Lsi04G018330.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G018330.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr04 : 25458101 .. 25460394 (+)
Sequence length	1459

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTGATGAGAGGAGAACCCCTGGTGAGGAAGCTCGCCGTGTTCGCCAAGTACGTTGTTCTTCCGGGAGCCATGGCCGCCGCTCTCGTTTACTCTCCTCCCGATTATGTCTACTACAAGAATGACGATAAGTCTTCCAAATAGGACTCTTTCCCCTTCTTTCAACTCTTCGGTACGTCTTCATCTGTTCTCCCTTAGGGTTACCTTTTTACACTTCATCCTTGTTCTATTCTTTTCCTGAAATGTCGATTCATGATTTTATCCGACTGCTGCATATTGTATGTCAACGAACATCTTACTTTCTATTTGAATAAATGCTCGTTGTGGTTTCAATCAGCAATTGATGTTTCGTGTATCTTATAATCATTAGTTACGATGTTATATCTGATGGATTTGTAATTATATTCCTGATTTTGATTAATTAAGATACTCGAGCTTATAATTTCATCGTTGTTGTGATTGTGGCGTTTACAAAACCTATTAAACTTGTCTCTACATTTATTGCCCTTCTTCGCGTATCTTCTAATCGAAACGATTCTTGATAATTCTGTTTTGACTTTGCGTGAAATTAGACCGAATAAACTAGGTTTGGAGAGGATGAAAGAAGTAGGCTCTATTAGATCCAACTTGCGGAACGTTTATCTTTTTCTAGGATCATCATCTAGCTGATCAGCTATATAATGGGCGTATTAGTAGTCGATCTTCTTAGCTTCATCATTGGTTATGCTTCTATTACTTGAACGTAAGGTTTCTTGTTCTTGATACTAACCACCCTAACACACACACACAGGGAAAAGAAAATTTCCTAAGCATCAGCCATCCATTACCCATAGGATTTATAGGCTGACTATCTATGATGCATGATAATTTCTTGAAACCTCTTTTCTCGACATATGGGTCTCAAATTATGGCTTAAATTTTTAGAAAAAAGAAAGTTTGGGAATCACGCTGAATGCTATATGAGCATTATAAGCTTTGGTATTTGTTCTATTATCTCCCACTCGCTGTGTTGGAATTGGAGTTGATTTTCTGTTTTCTTGTGATGCAGGACCGTCTGATCATGTAGGCTTGGATTTGCAGTGTTGTATTTCTCTTATGTTGATAATGGTGTGTACTGGACTTATTATCATGTCTCAATAACTAGTCCTTTGTTTAACTTTCGTGCCTTCATCTTGGGAGAAGTAATAACCATTTGTTTCCTTGAAGAATACTCAAAACAGGAAGTATAAATTTTTTTTCCCCTCTTCTCTTTCCCTTGATAAATTTTGAAGTGTCTCACCATGAGATGGAAGTGAGAACTTTACAGAATACATAACTGTAAATTTCATCTGCTTATATGAAAATTAGAACAGTTATAAAATGCTAGAAATGAAGAATTTCCCACGACCCACACCAAAATATGAATATTCACAGTTCACAGTCCTTATAGTACCAACACACAGTCCTTATAGTACCAACACTTTGGTCCTTGCCCACTGTTGAATTGAAATCAAAATTTCCACTTTTAGGTGACTAGGTGGAGTGTTACAATGACAGAGGATAGAGGTGCTTCAGAGAGATACTTATCTTAGCAAATAATCAAAGCCAGAGTCCCCAACTGGGTTGGGTGTGTGTTAATAACAGGGGAAGAAGATACTTGGAGCAGACTCTCTGCCATAATATCAACTGAGTAAATTTTAGTTGCTAATTACCAAGCTTGGTTACTGTTCGATTTAGTTAAAAAATTTCATAAAATGTTCTTGTTGCAAGTGCCACCATTTCTCTTCAAGTCTCAGGACAATAGTAATTGTAACTGTTATTTAATAAGTAGAGATGACAATAACTCTGTCTCTCTAAACAAATCTTTGGCACGACATAAAGGTAGAGGGAACTCAAAGATCAACACATCATGAGAATGACAAGTTCAGAGGAGTAGTTTATCTAACTCTCTCTTCACTTTCACCTCTTCACCTCACCCAGTGTATGTAAATTTTTTTATTTTGAACTGGAAAATTAGAAAGAAATTGTATACAATGATTGAGGGAAGGGGGTGGGTGGCATGGAAAGAAGAGGATAATGGACTACACTGCAAACTGTGTCAGGTATTCTTGTGGCCGAATGACTCTGTTTTTTATGAATGGGTTGGGGACAAAACTACAAAGGATTTGGGGTCCTTTGGCTCACAGTTGATTCAAGATTTTAGAATCCAAACTTGATTTTGATGGCCCCATACCGTACTCGTTTTATTTTGTCATTACTCATGCTGTGAAGTAGATATGTCTGTTCTCTGATATATACTAATAATAATTCTT

mRNA sequence

ATGGCGCTGATGAGAGGAGAACCCCTGGTGAGGAAGCTCGCCGTGTTCGCCAAGTACGTTGTTCTTCCGGGAGCCATGGCCGCCGCTCTCGTTTACTCTCCTCCCGATTATGGTTACCTTTTTACACTTCATCCTTGTTCTATTCTTTTCCTGAAATGTCGATTCATGATTTTATCCGACTGCTGCATATTTTACGATGTTATATCTGATGGATTTGACCGTCTGATCATGTAGGCTTGGATTTGCAGTGTTGTATTTCTCTTATGTTGATAATGGTGTGTACTGGACTTATTATCATGTCTCAATAACTAGTCCTTTGTTTAACTTTCGTGCCTTCATCTTGGGAGAAGTAATAACCATTTGTTTCCTTGAAGAATACTCAAAACAGGAAGTATAAATTTTTTTTCCCCTCTTCTCTTTCCCTTGATAAATTTTGAAGTGTCTCACCATGAGATGGAAGTGAGAACTTTACAGAATACATAACTGTAAATTTCATCTGCTTATATGAAAATTAGAACAGTTATAAAATGCTAGAAATGAAGAATTTCCCACGACCCACACCAAAATATGAATATTCACAGTTCACAGTCCTTATAGTACCAACACACAGTCCTTATAGTACCAACACTTTGGTCCTTGCCCACTGTTGAATTGAAATCAAAATTTCCACTTTTAGGTGACTAGGTGGAGTGTTACAATGACAGAGGATAGAGGTGCTTCAGAGAGATACTTATCTTAGCAAATAATCAAAGCCAGAGTCCCCAACTGGGTTGGGTGTGTGTTAATAACAGGGGAAGAAGATACTTGGAGCAGACTCTCTGCCATAATATCAACTGAGTAAATTTTAGTTGCTAATTACCAAGCTTGGTTACTGTTCGATTTAGTTAAAAAATTTCATAAAATGTTCTTGTTGCAAGTGCCACCATTTCTCTTCAAGTCTCAGGACAATAGTAATTGTAACTGTTATTTAATAAGTAGAGATGACAATAACTCTGTCTCTCTAAACAAATCTTTGGCACGACATAAAGGTAGAGGGAACTCAAAGATCAACACATCATGAGAATGACAAGTTCAGAGGAGTAGTTTATCTAACTCTCTCTTCACTTTCACCTCTTCACCTCACCCAGTGTATGTAAATTTTTTTATTTTGAACTGGAAAATTAGAAAGAAATTGTATACAATGATTGAGGGAAGGGGGTGGGTGGCATGGAAAGAAGAGGATAATGGACTACACTGCAAACTGTGTCAGGTATTCTTGTGGCCGAATGACTCTGTTTTTTATGAATGGGTTGGGGACAAAACTACAAAGGATTTGGGGTCCTTTGGCTCACAGTTGATTCAAGATTTTAGAATCCAAACTTGATTTTGATGGCCCCATACCGTACTCGTTTTATTTTGTCATTACTCATGCTGTGAAGTAGATATGTCTGTTCTCTGATATATACTAATAATAATTCTT

Coding sequence (CDS)

ATGGCGCTGATGAGAGGAGAACCCCTGGTGAGGAAGCTCGCCGTGTTCGCCAAGTACGTTGTTCTTCCGGGAGCCATGGCCGCCGCTCTCGTTTACTCTCCTCCCGATTATGGTTACCTTTTTACACTTCATCCTTGTTCTATTCTTTTCCTGAAATGTCGATTCATGATTTTATCCGACTGCTGCATATTTTACGATGTTATATCTGATGGATTTGACCGTCTGATCATGTAG

Protein sequence

MALMRGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYGYLFTLHPCSILFLKCRFMILSDCCIFYDVISDGFDRLIM

Homology

[Close]

BLAST of Lsi04G018330.1 vs. TrEMBL
Match: A0A0A0L4N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664390 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-09
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MALMRGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYGY 40
          MALM+GEPL+RKLAVFA Y+VLPGAMAAAL+YSPPDY Y
Sbjct: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIY 39

[Close]

BLAST of Lsi04G018330.1 vs. TrEMBL
Match: V4T670_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003083mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-08
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 1  MALMRGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYG 39
          MA+MRGEPLV KLA  AKYV+LPG+MAAAL+YSPP YG
Sbjct: 1  MAIMRGEPLVAKLAALAKYVILPGSMAAALIYSPPQYG 38

[Close]

BLAST of Lsi04G018330.1 vs. TrEMBL
Match: A0A067H074_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035474mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-08
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 1  MALMRGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYG 39
          MA+MRGEPLV KLA  AKYV+LPG+MAAAL+YSPP YG
Sbjct: 1  MAIMRGEPLVAKLAALAKYVILPGSMAAALIYSPPQYG 38

[Close]

BLAST of Lsi04G018330.1 vs. TrEMBL
Match: K4AYJ4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.1e-07
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1  MALMRGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYGYLF 42
          M+LM+GEPLVRK+A+ AKY V PGAMAAA++YSPP Y   F
Sbjct: 1  MSLMKGEPLVRKIALIAKYAVFPGAMAAAVIYSPPTYASYF 41

[Close]

BLAST of Lsi04G018330.1 vs. NCBI nr
Match: gi|700200374|gb|KGN55532.1| (hypothetical protein Csa_4G664390 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-09
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MALMRGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYGY 40
          MALM+GEPL+RKLAVFA Y+VLPGAMAAAL+YSPPDY Y
Sbjct: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIY 39

[Close]

BLAST of Lsi04G018330.1 vs. NCBI nr
Match: gi|645224469|ref|XP_008219124.1| (PREDICTED: uncharacterized protein LOC103319370 [Prunus mume])

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1   MALMRGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDY 38
           M LMRGEPLV KLAV AKYVVLPGAM AALVYSPPDY
Sbjct: 127 MTLMRGEPLVTKLAVLAKYVVLPGAMVAALVYSPPDY 163

[Close]

BLAST of Lsi04G018330.1 vs. NCBI nr
Match: gi|567885737|ref|XP_006435427.1| (hypothetical protein CICLE_v10003083mg [Citrus clementina])

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-08
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 1  MALMRGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYG 39
          MA+MRGEPLV KLA  AKYV+LPG+MAAAL+YSPP YG
Sbjct: 1  MAIMRGEPLVAKLAALAKYVILPGSMAAALIYSPPQYG 38

[Close]

BLAST of Lsi04G018330.1 vs. NCBI nr
Match: gi|658016006|ref|XP_008343347.1| (PREDICTED: uncharacterized protein LOC103406108 [Malus domestica])

HSP 1 Score: 64.7 bits (156), Expect = 8.1e-08
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1   MALMRGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDY 38
           MALMRGEPLV KLA  AKYVV PGAMAAA++YSPPDY
Sbjct: 555 MALMRGEPLVTKLAALAKYVVFPGAMAAAVIYSPPDY 591

The following BLAST results are available for this feature:

BLAST of Lsi04G018330.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G018330.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4N8_CUCSA	2.3e-09	84.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664390 PE=4 SV=1	[more]
V4T670_9ROSI	3.3e-08	78.95	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003083mg PE=4 SV=1	[more]
A0A067H074_CITSI	3.3e-08	78.95	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035474mg PE=4 SV=1	[more]
K4AYJ4_SOLLC	8.1e-07	68.29	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Lsi04G018330.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi04G018330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200374\|gb\|KGN55532.1\|	3.3e-09	84.62	hypothetical protein Csa_4G664390 [Cucumis sativus]	[more]
gi\|645224469\|ref\|XP_008219124.1\|	2.8e-08	89.19	PREDICTED: uncharacterized protein LOC103319370 [Prunus mume]	[more]
gi\|567885737\|ref\|XP_006435427.1\|	4.7e-08	78.95	hypothetical protein CICLE_v10003083mg [Citrus clementina]	[more]
gi\|658016006\|ref\|XP_008343347.1\|	8.1e-08	83.78	PREDICTED: uncharacterized protein LOC103406108 [Malus domestica]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi04G018330	Lsi04G018330	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G018330.1.CDS.1	Lsi04G018330.1.CDS.1	CDS
Lsi04G018330.1.CDS.2	Lsi04G018330.1.CDS.2	CDS
Lsi04G018330.1.CDS.3	Lsi04G018330.1.CDS.3	CDS
Lsi04G018330.1.CDS.4	Lsi04G018330.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G018330.1.three_prime_UTR.1	Lsi04G018330.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi04G018330.1	Lsi04G018330.1-protein	polypeptide