Lsi04G012120.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G012120.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Inositol-1,4,5-trisphosphate 5-phosphatase 4 isoform 2
Location	chr04 : 18681480 .. 18689152 (-)
Sequence length	2020

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCTTCTTTTCAATCTTCTTGTTCTTTGATTCTCAGAACTATTTTTCTTATTTCGATAGCCGGGTTTTTTCTTGTATCGCAATCAGAGGCCCTGAAATCGCCGTTTTCCCCTCGTGATGTGCTTCCATTACTACCAAGAAAGGTCTCGTGGCGGATTATGAACTATTTCAATAGCGCTGCTGATCTTCTTCCAGCTTTCGTCGGAGCTGTCTCATCCCCCGAAAAATCTGTTCAGTGGCAAGGGGCTTGCTTCTATAAGAACACTGCTTGGCTGGAGTTCCATAACAAGTCTGGCTCTCAATATGGGGGTGGTACTCTTCATATAAAGGTATGTATATGTATTAGACTTGACAATAAGTAAAGCTAATTCTCCATGGAACTGATGGAGTTAACTAACAAAACAGAAAGTAATGATGGTTCTAAGTAATTCTCAATGGACCAATTAAAAATCAGACTCAAACATCAATGAACAAAGATGAAACATGTCATTTTTGAAATTCTAAGGACTAAATAAAAATTGAATTCAAATATCATTGTTAGGGGTTATTGGCCGGTTCAACTTAAAATTGGTAGAGTGGGTTATTAGATGATATGATATTAAATTTGTCTTCACACATGAGCTTAAACTTTTGGGTCAATTGATGATTTAAGATGGACTACTATGTGTGCAGCTACAAATATAATATAATAGTGGAATTTACAACTATTTATAACGTACAATTATCTACAATAATATTATTTAAAATTTTTATTTGTTACAATGTTTACTGTTTGCTACCCATACTAAAATAGTATGCACTCCAAACACAGACTATTATAACCCAGACTAAAATAATTTGCACTTCAAACACAGAATAGCATCATCCCACATATTATATAATATCACTGATTATAATAACGAACTCAACATCTCAAACATCTCCTTAATTTTTACTTAGAAATTGAATAACTAAATGAAATTTAAGTTTAAATCTCAAATATAAAGTGTATTTTACCATAAAAAAAATAATAGTTTTCAAAAAACTGCAAACTAATATAAATCAAAATACATTTGTTAGTTGGTTATTATAGGTATGTTATAACAAAATATTACATAAACATAAGGGGAATTATTATAAAGGTAAAAAATATCAAATTATTTACAAATAAATTTTTTTTACTGTCTATTCGAGATAGACCCGATAGACTTCTATCACTAAGCGATAGAAGTCTATCGTTGTCTATCGTCCAGTGATAGAGACAGTGAAATTTTTTTATATTTGTAAATAGTTTGATATTATTTTCATTTTTGAAAATAACTCTAAAAATAATGATTCTTAAGGAAAATTACTATAAACATAAAAAAGTATCAAACTATTTACAAATATAGAAAAATTTCAGTGTCTATCAGTGATAGACTGCGATAGATGGTAAATTTTTTCTATATTTGTAAATAGTTTAACTTATTTTTCTATATTTGAAAACATTGATTAGTTCAATTTATAAAATTTAACTGGATGATTCTTATGATTATGGTTACAGTTAATGATCGCAATCTAAATTAATGAACATATATGAAAACAACTACAAAATTTATATGAGTCACCATAATTTAAGTTAGTAATTTATTTATAAATTTAAATTCTATGTTAAGTAAATATTTTTTTTTAGAAAAGGTATATTTGTAACTAGTTTAATTAAGAATATATATATATATATATATATATAACTACCCATTTAAATTTATTTTTAGTAAAAATCATCAATTAATTAACTATTTTAAAAGGAAGAATTAAAGGAAAAAAACTATAAACTATTTTTTCAAACATTTATTTCTTCATATTATAGCTGTTTTTTTTAAAGCGCAGTTGTAACCAATTATTTTAAAAGCTAGAATAATTCCAAATCAAGTCTATCATGATTTGAACAGCATAATTGTTTTTTCTCGATAATATTGAAGTAATGAGAACTTTTAGGTCATTTTAAATTGCAACATTTATCCAATTAAGTTTTTGATGTAATAATTTAATAAAATTAAAAGTTTATGGTTAAAATTGATAAGTGGAGAATCAAAATTGATATATTTTTTTCCTAGAAATTTTATTAGGATTTTAACAAATAATTAATAGAAATGGGTTTATATATATGCAGGTTAGCAATGCTCATAGTCCGACGTGTATGGATGTTTATATATTTGCAACTCCATACCGTTGGACGTGGGATAACTATTTCCTGTCCAGAGAGCATACTCTTGAGTTGCCACAATGGCAAGGAAAGGAGGAATTTGAATATGTAAGCTCTCGTTCGATAAATCATTTAGGTCTTGTTCGATAATTATAAAGGTATCTTATTGGATTATCCATTTTGCTTCTTTTAGTTTGAATTTATATTTGTTTTCTTTTAGTTTCTCTATTATAGTTTTTATCTAATTCCAAGTTTTAGTCCAATCCTAAAAATAAAAACATGGTTTTGAAAATTAATATTATTATTATTTTTTATTTTTAGTTTTCAAAATTTGACTTGATTTTTGAAAATTTGAGCGGAAGTGGATGTCAAAACGTAAAGATTTATGAGTGAAAGTAGAGTTTATAAAATTAATTTTTTAAAATCCAAAACAAAAAATTAAATGGTTATCAAATGAGTCTTTGTTTTTTATTTTCCATTTATGAAAATTAATTTGATAAATACCATTTCCTTTTCCTTTAGTTTTCTTGTTCTATTTACCTACTTTTTAAATCATTTTAAAAAACTTGCCATAGTTTGAAAACTAATTAAAAACAAAATGAAAAACAAAATGTCAAACTATTTAGAGAAAATAACAAATTAAAAAATACGGATAGACAATGAAAGACTTCTATCATCATCTATCAGTGATAGACTTCTATCATTTCTATCACTGATAGACCTTGATAAAATCTATCCGTGTCTATCATAAATATCTAAAACTTTTGTTATTTTGTGTAAATAGTTTTATTTATTTTTTTATTTTTTAAAATTCTCTAAATGGGAGAGAAAACCATATGTGAATTTTGGAAAACACACTACAACAAATTAGGCCTTTAGCGTCGGTCCAAAAAATTGGACACGGATCTTTAATGTCAGGCCAAGTAAAAAAAAAACGGATCTTTACTGTCAGTTTTAGACTGACATTAAAGATACATTAAAATAGATCTTTAATGTCGATTCTCGACTGACATTAAAGATCCTCCAAAATAATTTTCCAAATTTAATCTTCTTTTTGTGAAGATTCAAAATGCTCTCTCTCACACACTTCAACATATTTTTCTCTCAAATAGGGTTTGAGCTCGTGGTCGCCGCCGCTGTCCAACCATCACCGTTCAGCCATTGCCGTCGCGTGGAGCAGCAGTGGGTCGTCTTGCAGTCGCGTGGGCCGTCGATTCTCGTGGAAAATCCTTTCCCTCTTTTTTAATTTTTCACTTGCGACAACGGAATGTGTCCACACACATCTCTATCTTCTTTACCTGTATCTCAACACAGTCCCGTTTTCCCATCCTTACCCCCGTTTTGTACAGTAATTTCGAAACTACCACTGACTTTGCCTTCAGCTTCAACCCCTTTAACCCTTTTTTTTGATTGTGCCAACACAAGGCTACGTTTTGGTATCTAGAAGACACTGATCGTGCCATTTCACAAAACTTGCAGCCTACCTGTTTGTGAAAATGCCTCAATGGGCTGCAACATTCTGGTTGACACTGCTTGGATGTTTCTTCCTCTTTTTTCCCCCATATATCGCATTCTTCTTTGCTTCTTTGTTGCTTTGCCACTTTTTCTCTAGATTTTTGTTTGTTTCCCCCAAATATACCCATCAACTAATTGTTAAATCCATTGCCAATTGATGATTGAAAATTAGTTCTATGTTTGGTTTAAGTTGGTGGGTTTAAGATTGACTTTCTTGTTTAGCATAATTAGCATTGAAAAATTTGATTGTTTTTTTTTTTTTTTTTGTTTTGTGTAGTTTTCTCAGCAGTTTCTGGACTTGAGTTATCCATGTCCGAGGCTCACCATCAGTGTAAGCACCTTGACTTTAAACATCTTTATTAGTTGTCTTATGGAACATTTGACTCATACTATTCAAAATGACATCCTTTACTATAATTGCAAAGACCTCTCAGGCGGAAAATTTTGAGTGTTTAGACCTTTTGCTGCCTAAAATGTAACTTGAAGACTCTCTGGTGGTGATATGATTGAATTGTCTTACTAATGAGATATAATTTACTTTCCTTGTCTCTATCTCTCTCCACGTCTATATGAAAACTAAATTAGTAATGCTTTCCTCTTGCAAGGTAGAGATTGTGATAAGAGTTTCAAGAAGTATAGTGCTAATAATATTAAGGATATCATCCCTTTCACTCAATCTATCTTCTTCTTTGTTTGGTATTGTGGAAAAGTTCCTTGCATCACCCTCCTATCTGGATCTCATTGTCGCTCAACCTTAAAGGTTCTTTTGGTTAAGATTTAGAGGCTAATGTTACTCTAAATTCCTTTCGGACTAAATTAGAGTGTTTTTGAATTGTCCCTAACAGTTGTAAACTCTTGTTTGTGGATTCAGACTAGTTTTGGACTCTTCAAACTCGTTCCAGTAAAGACCCTAGCCTTTTTGGTAAGATATTTAAGTGGTAATGTTTTGTTTAGACTTTTCAGTTTTATTTTAAGTGTTGTAATTTAATTTATAACCTTTGGAGCTCTATTTGTAGATAGGTAAGTTTTAATTTAGAGCTTTATTTGATATATTTTTAATATACTCAATTTTATATACTTAAGTAAGTATATCTTCTTTGTAGATTGTTTAGTAAGTAACAATACTTTGAGTCCCTTCCTAACTCTTTTTAAGGTGTTTTAGATTAGTCTCTAATACTTGTAAGCTCTTGATTGTAGATTCAGAGTATTTTTGGACCCATTCGAACACTTTTTCAGCAAGAATTTATGTTCTTTTAGTGCGTTTTAGGTAGTAAAACTTGATTAAGGTCTTTTTGACTCATTTAAAGTGTTGTAATTTAGTTTATAACTCTATATGGACTCTTTGTTTGTAGTTTGAGACTAACTCAGCGTGTTCCAATTAAGTTTAAAGTCTATTTTGGGTAAGAACATTGATTCTGAATGTTTTTTGAGACATTGAATAATGTTTAAACTAAGTTTTAGTCTTTGAACCTTAGTTTTATCATTTTAGAAGCCTTTCAAATAATTTAGAAGCTCTTTTGACACGCGTAGGTGAGTAGAATTCTACTTCATGGGTCTATTTGTAGAATTTTGTGTCTTTCCTTGTTTTATTGCAGTATGTGATGTACTTTATCAAAATACAACACTATTTTGATGAGTTTTCAATATACTGAATTGTGTAGTATGATGTTTGACTGGGAATGACTAGCATGAATGAAATGTTATTATGTGTTTGTGGTTTCTACTTCAAGGTGGAATGATAGTTTAGGATGTTACCTTATGGCAGTTTAACGATGTTCCCTTATGATAGCTTAGTGATGTTCCCTTATCACTAAAAATTAGTTTAATTAATTACTGTGAATTAAAGATTAACGTAGTGGATTATGAATATGATTAGTGAATTTTTTTTTTTGGTTTGAAATATGAGTCTGTTATCTGAAGTTGAATGGCCAAGCTATAATGATAGTCAAGAAGGAAGTTTTGGATATTTTGGGAGATCAACTATTGGAAGCACAAATTACAAATGTAAATATAAATATTGTGTATTTCAAGTTGATGGTTTATAGAAGCTAAAATCCTCCTAAAAAAAGGTACATAAGACTTTTTAACTAAGCTACAGAGGAAAGGAAAAATTACAAATGTAGTTATTACTGGTAATTTTACTTGTATGCCTAGAAGATATAGTATTGAAGATTTAGTCTAGATTTCTTTTACCGTATTTGTGGGTGTTGTACATCTACTTCAACTATACTAAAAAAGAGTACTTTGTATTCCTTGCAACAACCTCATAGATAAGAAGCTTATGGATTGAAGACTAAGGAACCTAAAGAAACAATGGAGGGTAAACATGTGTACGTAAACAAATAATAGTGTAATTATTAACAAAAGAAATGATTTTGTAGTAGAAGTTGAGAGGGCACTTGTCATATTTTTTTATGCATATTATACACTTGTAGAATAAGTAACATACATTGTTGTTCTTTTTGTGTTATAAAATGAGATTCATACTTTGCTCTTAAAATCAGTTGAAAATGACTTCATGGAAATTTAATATCTATACTTCATCCACCTTAAGAGAAAGGTAGCATTAAATATGGATGAGAGTGGAAAGGACTTTACCCAAATAGGATTTACCATTTCTTTCATTTTTCTTGTTGCAGGATGCTTTCAAAATGTAGTCTCTCATCATAAAAACTCTTCAATTTATAGGTACTCATCTTAATTCTATGAATTTCTAATTAGAATTGTAACATAGAGAATTTTTCTGCAGGTTATAACTCAAATTTTAATCTCCAAGGTAACTTTCATTCCCTTAAACACGATTAGTGCCACAAAGTTTCTAGTTAACTCATTTTAGGTCCTACTCGTATGAGCTTACTATATTGTGAAGATGGTTAGTTGGGGTCTTTGTAAATGTTGGTTCTTAACTATTTCTTTTCATTTGAACCCAAAGACATGGTTAACCATGAATATTATTTATATTTTTATCTTTTTGTTTTTCTTGTTCCTTTTCTTGCACCTTGGCTTGAACATAGTAATTGATTTGATTATTAGTGTCAAATATTTAGTTTCTTGAAATGAAATTATAAGCCAAGGAGAGAAATTGAGTGGGATGTTAATGAAGTCCCTCACATATATTCTCTCTTTGGTATATATATTGACTTCTTTCCTTATGTTGTTAAGTAGAAGCTATTAGGAAGGGAATAGTAACGGTGCAACATCAACTAGCATTCATCATTACGATCTTGCTTGTAGGTAACTTTTGTTATAGTCGAGTTTCAAAAAGTATAGTGCTAATAATATTAAGGATATATCATCCCTTTTAGTCAATCTATCTTCTTCTTTGTTTGGTATTGTGGAAAAGTTCCTTGCATCACCCTCCTATCTAGATCTCATTGTCGCTCAACCTTAAAGGTTCTTTTGGTTAAGATTTAGAGGCTAATGTTACTCTAAATTTCTTTCGGACTAAATTAGAGTATTTTTGAATTGTCTCTAACACTTGTAAACTTTTGTTTGTGGATTCAGACTAGTTTTGGACTCTTCAAACTCGTTCCAGTAAAGACCTTAGCCTTTTTGGTAAGATATTTAGGTGGTAATGTTTTGTTTAGACTTTTCAGTTTTATTTTAAGTGTTGTAATTTAGTTTATAACCTCTGGAGCTCTATTTGTAGATAGGTAAGTTTTAATTTAGAGCTTTATTTGATATATTCTTAATATTCTCAATTTTATTAAGTAAGCATATCTTTTTTGCAGATTGTTTTGTGATAGGACCCTCCAGACAACCAGCTTTCTTGATCTTTAGACTTTAGAACTCTATGTAATATTGATCGTTGTAACTTGTTGATAGGTTTACTTAGTTATTATATATGCTCTGTATTTTATAATTAAGGATCATAACTTGTCTTGTATTTAAAGTTTTGTTTATCTTTGTAAATTGAATGTAGTTTGTAGAGAGACGGATAATCATATTACTTCTATTGGAGTGAATTAGTTAATTGTTGTGCTTGTT

mRNA sequence

ATGGCTTCTTCTTCTTTTCAATCTTCTTGTTCTTTGATTCTCAGAACTATTTTTCTTATTTCGATAGCCGGGTTTTTTCTTGTATCGCAATCAGAGGCCCTGAAATCGCCGTTTTCCCCTCGTGATGTGCTTCCATTACTACCAAGAAAGGTCTCGTGGCGGATTATGAACTATTTCAATAGCGCTGCTGATCTTCTTCCAGCTTTCGTCGGAGCTGTCTCATCCCCCGAAAAATCTGTTCAGTGGCAAGGGGCTTGCTTCTATAAGAACACTGCTTGGCTGGAGTTCCATAACAAGTCTGGCTCTCAATATGGGGGTGGTACTCTTCATATAAAGGTTAGCAATGCTCATAGTCCGACGTGTATGGATGTTTATATATTTGCAACTCCATACCGTTGGACGTGGGATAACTATTTCCTGTCCAGAGAGCATACTCTTGAGTTGCCACAATGGCAAGGAAAGGAGGAATTTGAATATTTTTCTCAGCAGTTTCTGGACTTGAGTTATCCATGTCCGAGGCTCACCATCAGTGTAAGCACCTTGACTTTAAACATCTTTATTAGTTGTCTTATGGAACATTTGACTCATACTATTCAAAATGACATCCTTTACTATAATTGCAAAGACCTCTCAGGCGGAAAATTTTGAGTGTTTAGACCTTTTGCTGCCTAAAATGTAACTTGAAGACTCTCTGGTGGTGATATGATTGAATTGTCTTACTAATGAGATATAATTTACTTTCCTTGTCTCTATCTCTCTCCACGTCTATATGAAAACTAAATTAGTAATGCTTTCCTCTTGCAAGGTAGAGATTGTGATAAGAGTTTCAAGAAGTATAGTGCTAATAATATTAAGGATATCATCCCTTTCACTCAATCTATCTTCTTCTTTGTTTGGTATTGTGGAAAAGTTCCTTGCATCACCCTCCTATCTGGATCTCATTGTCGCTCAACCTTAAAGGTTCTTTTGGTTAAGATTTAGAGGCTAATGTTACTCTAAATTCCTTTCGGACTAAATTAGAGTGTTTTTGAATTGTCCCTAACAGTTGTAAACTCTTGTTTGTGGATTCAGACTAGTTTTGGACTCTTCAAACTCGTTCCAGTAAAGACCCTAGCCTTTTTGGATGCTTTCAAAATGTAGTCTCTCATCATAAAAACTCTTCAATTTATAGGTACTCATCTTAATTCTATGAATTTCTAATTAGAATTGTAACATAGAGAATTTTTCTGCAGGTTATAACTCAAATTTTAATCTCCAAGGTAACTTTCATTCCCTTAAACACGATTAGTGCCACAAAGTTTCTAGTTAACTCATTTTAGGTCCTACTCGTATGAGCTTACTATATTGTGAAGATGGTTAGTTGGGGTCTTTGTAAATGTTGGTTCTTAACTATTTCTTTTCATTTGAACCCAAAGACATGGTTAACCATGAATATTATTTATATTTTTATCTTTTTGTTTTTCTTGTTCCTTTTCTTGCACCTTGGCTTGAACATAGTAATTGATTTGATTATTAGTGTCAAATATTTAGTTTCTTGAAATGAAATTATAAGCCAAGGAGAGAAATTGAGTGGGATGTTAATGAAGTCCCTCACATATATTCTCTCTTTGGTATATATATTGACTTCTTTCCTTATGTTGTTAAGTAGAAGCTATTAGGAAGGGAATAGTAACGGTGCAACATCAACTAGCATTCATCATTACGATCTTGCTTACTAGTTTTGGACTCTTCAAACTCGTTCCAGTAAAGACCTTAGCCTTTTTGATTGTTTTGTGATAGGACCCTCCAGACAACCAGCTTTCTTGATCTTTAGACTTTAGAACTCTATGTAATATTGATCGTTGTAACTTGTTGATAGGTTTACTTAGTTATTATATATGCTCTGTATTTTATAATTAAGGATCATAACTTGTCTTGTATTTAAAGTTTTGTTTATCTTTGTAAATTGAATGTAGTTTGTAGAGAGACGGATAATCATATTACTTCTATTGGAGTGAATTAGTTAATTGTTGTGCTTGTT

Coding sequence (CDS)

ATGGCTTCTTCTTCTTTTCAATCTTCTTGTTCTTTGATTCTCAGAACTATTTTTCTTATTTCGATAGCCGGGTTTTTTCTTGTATCGCAATCAGAGGCCCTGAAATCGCCGTTTTCCCCTCGTGATGTGCTTCCATTACTACCAAGAAAGGTCTCGTGGCGGATTATGAACTATTTCAATAGCGCTGCTGATCTTCTTCCAGCTTTCGTCGGAGCTGTCTCATCCCCCGAAAAATCTGTTCAGTGGCAAGGGGCTTGCTTCTATAAGAACACTGCTTGGCTGGAGTTCCATAACAAGTCTGGCTCTCAATATGGGGGTGGTACTCTTCATATAAAGGTTAGCAATGCTCATAGTCCGACGTGTATGGATGTTTATATATTTGCAACTCCATACCGTTGGACGTGGGATAACTATTTCCTGTCCAGAGAGCATACTCTTGAGTTGCCACAATGGCAAGGAAAGGAGGAATTTGAATATTTTTCTCAGCAGTTTCTGGACTTGAGTTATCCATGTCCGAGGCTCACCATCAGTGTAAGCACCTTGACTTTAAACATCTTTATTAGTTGTCTTATGGAACATTTGACTCATACTATTCAAAATGACATCCTTTACTATAATTGCAAAGACCTCTCAGGCGGAAAATTTTGA

Protein sequence

MASSSFQSSCSLILRTIFLISIAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFNSAADLLPAFVGAVSSPEKSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPTCMDVYIFATPYRWTWDNYFLSREHTLELPQWQGKEEFEYFSQQFLDLSYPCPRLTISVSTLTLNIFISCLMEHLTHTIQNDILYYNCKDLSGGKF

Homology

[Close]

BLAST of Lsi04G012120.1 vs. TrEMBL
Match: A0A0A0LBE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G416650 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.5e-70
Identity = 121/144 (84.03%), Postives = 138/144 (95.83%), Query Frame = 1


Query: 16  TIFLISIAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFNSAADLLPAFVGAVSS 75
           ++FLISI GF LVSQSEALK+PFSPRD+LPLLP KVS+RI+NYFNSAADLLP+FVG+VSS
Sbjct: 5   SLFLISIVGFLLVSQSEALKTPFSPRDMLPLLPTKVSYRILNYFNSAADLLPSFVGSVSS 64

Query: 76  PEKSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPTCMDVYIFATPYRWTW 135
           P+KSVQWQGACFY+NTAWLEFHNKSGSQYGGGTLHIKVS+AHSPTC+D+YIFATPYRWTW
Sbjct: 65  PDKSVQWQGACFYQNTAWLEFHNKSGSQYGGGTLHIKVSDAHSPTCIDLYIFATPYRWTW 124

Query: 136 DNYFLSREHTLELPQWQGKEEFEY 160
           D YF S+EHT++ PQWQGKEE+EY
Sbjct: 125 DFYFFSKEHTMDFPQWQGKEEYEY 148

[Close]

BLAST of Lsi04G012120.1 vs. TrEMBL
Match: A0A0A0LD40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G416640 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-63
Identity = 115/157 (73.25%), Postives = 133/157 (84.71%), Query Frame = 1


Query: 3   SSSFQSSCSLILRTIFLISIAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFNSA 62
           SSS Q   S I RTI L+S+    L SQ  ALKSPFSP D+LPLLPR+VSW ++NY N+A
Sbjct: 7   SSSSQFFSSFIPRTILLVSVVALLLSSQPHALKSPFSPLDLLPLLPRQVSWPVLNYLNNA 66

Query: 63  ADLLPAFVGAVSSPEKSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPTCM 122
           ADLLP FVGAV+SP+ S+QWQGACFYKNTAW+EFHNKSGS++GGGTLHIK S+AHS TCM
Sbjct: 67  ADLLPTFVGAVTSPDNSIQWQGACFYKNTAWIEFHNKSGSEFGGGTLHIKASDAHSWTCM 126

Query: 123 DVYIFATPYRWTWDNYFLSREHTLELPQWQGKEEFEY 160
           D+YIFATPYR TWD YFLSREHTLE+ +W+GKEEFEY
Sbjct: 127 DLYIFATPYRITWDYYFLSREHTLEIEEWEGKEEFEY 163

[Close]

BLAST of Lsi04G012120.1 vs. TrEMBL
Match: A0A068UC57_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021040001 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.7e-54
Identity = 99/138 (71.74%), Postives = 115/138 (83.33%), Query Frame = 1


Query: 22  IAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFNSAADLLPAFVGAVSSPEKSVQ 81
           I  FF  SQ  ALK PF P DVLP+LPR+VSW IMNY NSA DLLP+FVGA SS   S++
Sbjct: 17  IYAFFFASQLHALKVPFHPLDVLPVLPRRVSWPIMNYLNSAVDLLPSFVGAASSTNNSLE 76

Query: 82  WQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPTCMDVYIFATPYRWTWDNYFLS 141
           W+GACFY+NTAWLEF+NKSGS++GGGTLHIKVS AHS TCMD+YIFATPYR TWD YFLS
Sbjct: 77  WKGACFYENTAWLEFNNKSGSEFGGGTLHIKVSKAHSWTCMDLYIFATPYRVTWDYYFLS 136

Query: 142 REHTLELPQWQGKEEFEY 160
           REHTLE  +W+ ++E+EY
Sbjct: 137 REHTLEFEEWESEQEYEY 154

[Close]

BLAST of Lsi04G012120.1 vs. TrEMBL
Match: A0A0B0MI20_GOSAR (Tryptophan synthase alpha chain OS=Gossypium arboreum GN=F383_22343 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.8e-54
Identity = 105/167 (62.87%), Postives = 128/167 (76.65%), Query Frame = 1


Query: 1   MASSSFQSSCSLILRTIFLISIAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFN 60
           MASSS  SS S  +R   L+    FF  S  +A+KSP  PRDVLPLLPR+VSW I+N  N
Sbjct: 1   MASSS-SSSSSFFVRCFPLLFFFFFFFFSHVQAVKSPIHPRDVLPLLPRQVSWPILNSLN 60

Query: 61  SAADLLPAFVGAVSSPEKSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPT 120
           SA DLLPAFVG+VSS    V W+GACFY+NTAW+EFHNKSGS++GGGTLHIKVS AHS T
Sbjct: 61  SAIDLLPAFVGSVSSQNHIVSWKGACFYENTAWMEFHNKSGSEFGGGTLHIKVSKAHSWT 120

Query: 121 CMDVYIFATPYRWTWDNYFLSREHTLELPQWQGKEEFEYFSQQFLDL 168
           C+D+Y+FATPYR TWD YFLSREHTLE+ +W+ + E+EY   + + +
Sbjct: 121 CLDLYLFATPYRVTWDYYFLSREHTLEIDKWEDRAEYEYVKNKGISI 166

[Close]

BLAST of Lsi04G012120.1 vs. TrEMBL
Match: B9I0D5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14080g PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.2e-53
Identity = 99/154 (64.29%), Postives = 121/154 (78.57%), Query Frame = 1


Query: 11  SLILRTIFLISIAGFFLVSQSE-ALKSPFSPRDVLPLLPRKVSWRIMNYFNSAADLLPAF 70
           S  L+TI  IS+  FFL  QS  A+K PF P+D+LPLLPR+VSW I+NY N AADLLP F
Sbjct: 4   SFSLKTILTISLFLFFLTPQSSLAIKVPFHPQDLLPLLPRQVSWPILNYLNGAADLLPTF 63

Query: 71  VGAVSSPEKSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPTCMDVYIFAT 130
           VGA S+   + +W+GACFY+N AW+EFHNK+GS++GGGTLH+KVS AHS TCMD+Y+FAT
Sbjct: 64  VGAASALNDTGEWKGACFYENRAWMEFHNKTGSEFGGGTLHLKVSKAHSWTCMDIYVFAT 123

Query: 131 PYRWTWDNYFLSREHTLELPQWQGKEEFEYFSQQ 164
           PYR TWD YFLSREHTLE  +W  K E+EY  +Q
Sbjct: 124 PYRVTWDYYFLSREHTLEFKEWDSKAEYEYVKRQ 157

[Close]

BLAST of Lsi04G012120.1 vs. TAIR10
Match: AT5G54870.1 (AT5G54870.1 unknown protein)

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-54
Identity = 99/159 (62.26%), Postives = 121/159 (76.10%), Query Frame = 1


Query: 1   MASSSFQSSCSLILRTIFLISIAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFN 60
           MASSS  SS S  L +I  I +    +VS +E++KSPF PRD+LP LPR+VSW I+N   
Sbjct: 1   MASSSSSSSSSS-LSSILSIVVVLILIVSTAESVKSPFHPRDLLPHLPRQVSWPILNSLY 60

Query: 61  SAADLLPAFVGAVSSPEKSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPT 120
            AADLLP F+G  SS   SV W+GACF++NTAWLEFHNKSGS++GGGTLHIK   AHS T
Sbjct: 61  GAADLLPTFIGTASSGNDSVDWKGACFFENTAWLEFHNKSGSEFGGGTLHIKADKAHSWT 120

Query: 121 CMDVYIFATPYRWTWDNYFLSREHTLELPQWQGKEEFEY 160
           CMD+Y+FATPYR TW  YF+SR+HT+E P+W GK E+EY
Sbjct: 121 CMDLYVFATPYRVTWTWYFISRQHTVEFPEWDGKAEYEY 158

[Close]

BLAST of Lsi04G012120.1 vs. TAIR10
Match: AT4G27020.1 (AT4G27020.1 unknown protein)

HSP 1 Score: 191.0 bits (484), Expect = 7.4e-49
Identity = 90/163 (55.21%), Postives = 117/163 (71.78%), Query Frame = 1


Query: 1   MASSSFQSSCSLILRTIFLISIAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFN 60
           MA+SS  S C     T+ ++      L++ S   K PF PRD+LPL PR+VSW ++N  N
Sbjct: 1   MAASS--SPCIFFATTLLVL------LLTFSSG-KLPFHPRDLLPLFPRQVSWPVVNSLN 60

Query: 61  SAADLLPAFVGAVSSPEKSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPT 120
           +A DLLP F+G+ S    +V+W+GACFY+N AWLE +NKSGS++GGGTLHIKV  AHS T
Sbjct: 61  TAVDLLPTFIGSASVRNDAVEWKGACFYENKAWLELNNKSGSEFGGGTLHIKVDKAHSWT 120

Query: 121 CMDVYIFATPYRWTWDNYFLSREHTLELPQWQGKEEFEYFSQQ 164
           CMD+Y+F TPYR TWD YF SREHT+E  +W+GK E+EY  Q+
Sbjct: 121 CMDIYVFVTPYRVTWDWYFASREHTMEFKEWEGKAEYEYVKQK 154

[Close]

BLAST of Lsi04G012120.1 vs. TAIR10
Match: AT1G70160.1 (AT1G70160.1 unknown protein)

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-39
Identity = 73/147 (49.66%), Postives = 99/147 (67.35%), Query Frame = 1


Query: 18  FLISIAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFNSAADLLPAFVGAVSSPE 77
           FL+ +   F V   ++LK PFS  DVLP+LPR+VSW ++N F++A DLLP F+G+V+   
Sbjct: 9   FLLCLGLGFCVDLGQSLKVPFSVNDVLPMLPRQVSWPVLNSFHNAVDLLPVFIGSVTPNN 68

Query: 78  KSVQWQGACFYKNTAWLEF--HNKSGSQYGGGTLHIKVSNAHSPTCMDVYIFATPYRWTW 137
            S++W+GACF  N A L+    ++     GGG LH+K S AHS TCMD+Y+FATPYR TW
Sbjct: 69  VSIEWKGACFNGNEARLDITGSDRDVPGLGGGVLHLKTSKAHSLTCMDLYVFATPYRITW 128

Query: 138 DNYFLSREHTLELPQWQGKEEFEYFSQ 163
           D YF +R+HTL    W+ K E EY  +
Sbjct: 129 DYYFSARDHTLNFDSWEEKAELEYVKE 155

[Close]

BLAST of Lsi04G012120.1 vs. NCBI nr
Match: gi|659109108|ref|XP_008454552.1| (PREDICTED: uncharacterized protein LOC103494942 [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 4.5e-72
Identity = 130/159 (81.76%), Postives = 144/159 (90.57%), Query Frame = 1


Query: 1   MASSSFQSSCSLILRTIFLISIAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFN 60
           M  SS  +  ++   ++FLISI GF LVSQSEALK+PFSPRD+LPLLPRKVS RI+NYFN
Sbjct: 1   MHISSISNIPAMASSSLFLISIVGFLLVSQSEALKTPFSPRDMLPLLPRKVSLRILNYFN 60

Query: 61  SAADLLPAFVGAVSSPEKSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPT 120
           SAADLLP+FVG VSSP++SVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPT
Sbjct: 61  SAADLLPSFVGDVSSPDRSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPT 120

Query: 121 CMDVYIFATPYRWTWDNYFLSREHTLELPQWQGKEEFEY 160
           CMDVYIFATPYRWTWD+YF SREHTL+ PQWQGKEE+EY
Sbjct: 121 CMDVYIFATPYRWTWDHYFFSREHTLDFPQWQGKEEYEY 159

[Close]

BLAST of Lsi04G012120.1 vs. NCBI nr
Match: gi|700202839|gb|KGN57972.1| (hypothetical protein Csa_3G416650 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-69
Identity = 121/144 (84.03%), Postives = 138/144 (95.83%), Query Frame = 1


Query: 16  TIFLISIAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFNSAADLLPAFVGAVSS 75
           ++FLISI GF LVSQSEALK+PFSPRD+LPLLP KVS+RI+NYFNSAADLLP+FVG+VSS
Sbjct: 5   SLFLISIVGFLLVSQSEALKTPFSPRDMLPLLPTKVSYRILNYFNSAADLLPSFVGSVSS 64

Query: 76  PEKSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPTCMDVYIFATPYRWTW 135
           P+KSVQWQGACFY+NTAWLEFHNKSGSQYGGGTLHIKVS+AHSPTC+D+YIFATPYRWTW
Sbjct: 65  PDKSVQWQGACFYQNTAWLEFHNKSGSQYGGGTLHIKVSDAHSPTCIDLYIFATPYRWTW 124

Query: 136 DNYFLSREHTLELPQWQGKEEFEY 160
           D YF S+EHT++ PQWQGKEE+EY
Sbjct: 125 DFYFFSKEHTMDFPQWQGKEEYEY 148

[Close]

BLAST of Lsi04G012120.1 vs. NCBI nr
Match: gi|778681178|ref|XP_004152029.2| (PREDICTED: uncharacterized protein LOC101212346 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-69
Identity = 124/159 (77.99%), Postives = 144/159 (90.57%), Query Frame = 1


Query: 1   MASSSFQSSCSLILRTIFLISIAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFN 60
           M  SS  +  ++   ++FLISI GF LVSQSEALK+PFSPRD+LPLLP KVS+RI+NYFN
Sbjct: 1   MHISSISNIPAMASSSLFLISIVGFLLVSQSEALKTPFSPRDMLPLLPTKVSYRILNYFN 60

Query: 61  SAADLLPAFVGAVSSPEKSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPT 120
           SAADLLP+FVG+VSSP+KSVQWQGACFY+NTAWLEFHNKSGSQYGGGTLHIKVS+AHSPT
Sbjct: 61  SAADLLPSFVGSVSSPDKSVQWQGACFYQNTAWLEFHNKSGSQYGGGTLHIKVSDAHSPT 120

Query: 121 CMDVYIFATPYRWTWDNYFLSREHTLELPQWQGKEEFEY 160
           C+D+YIFATPYRWTWD YF S+EHT++ PQWQGKEE+EY
Sbjct: 121 CIDLYIFATPYRWTWDFYFFSKEHTMDFPQWQGKEEYEY 159

[Close]

BLAST of Lsi04G012120.1 vs. NCBI nr
Match: gi|659109106|ref|XP_008454551.1| (PREDICTED: uncharacterized protein LOC103494941 [Cucumis melo])

HSP 1 Score: 256.5 bits (654), Expect = 4.1e-65
Identity = 118/158 (74.68%), Postives = 137/158 (86.71%), Query Frame = 1


Query: 2   ASSSFQSSCSLILRTIFLISIAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFNS 61
           +SSS QS  S I RTI L+S+ GF L SQ  ALKSPFSP D+LPLLPR+VSW ++NY N+
Sbjct: 7   SSSSSQSFSSFITRTILLVSLVGFLLPSQLHALKSPFSPIDLLPLLPRQVSWPVLNYLNN 66

Query: 62  AADLLPAFVGAVSSPEKSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPTC 121
           AADLLP FVGAV+SP+ S+QWQGACFYKNTAW+EFHNKSGS++GGGTLHIK S+AHS TC
Sbjct: 67  AADLLPTFVGAVTSPDNSIQWQGACFYKNTAWIEFHNKSGSEFGGGTLHIKASDAHSWTC 126

Query: 122 MDVYIFATPYRWTWDNYFLSREHTLELPQWQGKEEFEY 160
           MD+YIFATPYR TWD YFLSREHTLE+ +W+GKEEFEY
Sbjct: 127 MDLYIFATPYRITWDYYFLSREHTLEIAEWEGKEEFEY 164

[Close]

BLAST of Lsi04G012120.1 vs. NCBI nr
Match: gi|449468498|ref|XP_004151958.1| (PREDICTED: uncharacterized protein LOC101214437 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 3.8e-63
Identity = 115/157 (73.25%), Postives = 133/157 (84.71%), Query Frame = 1


Query: 3   SSSFQSSCSLILRTIFLISIAGFFLVSQSEALKSPFSPRDVLPLLPRKVSWRIMNYFNSA 62
           SSS Q   S I RTI L+S+    L SQ  ALKSPFSP D+LPLLPR+VSW ++NY N+A
Sbjct: 7   SSSSQFFSSFIPRTILLVSVVALLLSSQPHALKSPFSPLDLLPLLPRQVSWPVLNYLNNA 66

Query: 63  ADLLPAFVGAVSSPEKSVQWQGACFYKNTAWLEFHNKSGSQYGGGTLHIKVSNAHSPTCM 122
           ADLLP FVGAV+SP+ S+QWQGACFYKNTAW+EFHNKSGS++GGGTLHIK S+AHS TCM
Sbjct: 67  ADLLPTFVGAVTSPDNSIQWQGACFYKNTAWIEFHNKSGSEFGGGTLHIKASDAHSWTCM 126

Query: 123 DVYIFATPYRWTWDNYFLSREHTLELPQWQGKEEFEY 160
           D+YIFATPYR TWD YFLSREHTLE+ +W+GKEEFEY
Sbjct: 127 DLYIFATPYRITWDYYFLSREHTLEIEEWEGKEEFEY 163

The following BLAST results are available for this feature:

BLAST of Lsi04G012120.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G012120.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBE7_CUCSA	8.5e-70	84.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G416650 PE=4 SV=1	[more]
A0A0A0LD40_CUCSA	2.6e-63	73.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G416640 PE=4 SV=1	[more]
A0A068UC57_COFCA	1.7e-54	71.74	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021040001 PE=4 SV=1	[more]
A0A0B0MI20_GOSAR	3.8e-54	62.87	Tryptophan synthase alpha chain OS=Gossypium arboreum GN=F383_22343 PE=4 SV=1	[more]
B9I0D5_POPTR	3.2e-53	64.29	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14080g PE=4 SV=1	[more]

BLAST of Lsi04G012120.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54870.1	1.2e-54	62.26	unknown protein	[more]
AT4G27020.1	7.4e-49	55.21	unknown protein	[more]
AT1G70160.1	4.1e-39	49.66	unknown protein	[more]

BLAST of Lsi04G012120.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109108\|ref\|XP_008454552.1\|	4.5e-72	81.76	PREDICTED: uncharacterized protein LOC103494942 [Cucumis melo]	[more]
gi\|700202839\|gb\|KGN57972.1\|	1.2e-69	84.03	hypothetical protein Csa_3G416650 [Cucumis sativus]	[more]
gi\|778681178\|ref\|XP_004152029.2\|	1.2e-69	77.99	PREDICTED: uncharacterized protein LOC101212346 [Cucumis sativus]	[more]
gi\|659109106\|ref\|XP_008454551.1\|	4.1e-65	74.68	PREDICTED: uncharacterized protein LOC103494941 [Cucumis melo]	[more]
gi\|449468498\|ref\|XP_004151958.1\|	3.8e-63	73.25	PREDICTED: uncharacterized protein LOC101214437 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi04G012120	Lsi04G012120	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi04G012120.1	Lsi04G012120.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G012120.1.three_prime_UTR.4	Lsi04G012120.1.three_prime_UTR.4	three_prime_UTR
Lsi04G012120.1.three_prime_UTR.3	Lsi04G012120.1.three_prime_UTR.3	three_prime_UTR
Lsi04G012120.1.three_prime_UTR.2	Lsi04G012120.1.three_prime_UTR.2	three_prime_UTR
Lsi04G012120.1.three_prime_UTR.1	Lsi04G012120.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G012120.1.CDS.3	Lsi04G012120.1.CDS.3	CDS
Lsi04G012120.1.CDS.2	Lsi04G012120.1.CDS.2	CDS
Lsi04G012120.1.CDS.1	Lsi04G012120.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31354	FAMILY NOT NAMED	coord: 1..159 score: 1.2
None	No IPR available	PANTHER	PTHR31354:SF0	SUBFAMILY NOT NAMED	coord: 1..159 score: 1.2