Lsi04G003520.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G003520.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr04 : 3509300 .. 3509536 (+)
Sequence length237
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGGGAGCCGGAGATCGGAGGGTCGATGGGGGCGAAGATCGTCGGGGCAGTGGTGGGGCTCGCCATTTTCATTGGGTGTTTGGCCACCATGTTATTGGCGACCTTTAAAACCACCGCCAATGATAAAACGATGAAGGCTCCGGGAAAACAGGGGGAGCGAATTTCCAGAGCTGAGTTTCAGAAAAATCCCTCTAAGTACTTCGACGGCCTGCGCAAGAAACGATCCAACTAA

mRNA sequence

ATGAGCGGGGAGCCGGAGATCGGAGGGTCGATGGGGGCGAAGATCGTCGGGGCAGTGGTGGGGCTCGCCATTTTCATTGGGTGTTTGGCCACCATGTTATTGGCGACCTTTAAAACCACCGCCAATGATAAAACGATGAAGGCTCCGGGAAAACAGGGGGAGCGAATTTCCAGAGCTGAGTTTCAGAAAAATCCCTCTAAGTACTTCGACGGCCTGCGCAAGAAACGATCCAACTAA

Coding sequence (CDS)

ATGAGCGGGGAGCCGGAGATCGGAGGGTCGATGGGGGCGAAGATCGTCGGGGCAGTGGTGGGGCTCGCCATTTTCATTGGGTGTTTGGCCACCATGTTATTGGCGACCTTTAAAACCACCGCCAATGATAAAACGATGAAGGCTCCGGGAAAACAGGGGGAGCGAATTTCCAGAGCTGAGTTTCAGAAAAATCCCTCTAAGTACTTCGACGGCCTGCGCAAGAAACGATCCAACTAA

Protein sequence

MSGEPEIGGSMGAKIVGAVVGLAIFIGCLATMLLATFKTTANDKTMKAPGKQGERISRAEFQKNPSKYFDGLRKKRSN
Homology
[Close]
BLAST of Lsi04G003520.1 vs. TrEMBL
Match: A0A0A0KW91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606810 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.3e-16
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 1  MSGEPEIGGSMGAKIVGAVVGLAIFIGCLATMLLATFKTTANDKTMKAPGKQGERISRAE 60
          MSGEP+ GGS  AKIVGAVVG A FIGC+A+M  A  +T  + +TMKAPGK GE + R E
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMFSADSETAGDRRTMKAPGKHGEEMYRDE 60

Query: 61 FQKNPSKYFDGLRKK 76
          F+K+PSKYF  LRKK
Sbjct: 61 FEKDPSKYFRDLRKK 75

[Close]
BLAST of Lsi04G003520.1 vs. NCBI nr
Match: gi|700196814|gb|KGN51991.1| (hypothetical protein Csa_5G606810 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 4.8e-16
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 1  MSGEPEIGGSMGAKIVGAVVGLAIFIGCLATMLLATFKTTANDKTMKAPGKQGERISRAE 60
          MSGEP+ GGS  AKIVGAVVG A FIGC+A+M  A  +T  + +TMKAPGK GE + R E
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMFSADSETAGDRRTMKAPGKHGEEMYRDE 60

Query: 61 FQKNPSKYFDGLRKK 76
          F+K+PSKYF  LRKK
Sbjct: 61 FEKDPSKYFRDLRKK 75

The following BLAST results are available for this feature:
BLAST of Lsi04G003520.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G003520.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW91_CUCSA3.3e-1664.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606810 PE=4 SV=1[more]
BLAST of Lsi04G003520.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi04G003520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196814|gb|KGN51991.1|4.8e-1664.00hypothetical protein Csa_5G606810 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi04G003520Lsi04G003520gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi04G003520.1.CDS.1Lsi04G003520.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi04G003520.1Lsi04G003520.1-proteinpolypeptide