Lsi05G021170.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G021170.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	cyclic nucleotide gated channel 10
Location	chr05 : 28049235 .. 28050659 (+)
Sequence length	1069

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACAACGTAGGATCCCCAAGAAGTTGAGGCGGTGTATTAGACAATATGATCAGTACAAATGGCAGATAAATAGGGGAGTTAAGGAAGAGGAACTGATCAATGAACTTCCAATAGACCTTGGAAGAGACATCAAACGCCTTCTTCACTTTGATGCTTGCTTGGCTAATCTTAAGAAAGTAAGTTCTTTTCCTTCTACTTTGGCATATTTGTCATCTAAAGTCTAAACCTTTTTTTTATTCTTAACCCTGGATGCTTTAGGTGCCACTTTTTAGTAGCATTGGTGACCGACTATTAGACGTAATGCACGGATATCTCAAGCCAGTGTTATTCACAGAGGATAGCATCGTTTTGCAAGAGGGTGAACCAGTTGTTAGGATGGTATTTATCATGAAAGGAAGGCTGGATGCTACTGGCTTTATGGATATCACAACAACTAACACGGTCGTTCTTAAGGCTGGTGACTTTTATGGTGAAGAGATAATTCCATGGGCAATGGCAGACCGCCTCATTTCTCTTCCAATTTCAACCAGAAGAATTAAATCTCAAACCAAGGTTGAAGCCTTTGCTCTAGAGGCTAATCAGTTGCGATCTGTAGTTAGTCAGCTCTACATTGAGTGCCTCTCTACCAAGCAAAAGCAATCAATGAGGCATGCTCTTTTTACTGAACAAATATATAAATTTCACTACAGTTGTCCCTCCATAGAGTTCTTTTAATTGATTTGTAATCCTTGTTCTCTAGGTTTTACTCTCAACCATGGAGAGTCTGGGCGGCCTTTAAAATATAAGAAGCTTGGCTTGACTACTGTCAAAGAAAGCAGAAGACAGGTGGTAGGTTTCGAGATGCATTGGCTAAAATCGTTGGCACCTCGAAAAACTCTAGTGTCAATCTATATGTGTCCGTATTCATATCCCATCTACTGCAAGCTGTGCAGCAAGATCGACACCACGAAACAACCCGACACTCACAGATGATGACGTTATTGCCACCTCCGAAGCCAGACGAGCGAGACAAGCGAGACCACGCCATCTTGAATGTTTAAAATGAGATGCTTCAAGCTCTGTTATGTTGAGTCTCTAGTGTAAGGTTTCTCTCTGTGATATGTTATTGATTAAATGTTCAGAAGGCTCTTCTTGCTTGGTTCCAACTTTCATTTTCTCTATAGCCTACTCCATAGCTTCTTCTTGGTAATTGTCTTGCTTTAATCTTGGCAGCATGCCTCAAAGTAGTAGCATAATGAAGCACCACCAAGTCACCAACTCAAATTCTAATCTGACTTTCCAGTTGAAGGGAGTTTTTCAAATTTTTGTTAGATATTCTTATATGATTCATTTGATTGATTCTAACAAAAGTCTCCAACAATACATACATTTTGAAGATGGCTTTCTTTGTCCAAATTCACAAACCAAATAAACAAAATGGG

mRNA sequence

ATGACACAACGTAGGATCCCCAAGAAGTTGAGGCGGTGTATTAGACAATATGATCAGTACAAATGGCAGATAAATAGGGGAGTTAAGGAAGAGGAACTGATCAATGAACTTCCAATAGACCTTGGAAGAGACATCAAACGCCTTCTTCACTTTGATGCTTGCTTGGCTAATCTTAAGAAAGTGCCACTTTTTAGTAGCATTGGTGACCGACTATTAGACGTAATGCACGGATATCTCAAGCCAGTGTTATTCACAGAGGATAGCATCGTTTTGCAAGAGGGTGAACCAGTTGTTAGGATGGTATTTATCATGAAAGGAAGGCTGGATGCTACTGGCTTTATGGATATCACAACAACTAACACGGTCGTTCTTAAGGCTGGTGACTTTTATGGTGAAGAGATAATTCCATGGGCAATGGCAGACCGCCTCATTTCTCTTCCAATTTCAACCAGAAGAATTAAATCTCAAACCAAGGTTGAAGCCTTTGCTCTAGAGGCTAATCAGTTGCGATCTGTAGTTAGTTTTACTCTCAACCATGGAGAGTCTGGGCGGCCTTTAAAATATAAGAAGCTTGGCTTGACTACTGTCAAAGAAAGCAGAAGACAGGTGGTAGGTTTCGAGATGCATTGGCTAAAATCGTTGGCACCTCGAAAAACTCTAGTGTCAATCTATATGTGTCCGTATTCATATCCCATCTACTGCAAGCTGTGCAGCAAGATCGACACCACGAAACAACCCGACACTCACAGATGATGACGTTATTGCCACCTCCGAAGCCAGACGAGCGAGACAAGCGAGACCACGCCATCTTGAATGTTTAAAATGAGATGCTTCAAGCTCTGTTATGTTGAGTCTCTAGTCATGCCTCAAAGTAGTAGCATAATGAAGCACCACCAAGTCACCAACTCAAATTCTAATCTGACTTTCCAGTTGAAGGGAGTTTTTCAAATTTTTGTTAGATATTCTTATATGATTCATTTGATTGATTCTAACAAAAGTCTCCAACAATACATACATTTTGAAGATGGCTTTCTTTGTCCAAATTCACAAACCAAATAAACAAAATGGG

Coding sequence (CDS)

ATGACACAACGTAGGATCCCCAAGAAGTTGAGGCGGTGTATTAGACAATATGATCAGTACAAATGGCAGATAAATAGGGGAGTTAAGGAAGAGGAACTGATCAATGAACTTCCAATAGACCTTGGAAGAGACATCAAACGCCTTCTTCACTTTGATGCTTGCTTGGCTAATCTTAAGAAAGTGCCACTTTTTAGTAGCATTGGTGACCGACTATTAGACGTAATGCACGGATATCTCAAGCCAGTGTTATTCACAGAGGATAGCATCGTTTTGCAAGAGGGTGAACCAGTTGTTAGGATGGTATTTATCATGAAAGGAAGGCTGGATGCTACTGGCTTTATGGATATCACAACAACTAACACGGTCGTTCTTAAGGCTGGTGACTTTTATGGTGAAGAGATAATTCCATGGGCAATGGCAGACCGCCTCATTTCTCTTCCAATTTCAACCAGAAGAATTAAATCTCAAACCAAGGTTGAAGCCTTTGCTCTAGAGGCTAATCAGTTGCGATCTGTAGTTAGTTTTACTCTCAACCATGGAGAGTCTGGGCGGCCTTTAAAATATAAGAAGCTTGGCTTGACTACTGTCAAAGAAAGCAGAAGACAGGTGGTAGGTTTCGAGATGCATTGGCTAAAATCGTTGGCACCTCGAAAAACTCTAGTGTCAATCTATATGTGTCCGTATTCATATCCCATCTACTGCAAGCTGTGCAGCAAGATCGACACCACGAAACAACCCGACACTCACAGATGA

Protein sequence

MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKKVPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRLDATGFMDITTTNTVVLKAGDFYGEEIIPWAMADRLISLPISTRRIKSQTKVEAFALEANQLRSVVSFTLNHGESGRPLKYKKLGLTTVKESRRQVVGFEMHWLKSLAPRKTLVSIYMCPYSYPIYCKLCSKIDTTKQPDTHR

Homology

[Close]

BLAST of Lsi05G021170.1 vs. Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 3.8e-38
Identity = 90/182 (49.45%), Postives = 123/182 (67.58%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M+ R +P+ LR+ IR+Y+QY+WQ  RGV+EE L+  LP DL RDIKR L    CL  LKK
Sbjct: 415 MSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHL----CLDLLKK 474

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRL-------DATGF 120
           VPLF  + ++LLD +   L+PVL+TE+S V++EG+PV  M+F+M+GRL         +GF
Sbjct: 475 VPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGF 534

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
                 N V LKA DF GE+++PWA+  +  S  PISTR +++ T+VEAFAL A  L+SV
Sbjct: 535 F-----NAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSV 587

[Close]

BLAST of Lsi05G021170.1 vs. Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2)

HSP 1 Score: 156.0 bits (393), Expect = 5.4e-37
Identity = 89/182 (48.90%), Postives = 120/182 (65.93%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M+ R +P  LR+ IR+Y+QYKWQ  RGV+EE L+  LP DL RDIKR  HF  CL  LKK
Sbjct: 416 MSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKR--HF--CLDLLKK 475

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRL-------DATGF 120
           VPLF  + ++LLD +   LKPVL+TE+S  ++EG+PV  M+F+M+G+L         TGF
Sbjct: 476 VPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGF 535

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
                 N V LK  DF GE+++ WA+  +  S  PISTR +++ T+VEAFAL A+ L+ V
Sbjct: 536 F-----NAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLV 588

[Close]

BLAST of Lsi05G021170.1 vs. Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.1e-37
Identity = 87/182 (47.80%), Postives = 123/182 (67.58%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M+ R +P+ LR+ IR+Y+QYKWQ  RGV EE L++ LP DL RDIKR L    CLA L +
Sbjct: 428 MSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL----CLALLMR 487

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRL-------DATGF 120
           VP+F  + ++LLD +   L+PVL+TE+S +++EG+PV  M+FIM+G+L         TGF
Sbjct: 488 VPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGF 547

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
           +     N+  L AGDF GEE++ WA+     S LPISTR +++  +VEAFAL+A+ L+ V
Sbjct: 548 L-----NSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFV 600

[Close]

BLAST of Lsi05G021170.1 vs. Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.5e-36
Identity = 86/182 (47.25%), Postives = 121/182 (66.48%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M  R +P+ LR  +R+YDQYKW   RGV EE ++  LP DL RDIKR L    CL  +++
Sbjct: 444 MHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHL----CLNLVRR 503

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRLDA-------TGF 120
           VPLF+++ +RLLD +   LKP LFTE + +++EG+PV  M+FI++GRL++       +GF
Sbjct: 504 VPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGF 563

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
                 N  +LK GDF GEE++ WA+  +  S LP STR +K+ T+VEAFALEA +L+ V
Sbjct: 564 F-----NRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 616

[Close]

BLAST of Lsi05G021170.1 vs. Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 7.8e-36
Identity = 85/182 (46.70%), Postives = 121/182 (66.48%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M  R +P+ LR  +R+YDQYKW   RGV EE ++  LP DL RDIKR L    CL  +++
Sbjct: 450 MHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHL----CLNLVRR 509

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRLDA-------TGF 120
           VPLF+++ +RLLD +   LKP L+TE + +++EG+PV  M+FI++GRL++       +GF
Sbjct: 510 VPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGF 569

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
                 N  +LK GDF GEE++ WA+  +  S LP STR +K+ T+VEAFALEA +L+ V
Sbjct: 570 F-----NRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 622

[Close]

BLAST of Lsi05G021170.1 vs. TrEMBL
Match: A0A0A0L8L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119640 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 5.5e-44
Identity = 104/177 (58.76%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M  R +P++LRR IR+YDQYKWQ+NRGVKEEELI+ LP DL RDIK+ L    CLA+LKK
Sbjct: 406 MAHRMLPEELRRRIRRYDQYKWQLNRGVKEEELISNLPKDLMRDIKQHL----CLAHLKK 465

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRLDA---TGFMDIT 120
           VPLFSS+  +LLD M  YLKPVLFT+ S +LQEG+ +  M+FIMKG L      G+ D  
Sbjct: 466 VPLFSSMDKQLLDSMCEYLKPVLFTKKSFILQEGDTIDMMLFIMKGELATLTNCGWKDNL 525

Query: 121 TTNTVVLKAGDFYGEEIIPWAMADRLISLPISTRRIKSQTKVEAFALEANQLRSVVS 175
              T  LKAGDF GEE++ WAM      LPIS R IK+ T+VEAFAL++N+L SV S
Sbjct: 526 YLGT--LKAGDFCGEELVQWAMDPSSTCLPISNRTIKTLTEVEAFALKSNELESVTS 576

[Close]

BLAST of Lsi05G021170.1 vs. TrEMBL
Match: A0A0A0L356_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119630 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.6e-41
Identity = 98/177 (55.37%), Postives = 124/177 (70.06%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M  R +P +LR  IR+YDQYKWQ+NRGVKEEELI+  P DL RDIKR L    CLA+LKK
Sbjct: 416 MAHRMLPDELRYRIRRYDQYKWQLNRGVKEEELISNFPKDLRRDIKRHL----CLAHLKK 475

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRLDATGFMD-ITTT 120
           VPLFSS+  +LLD M  YL+PVLFTE S ++QEG+P+  M+FIMKG++      D     
Sbjct: 476 VPLFSSMDKQLLDAMCEYLRPVLFTEKSFIMQEGDPIDMMLFIMKGKMATIIGCDWKNDL 535

Query: 121 NTVVLKAGDFYGEEIIPWAM--ADRLISLPISTRRIKSQTKVEAFALEANQLRSVVS 175
            +  L AGDF GEE++ WAM       SLPIS R +++ T+VEAFAL+AN+L+ V S
Sbjct: 536 YSDTLNAGDFCGEELVHWAMDPTTNPSSLPISKRTVETLTEVEAFALKANELKFVTS 588

[Close]

BLAST of Lsi05G021170.1 vs. TrEMBL
Match: A0A022QB56_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a024404mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.9e-37
Identity = 94/182 (51.65%), Postives = 121/182 (66.48%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M+ R +P  LR  IR Y+QYKWQ  RGV EE LI+ LP DL RDIKR L    CLA LK+
Sbjct: 426 MSHRLLPDSLRERIRSYEQYKWQETRGVDEENLIHSLPKDLRRDIKRHL----CLALLKR 485

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRL-------DATGF 120
           VP+F  + D+LLD M   LKPVL+TE+S +L+EG+PV  M+FIM+G+L         TGF
Sbjct: 486 VPMFEKMDDQLLDAMCDRLKPVLYTEESYILREGDPVDEMLFIMRGKLFTATTNGGRTGF 545

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
                 N+  LKAGDF GEE++ WA+     S LPISTR +++ ++VEAFAL A+ L+ V
Sbjct: 546 F-----NSDYLKAGDFCGEELLTWALDPTSSSNLPISTRTVQALSEVEAFALTADDLKFV 598

[Close]

BLAST of Lsi05G021170.1 vs. TrEMBL
Match: W9SFS6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000176 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.4e-37
Identity = 93/182 (51.10%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M+ R +P+ LR  IR+Y+QY+WQ  RGV EE LI  LP DL RDIKR L    CLA L +
Sbjct: 26  MSHRLLPENLRERIRRYEQYRWQETRGVDEENLICNLPKDLRRDIKRHL----CLALLMR 85

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRL-------DATGF 120
           VP+F  + D+LLD M   LKPVL+TE+S +++EG+PV  M+FIM+GRL         TGF
Sbjct: 86  VPMFEKMDDQLLDAMCDRLKPVLYTEESYIVREGDPVDEMLFIMRGRLLTVTTNGGRTGF 145

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
                 N+  LKAGDF GEE++ WA+     S LPISTR +++ T+VEAFAL+A+ L+ V
Sbjct: 146 F-----NSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQALTEVEAFALKADDLKFV 198

[Close]

BLAST of Lsi05G021170.1 vs. TrEMBL
Match: W9S9L6_9ROSA (Cyclic nucleotide-gated ion channel 1 OS=Morus notabilis GN=L484_002696 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.4e-37
Identity = 93/182 (51.10%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M+ R +P+ LR  IR+Y+QY+WQ  RGV EE LI  LP DL RDIKR L    CLA L +
Sbjct: 430 MSHRLLPENLRERIRRYEQYRWQETRGVDEENLICNLPKDLRRDIKRHL----CLALLMR 489

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRL-------DATGF 120
           VP+F  + D+LLD M   LKPVL+TE+S +++EG+PV  M+FIM+GRL         TGF
Sbjct: 490 VPMFEKMDDQLLDAMCDRLKPVLYTEESYIVREGDPVDEMLFIMRGRLLTVTTNGGRTGF 549

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
                 N+  LKAGDF GEE++ WA+     S LPISTR +++ T+VEAFAL+A+ L+ V
Sbjct: 550 F-----NSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQALTEVEAFALKADDLKFV 602

[Close]

BLAST of Lsi05G021170.1 vs. TAIR10
Match: AT1G01340.2 (AT1G01340.2 cyclic nucleotide gated channel 10)

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-39
Identity = 90/182 (49.45%), Postives = 123/182 (67.58%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M+ R +P+ LR+ IR+Y+QY+WQ  RGV+EE L+  LP DL RDIKR L    CL  LKK
Sbjct: 415 MSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHL----CLDLLKK 474

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRL-------DATGF 120
           VPLF  + ++LLD +   L+PVL+TE+S V++EG+PV  M+F+M+GRL         +GF
Sbjct: 475 VPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGF 534

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
                 N V LKA DF GE+++PWA+  +  S  PISTR +++ T+VEAFAL A  L+SV
Sbjct: 535 F-----NAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSV 587

[Close]

BLAST of Lsi05G021170.1 vs. TAIR10
Match: AT4G01010.1 (AT4G01010.1 cyclic nucleotide-gated channel 13)

HSP 1 Score: 156.0 bits (393), Expect = 3.1e-38
Identity = 89/182 (48.90%), Postives = 120/182 (65.93%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M+ R +P  LR+ IR+Y+QYKWQ  RGV+EE L+  LP DL RDIKR  HF  CL  LKK
Sbjct: 416 MSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKR--HF--CLDLLKK 475

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRL-------DATGF 120
           VPLF  + ++LLD +   LKPVL+TE+S  ++EG+PV  M+F+M+G+L         TGF
Sbjct: 476 VPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGF 535

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
                 N V LK  DF GE+++ WA+  +  S  PISTR +++ T+VEAFAL A+ L+ V
Sbjct: 536 F-----NAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLV 588

[Close]

BLAST of Lsi05G021170.1 vs. TAIR10
Match: AT5G53130.1 (AT5G53130.1 cyclic nucleotide gated channel 1)

HSP 1 Score: 155.6 bits (392), Expect = 4.0e-38
Identity = 87/182 (47.80%), Postives = 123/182 (67.58%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M+ R +P+ LR+ IR+Y+QYKWQ  RGV EE L++ LP DL RDIKR L    CLA L +
Sbjct: 428 MSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL----CLALLMR 487

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRL-------DATGF 120
           VP+F  + ++LLD +   L+PVL+TE+S +++EG+PV  M+FIM+G+L         TGF
Sbjct: 488 VPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGF 547

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
           +     N+  L AGDF GEE++ WA+     S LPISTR +++  +VEAFAL+A+ L+ V
Sbjct: 548 L-----NSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFV 600

[Close]

BLAST of Lsi05G021170.1 vs. TAIR10
Match: AT1G15990.1 (AT1G15990.1 cyclic nucleotide gated channel 7)

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-37
Identity = 86/182 (47.25%), Postives = 121/182 (66.48%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M  R +P+ LR  +R+YDQYKW   RGV EE ++  LP DL RDIKR L    CL  +++
Sbjct: 415 MHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHL----CLNLVRR 474

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRLDA-------TGF 120
           VPLF+++ +RLLD +   LKP LFTE + +++EG+PV  M+FI++GRL++       +GF
Sbjct: 475 VPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGF 534

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
                 N  +LK GDF GEE++ WA+  +  S LP STR +K+ T+VEAFALEA +L+ V
Sbjct: 535 F-----NRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 587

[Close]

BLAST of Lsi05G021170.1 vs. TAIR10
Match: AT1G19780.1 (AT1G19780.1 cyclic nucleotide gated channel 8)

HSP 1 Score: 152.1 bits (383), Expect = 4.4e-37
Identity = 85/182 (46.70%), Postives = 121/182 (66.48%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M  R +P+ LR  +R+YDQYKW   RGV EE ++  LP DL RDIKR L    CL  +++
Sbjct: 450 MHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHL----CLNLVRR 509

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRLDA-------TGF 120
           VPLF+++ +RLLD +   LKP L+TE + +++EG+PV  M+FI++GRL++       +GF
Sbjct: 510 VPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGF 569

Query: 121 MDITTTNTVVLKAGDFYGEEIIPWAMADRLIS-LPISTRRIKSQTKVEAFALEANQLRSV 175
                 N  +LK GDF GEE++ WA+  +  S LP STR +K+ T+VEAFALEA +L+ V
Sbjct: 570 F-----NRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 622

[Close]

BLAST of Lsi05G021170.1 vs. NCBI nr
Match: gi|659074993|ref|XP_008437906.1| (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 5.1e-51
Identity = 106/160 (66.25%), Postives = 129/160 (80.62%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M QR +PK LRR IRQ+D+YKWQ+NRGVKEEE++N+LPI+L RDIK LL  DACL NLKK
Sbjct: 380 MRQRMLPKPLRRRIRQFDEYKWQLNRGVKEEEVMNDLPINLKRDIKPLLRLDACLVNLKK 439

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRLDATGFMDIT--- 120
           VPLFS+I DRLLD+MHG LKPVLFTEDSI+L E +P+  MVFI+KG+L AT   +I+   
Sbjct: 440 VPLFSNIDDRLLDLMHGDLKPVLFTEDSIILLENKPIDMMVFIIKGKLRATSRRNISNYV 499

Query: 121 TTNTVVLKAGDFYGEEIIPWAMADRLISLPISTRRIKSQT 158
           + + VVL+AGDFYGEE+IPWAMA+ +   PIST  IKS T
Sbjct: 500 SKSDVVLEAGDFYGEELIPWAMANHITPHPISTSTIKSLT 539

[Close]

BLAST of Lsi05G021170.1 vs. NCBI nr
Match: gi|659074989|ref|XP_008437904.1| (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 5.1e-51
Identity = 106/160 (66.25%), Postives = 129/160 (80.62%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M QR +PK LRR IRQ+D+YKWQ+NRGVKEEE++N+LPI+L RDIK LL  DACL NLKK
Sbjct: 395 MRQRMLPKPLRRRIRQFDEYKWQLNRGVKEEEVMNDLPINLKRDIKPLLRLDACLVNLKK 454

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRLDATGFMDIT--- 120
           VPLFS+I DRLLD+MHG LKPVLFTEDSI+L E +P+  MVFI+KG+L AT   +I+   
Sbjct: 455 VPLFSNIDDRLLDLMHGDLKPVLFTEDSIILLENKPIDMMVFIIKGKLRATSRRNISNYV 514

Query: 121 TTNTVVLKAGDFYGEEIIPWAMADRLISLPISTRRIKSQT 158
           + + VVL+AGDFYGEE+IPWAMA+ +   PIST  IKS T
Sbjct: 515 SKSDVVLEAGDFYGEELIPWAMANHITPHPISTSTIKSLT 554

[Close]

BLAST of Lsi05G021170.1 vs. NCBI nr
Match: gi|778676918|ref|XP_004134306.2| (PREDICTED: cyclic nucleotide-gated ion channel 1 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 7.8e-44
Identity = 104/177 (58.76%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M  R +P++LRR IR+YDQYKWQ+NRGVKEEELI+ LP DL RDIK+ L    CLA+LKK
Sbjct: 406 MAHRMLPEELRRRIRRYDQYKWQLNRGVKEEELISNLPKDLMRDIKQHL----CLAHLKK 465

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRLDA---TGFMDIT 120
           VPLFSS+  +LLD M  YLKPVLFT+ S +LQEG+ +  M+FIMKG L      G+ D  
Sbjct: 466 VPLFSSMDKQLLDSMCEYLKPVLFTKKSFILQEGDTIDMMLFIMKGELATLTNCGWKDNL 525

Query: 121 TTNTVVLKAGDFYGEEIIPWAMADRLISLPISTRRIKSQTKVEAFALEANQLRSVVS 175
              T  LKAGDF GEE++ WAM      LPIS R IK+ T+VEAFAL++N+L SV S
Sbjct: 526 YLGT--LKAGDFCGEELVQWAMDPSSTCLPISNRTIKTLTEVEAFALKSNELESVTS 576

[Close]

BLAST of Lsi05G021170.1 vs. NCBI nr
Match: gi|659074995|ref|XP_008437907.1| (PREDICTED: cyclic nucleotide-gated ion channel 1 [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 5.6e-42
Identity = 100/177 (56.50%), Postives = 124/177 (70.06%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M  R +P +LR  IR+YDQYKWQ+NRGVKEEELI+ LP DL RDIKR L    CLA LKK
Sbjct: 416 MAHRMLPDELRYRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKRHL----CLAQLKK 475

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRLDATGFMD-ITTT 120
           VPLFSS+  +LLD M  YL+PVLFTE S ++QEG+P+  M+FIMKG+L      D     
Sbjct: 476 VPLFSSMDKQLLDAMCEYLRPVLFTEKSFIMQEGDPIDMMLFIMKGKLATIIGCDWKNDL 535

Query: 121 NTVVLKAGDFYGEEIIPWAM--ADRLISLPISTRRIKSQTKVEAFALEANQLRSVVS 175
            +  L AGDF GEE++ WAM       SLPIS R +++ T+VEAFAL+AN+L+ V S
Sbjct: 536 YSATLNAGDFCGEELVHWAMDPTTNTSSLPISKRTVETLTEVEAFALKANELKFVTS 588

[Close]

BLAST of Lsi05G021170.1 vs. NCBI nr
Match: gi|659074987|ref|XP_008437903.1| (PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 7.3e-42
Identity = 101/177 (57.06%), Postives = 123/177 (69.49%), Query Frame = 1


Query: 1   MTQRRIPKKLRRCIRQYDQYKWQINRGVKEEELINELPIDLGRDIKRLLHFDACLANLKK 60
           M  R +P++LR+ IR+YDQYKWQ+NRGVKEEELI  LP DL RDIK+ L    CLA+LKK
Sbjct: 406 MAHRMLPEELRQRIRRYDQYKWQLNRGVKEEELICNLPKDLRRDIKQHL----CLAHLKK 465

Query: 61  VPLFSSIGDRLLDVMHGYLKPVLFTEDSIVLQEGEPVVRMVFIMKGRL---DATGFMDIT 120
           VPLFS +  +LLD M  YLKPVLFT+ S +LQEG+ +  M+FIMKG L      G+ +  
Sbjct: 466 VPLFSGMDKQLLDSMCEYLKPVLFTKKSFILQEGDTIDMMLFIMKGELATITTCGWKNDP 525

Query: 121 TTNTVVLKAGDFYGEEIIPWAMADRLISLPISTRRIKSQTKVEAFALEANQLRSVVS 175
              T  LKAGDF GEE++ WAM      LPIS R IK+ T+VEAFAL  N+L SV S
Sbjct: 526 YLGT--LKAGDFCGEELVQWAMDPSSTCLPISNRTIKTLTEVEAFALNGNELESVTS 576

The following BLAST results are available for this feature:

BLAST of Lsi05G021170.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CNG10_ARATH	3.8e-38	49.45	Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC1...	[more]
CNG13_ARATH	5.4e-37	48.90	Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC1...	[more]
CNGC1_ARATH	7.1e-37	47.80	Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1	[more]
CNGC7_ARATH	3.5e-36	47.25	Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 ...	[more]
CNGC8_ARATH	7.8e-36	46.70	Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 ...	[more]

BLAST of Lsi05G021170.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8L1_CUCSA	5.5e-44	58.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119640 PE=4 SV=1	[more]
A0A0A0L356_CUCSA	5.6e-41	55.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119630 PE=4 SV=1	[more]
A0A022QB56_ERYGU	4.9e-37	51.65	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a024404mg PE=4 SV=1	[more]
W9SFS6_9ROSA	8.4e-37	51.10	Uncharacterized protein OS=Morus notabilis GN=L484_000176 PE=4 SV=1	[more]
W9S9L6_9ROSA	8.4e-37	51.10	Cyclic nucleotide-gated ion channel 1 OS=Morus notabilis GN=L484_002696 PE=4 SV=...	[more]

BLAST of Lsi05G021170.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01340.2	2.1e-39	49.45	cyclic nucleotide gated channel 10	[more]
AT4G01010.1	3.1e-38	48.90	cyclic nucleotide-gated channel 13	[more]
AT5G53130.1	4.0e-38	47.80	cyclic nucleotide gated channel 1	[more]
AT1G15990.1	2.0e-37	47.25	cyclic nucleotide gated channel 7	[more]
AT1G19780.1	4.4e-37	46.70	cyclic nucleotide gated channel 8	[more]

BLAST of Lsi05G021170.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074993\|ref\|XP_008437906.1\|	5.1e-51	66.25	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo]	[more]
gi\|659074989\|ref\|XP_008437904.1\|	5.1e-51	66.25	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo]	[more]
gi\|778676918\|ref\|XP_004134306.2\|	7.8e-44	58.76	PREDICTED: cyclic nucleotide-gated ion channel 1 [Cucumis sativus]	[more]
gi\|659074995\|ref\|XP_008437907.1\|	5.6e-42	56.50	PREDICTED: cyclic nucleotide-gated ion channel 1 [Cucumis melo]	[more]
gi\|659074987\|ref\|XP_008437903.1\|	7.3e-42	57.06	PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR018490	cNMP-bd-like
IPR014710	RmlC-like_jellyroll
IPR000595	cNMP-bd_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi05G021170	Lsi05G021170	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G021170.1.CDS.1	Lsi05G021170.1.CDS.1	CDS
Lsi05G021170.1.CDS.2	Lsi05G021170.1.CDS.2	CDS
Lsi05G021170.1.CDS.3	Lsi05G021170.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G021170.1.three_prime_UTR.1	Lsi05G021170.1.three_prime_UTR.1	three_prime_UTR
Lsi05G021170.1.three_prime_UTR.2	Lsi05G021170.1.three_prime_UTR.2	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi05G021170.1	Lsi05G021170.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000595	Cyclic nucleotide-binding domain	PROFILE	PS50042	CNMP_BINDING_3	coord: 63..132 score: 9
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 61..173 score: 6.9
IPR018490	Cyclic nucleotide-binding-like	unknown	SSF51206	cAMP-binding domain-like	coord: 1..173 score: 1.93
None	No IPR available	GENE3D	G3DSA:1.10.287.630		coord: 1..46 score: 5.
None	No IPR available	PANTHER	PTHR10217	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	coord: 1..174 score: 1.1
None	No IPR available	PANTHER	PTHR10217:SF465	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 11-RELATED	coord: 1..174 score: 1.1