06G000470.1.CDS.2CDS
Lsi06G000470.1.CDS.1Lsi06G000470.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi06G000470.1Lsi06G000470.1-proteinpolypeptide