Lsi04G024380.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAATAAGGGAATGATGAGCGGCAGCAAAGGTAATTATTTGAGGAAGTCCAGAACCTTTGTCCTGCAGAAGAACCAAAGCTCGATGCAGCAGGTAGAATCCGGAGGAGATAATAATAAACAAAATAATAGTAATATTGAGAAATTCCCAGTGTCCCCTCAGCTGATGTATGGGGAAGAGATGGTCCATTTTAGCCATCCTCGACACCGACTGTCCCGGATGTGCCTTCCGGACCTGTTTACGTGCAGTGGGTGCAAGGAATACGGGGCCGGCAACCGATTCAGTTGCCAACAATGTGATTTCCAGCTTCACGACTTCTGCGCCTTCTCTCCTCCAGCCCTCAAGGCCCACCCCTTCCATTCCCACCATCAGCTTCTCTTTTACTCCAAGCCAGGTATGTGTACTACTGTGTGTGTATATATATAGTATTATTTAATTCATTCATTCAATTAATTAATTATGAAGTTTTAATTTTAAATTAGTGAAAGGCGGCATCATGCAGTCCAAGTGCGACATTTGCGCGAAGCCCATAAAAGGATTTGCGTTCCGATGTGGTGTGTGCAGCTTCCAGATGCATCCCTGCTGCGCGATGTTATCCTCTGAAATGAAGGTGCCGTCGATGCACCCGCACGCGCTGAGGATGCTGGGAGCTGCAACATCATCATCATCAGTAGTTGATCACCCCAGCAACTTGATGGTGTGCGGTGAGTGCAAGAGAAGGAGGTCTGGGAGGGTGTACCGTTGCACCGTGTGCGAGTATCACGTGCATGCAGTTTGCGCAAAGAGCGTGAAAAACGGTCTCCGTGACAACGGTCACAAGGGAACCGAGAAGCCCAGCGTGCTGGGGACCGCCGCAAGACTCGCTTCCCAGGTCGTCGTCGAGTTCTTGGGAGGCATCATCGAGGGCCTCGGAGAAGGGGTTGGCGAAGCCTTCGTCCAGAACATCAACGGCAAGGCCGCCCCCTCACCCGCCCTCCATCGTCGTTAATTCATATATCTCTGCCTCCCTCTTCATCAGCTCCCTCCAAATTATATACCAAAAAAGAAAAAAAACCACCACATATATACTTCCCTTCTACCACCGCCTCCCTTCCATCCTCATCTACTCTCTCTTTCTTTCTTCCCTATTTTTCTTATTTTTCTCTTTCTCTCCAATTCCCCCCCTTTTTCTTTCCATATATATTATTTGAAAAATACTTATCTACTAGTTTCCACCTATTTAATTTATTGGCAATTCTTTTTTGTTGTATGAATGGCATGTACTTTGCACGGTAAATATATGGGTGCACTACAATTAGCATACAAGTATTACTCCTATTATTTTCTTTGCAATCTGATCTCTTCATTTCTCATTGTTTCCATTTTCATACGTATGGACTATTGGAAGCGTAGTGTGTTTTGTAATCCACATGTAAATTATTCGAAGCGTAGTGTGTTTTGTAATCCACATGTAAATTATTTTCATATTTGCATTTTTGTCAGTTTCGTTTTTTTTCGAGGTCCCACTTTTTTCGTGTATGAAAATGTTATATGATATTAAATTTACATCTTTTCTTAATGATAGATGTCCACATACCACCTAAGTTTTTTTCTAATTTATTCTACCATTTCTAGTCGTTGCTCGATAGTCAAATCAAACTATATTTTATTTTAGAAAAATA AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAATAAGGGAATGATGAGCGGCAGCAAAGGTAATTATTTGAGGAAGTCCAGAACCTTTGTCCTGCAGAAGAACCAAAGCTCGATGCAGCAGGTAGAATCCGGAGGAGATAATAATAAACAAAATAATAGTAATATTGAGAAATTCCCAGTGTCCCCTCAGCTGATGTATGGGGAAGAGATGGTCCATTTTAGCCATCCTCGACACCGACTGTCCCGGATGTGCCTTCCGGACCTGTTTACGTGCAGTGGGTGCAAGGAATACGGGGCCGGCAACCGATTCAGTTGCCAACAATGTGATTTCCAGCTTCACGACTTCTGCGCCTTCTCTCCTCCAGCCCTCAAGGCCCACCCCTTCCATTCCCACCATCAGCTTCTCTTTTACTCCAAGCCAGTGAAAGGCGGCATCATGCAGTCCAAGTGCGACATTTGCGCGAAGCCCATAAAAGGATTTGCGTTCCGATGTGGTGTGTGCAGCTTCCAGATGCATCCCTGCTGCGCGATGTTATCCTCTGAAATGAAGGTGCCGTCGATGCACCCGCACGCGCTGAGGATGCTGGGAGCTGCAACATCATCATCATCAGTAGTTGATCACCCCAGCAACTTGATGGTGTGCGGTGAGTGCAAGAGAAGGAGGTCTGGGAGGGTGTACCGTTGCACCGTGTGCGAGTATCACGTGCATGCAGTTTGCGCAAAGAGCGTGAAAAACGGTCTCCGTGACAACGGTCACAAGGGAACCGAGAAGCCCAGCGTGCTGGGGACCGCCGCAAGACTCGCTTCCCAGGTCGTCGTCGAGTTCTTGGGAGGCATCATCGAGGGCCTCGGAGAAGGGGTTGGCGAAGCCTTCGTCCAGAACATCAACGGCAAGGCCGCCCCCTCACCCGCCCTCCATCGTCGTTAATTCATATATCTCTGCCTCCCTCTTCATCAGCTCCCTCCAAATTATATACCAAAAAAGAAAAAAAACCACCACATATATACTTCCCTTCTACCACCGCCTCCCTTCCATCCTCATCTACTCTCTCTTTCTTTCTTCCCTATTTTTCTTATTTTTCTCTTTCTCTCCAATTCCCCCCCTTTTTCTTTCCATATATATTATTTGAAAAATACTTATCTACTAGTTTCCACCTATTTAATTTATTGGCAATTCTTTTTTGTTGTATGAATGGCATGTACTTTGCACGGTAAATATATGGGTGCACTACAATTAGCATACAAGTATTACTCCTATTATTTTCTTTGCAATCTGATCTCTTCATTTCTCATTGTTTCCATTTTCATACGTATGGACTATTGGAAGCGTAGTGTGTTTTGTAATCCACATGTAAATTATTCGAAGCGTAGTGTGTTTTGTAATCCACATGTAAATTATTTTCATATTTGCATTTTTGTCAGTTTCGTTTTTTTTCGAGGTCCCACTTTTTTCGTGTATGAAAATGTTATATGATATTAAATTTACATCTTTTCTTAATGATAGATGTCCACATACCACCTAAGTTTTTTTCTAATTTATTCTACCATTTCTAGTCGTTGCTCGATAGTCAAATCAAACTATATTTTATTTTAGAAAAATA ATGAATAAGGGAATGATGAGCGGCAGCAAAGGTAATTATTTGAGGAAGTCCAGAACCTTTGTCCTGCAGAAGAACCAAAGCTCGATGCAGCAGGTAGAATCCGGAGGAGATAATAATAAACAAAATAATAGTAATATTGAGAAATTCCCAGTGTCCCCTCAGCTGATGTATGGGGAAGAGATGGTCCATTTTAGCCATCCTCGACACCGACTGTCCCGGATGTGCCTTCCGGACCTGTTTACGTGCAGTGGGTGCAAGGAATACGGGGCCGGCAACCGATTCAGTTGCCAACAATGTGATTTCCAGCTTCACGACTTCTGCGCCTTCTCTCCTCCAGCCCTCAAGGCCCACCCCTTCCATTCCCACCATCAGCTTCTCTTTTACTCCAAGCCAGTGAAAGGCGGCATCATGCAGTCCAAGTGCGACATTTGCGCGAAGCCCATAAAAGGATTTGCGTTCCGATGTGGTGTGTGCAGCTTCCAGATGCATCCCTGCTGCGCGATGTTATCCTCTGAAATGAAGGTGCCGTCGATGCACCCGCACGCGCTGAGGATGCTGGGAGCTGCAACATCATCATCATCAGTAGTTGATCACCCCAGCAACTTGATGGTGTGCGGTGAGTGCAAGAGAAGGAGGTCTGGGAGGGTGTACCGTTGCACCGTGTGCGAGTATCACGTGCATGCAGTTTGCGCAAAGAGCGTGAAAAACGGTCTCCGTGACAACGGTCACAAGGGAACCGAGAAGCCCAGCGTGCTGGGGACCGCCGCAAGACTCGCTTCCCAGGTCGTCGTCGAGTTCTTGGGAGGCATCATCGAGGGCCTCGGAGAAGGGGTTGGCGAAGCCTTCGTCCAGAACATCAACGGCAAGGCCGCCCCCTCACCCGCCCTCCATCGTCGTTAA MNKGMMSGSKGNYLRKSRTFVLQKNQSSMQQVESGGDNNKQNNSNIEKFPVSPQLMYGEEMVHFSHPRHRLSRMCLPDLFTCSGCKEYGAGNRFSCQQCDFQLHDFCAFSPPALKAHPFHSHHQLLFYSKPVKGGIMQSKCDICAKPIKGFAFRCGVCSFQMHPCCAMLSSEMKVPSMHPHALRMLGAATSSSSVVDHPSNLMVCGECKRRRSGRVYRCTVCEYHVHAVCAKSVKNGLRDNGHKGTEKPSVLGTAARLASQVVVEFLGGIIEGLGEGVGEAFVQNINGKAAPSPALHRR
BLAST of Lsi04G024380.1 vs. TrEMBL
Match: A0A0A0L0U6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665110 PE=4 SV=1) HSP 1 Score: 507.7 bits (1306), Expect = 9.8e-141 Identity = 247/303 (81.52%), Postives = 264/303 (87.13%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. TrEMBL
Match: M5WGS5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017191mg PE=4 SV=1) HSP 1 Score: 390.2 bits (1001), Expect = 2.3e-105 Identity = 186/273 (68.13%), Postives = 218/273 (79.85%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. TrEMBL
Match: I1KKM5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G159100 PE=4 SV=1) HSP 1 Score: 355.9 bits (912), Expect = 4.8e-95 Identity = 171/293 (58.36%), Postives = 221/293 (75.43%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. TrEMBL
Match: K7N0L6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G006200 PE=4 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 1.8e-94 Identity = 171/293 (58.36%), Postives = 221/293 (75.43%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. TrEMBL
Match: A0A0B2QPZ2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_043761 PE=4 SV=1) HSP 1 Score: 352.1 bits (902), Expect = 6.9e-94 Identity = 164/251 (65.34%), Postives = 200/251 (79.68%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. TAIR10
Match: AT1G20990.1 (AT1G20990.1 Cysteine/Histidine-rich C1 domain family protein) HSP 1 Score: 331.6 bits (849), Expect = 4.9e-91 Identity = 164/286 (57.34%), Postives = 210/286 (73.43%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. TAIR10
Match: AT2G37820.1 (AT2G37820.1 Cysteine/Histidine-rich C1 domain family protein) HSP 1 Score: 100.5 bits (249), Expect = 1.8e-21 Identity = 57/188 (30.32%), Postives = 87/188 (46.28%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. TAIR10
Match: AT2G37800.1 (AT2G37800.1 Cysteine/Histidine-rich C1 domain family protein) HSP 1 Score: 96.3 bits (238), Expect = 3.4e-20 Identity = 63/198 (31.82%), Postives = 87/198 (43.94%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. TAIR10
Match: AT2G37780.1 (AT2G37780.1 Cysteine/Histidine-rich C1 domain family protein) HSP 1 Score: 82.4 bits (202), Expect = 5.1e-16 Identity = 41/128 (32.03%), Postives = 61/128 (47.66%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. TAIR10
Match: AT2G42060.1 (AT2G42060.1 Cysteine/Histidine-rich C1 domain family protein) HSP 1 Score: 82.4 bits (202), Expect = 5.1e-16 Identity = 59/190 (31.05%), Postives = 84/190 (44.21%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. NCBI nr
Match: gi|659105226|ref|XP_008453038.1| (PREDICTED: uncharacterized protein LOC103493863 [Cucumis melo]) HSP 1 Score: 515.4 bits (1326), Expect = 6.7e-143 Identity = 252/310 (81.29%), Postives = 267/310 (86.13%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. NCBI nr
Match: gi|778697312|ref|XP_004145611.2| (PREDICTED: uncharacterized protein LOC101220216 [Cucumis sativus]) HSP 1 Score: 507.7 bits (1306), Expect = 1.4e-140 Identity = 247/303 (81.52%), Postives = 264/303 (87.13%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. NCBI nr
Match: gi|595861084|ref|XP_007211272.1| (hypothetical protein PRUPE_ppa017191mg [Prunus persica]) HSP 1 Score: 390.2 bits (1001), Expect = 3.3e-105 Identity = 186/273 (68.13%), Postives = 218/273 (79.85%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. NCBI nr
Match: gi|470128299|ref|XP_004300081.1| (PREDICTED: uncharacterized protein LOC101308578 [Fragaria vesca subsp. vesca]) HSP 1 Score: 390.2 bits (1001), Expect = 3.3e-105 Identity = 187/283 (66.08%), Postives = 230/283 (81.27%), Query Frame = 1
BLAST of Lsi04G024380.1 vs. NCBI nr
Match: gi|645264877|ref|XP_008237886.1| (PREDICTED: uncharacterized protein LOC103336604 [Prunus mume]) HSP 1 Score: 387.9 bits (995), Expect = 1.6e-104 Identity = 187/286 (65.38%), Postives = 226/286 (79.02%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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