Lsi04G000440.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G000440.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr04 : 597136 .. 605881 (-)
Sequence length	180

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAATCAATTTATTTAGAGGACATTGAGCAATTAATGGTTAAATTACTAAATATTGAGGGTTGTGTTTTTTTTTATTATTATTATTAAAAAAAAAAATGTATTTTAAATGGCTTATATTTGTATGGTGCAAGTGCTTCGTGGGGCTGAGAAAAATTTGTGTGTTTTTGGAGTATTGGGAGGGAGGAATCAGGTACGAGTGGTGGACGGCTGTTCCATATGCATTATGCTGTTGCTGAATTGCTTGGCTAATTCCCTGTTTTTATTATAATCTTCTTTTTCCTTTCCTTATACGATGGAATGACAACGACTCATCGTTGACCAAGTCTTCTTATTATTATTTTGAAGGAAAAAAAAAAAAAAAAAGATTGTGAAATATGTTGTTTCTAGAGATTGTCTTCTTCTTCTTTTTTTCTTTTTTTTTTTCTTTTTTTTTTTTCTTTCTAAGAAAAATCTTTTTGTTTGACTATAATTTTCATGAGGTCCTATATGGTCTAGTTTTGTGAGTTTTCACTCCTTCTCACTTTCTATCATCTATTTCAAGTAATTATTTTAAAATAATTATGTGAAATTATTTAATTAATTTAAATAGTAATTAAAATTGAAGAAAATAATTAATAAAAAAATTAACACTAAAGATTAAAAGTGTGCATAAATGAAATCTTTTGGGTAAATGTGTAGAATCTTTAAACTTAGGACCAAATAGAAATTAATTCAAAATTTAAGGGTAAAGATGTAATATTTTGAAACTTTGAATCCAATGAAAACTAAGCTCATAATTCAATGATAAAAATGTAAATTAAAATGAACATATCTCAACTCGATAAAAAGTGTAAGCTAAGTAAACAATAACTTTAATATATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAGTTTGAAGTAAAGGTACCTAAAAAAGTTGATTAGAGTGGAGAAATTAATATATAGATATATATAAAATGATTGTTTTCAAATATAAAAAAATGAGTCAAATTATTTATAAATATAGAAAAAATTTACTGTCTATCGCAGTCTTATCACTGATAGACAGTAAATTTTTTCTATATTTATAAATAATTTGATATTTGTTCTGTTTACAATAATTTTTAAAAAAGAATCAGTGAGCTATCATACAAAAACGTCTGAAATCCTCTCAAAATCCAAAAAATCAAGGAACACAAATGAAATTTCATAACAACGAGTAGATTTCGTGTTCTTAAATAAGAAACAAAATAATAACAAAATTAGTTATTCACATATCACATAACACATCTCAACCCTTGATCTTCCTTTTCTCTTTTTTCCTTTTATATGGTTATTGTTCATATTTTTACGATCATTATTGTTATTAATTTATTTTATTATGTAGCTTTTATCTAACATTTGCTCTAGATATGCTGTTACTATTTGTGTTATCTTATATTTTCGATTTATCCATTTATTTACCTTAAACATGAGTAGTAAAAAAAAAGAGAGAAAAAAAAGGAGTAACATACATCAGAGGGAGGAAGAAACTTCTCATTCGTGCTGTAAAAAAATCAGTTTGTAAGAGAAAAAAAAAAAAAAATTGAAGGTAGTGAGAAAAAGTTGAAGGAAAGTTAAGTTAAAACGGAGAGAGTGTGTTTTAATAGAAATATATTAGTTTTTAAATTTATTATTATTAATTTTTCATTTTTTCTATATTTGAAAATAATCATTATCATTATTATTATTATTTTATATATAGAGAATCTGTTTGAAAACGGCCCTTAGTGTAACGTCTGCACAATGGGCTACCTTGCAGCCCACTCTAGCATCCCATCAATATTTTAGGGACTAAATTTTAACAGAACCTTTATATAAAAGTTCTATAAATATTTGTGAGGTAAAAATAGAAGGAAAAAAATCGAAGTACGAGAAGAAGAAGAAAAGAAAAGGGAGTGAAGGAGACATAAATAAATAAATAATAAAAGAAAAAAAAGAGTTTTTAACTACTAAGTAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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mRNA sequence

ATGGGTGCTGATATGACCAAAAATGGAGAAGCAGCGAAAGAAGAGAAATTCAAGTTTCTTCCTCACCACATACCATTCTACAAGAAGCCCTTTTTCAAGCCAATACCTCATCACCCAATCCTCAAGAAGCCATTTCCTAAACCACATTATCCACCATTAAGAAAGCAGCAACATAACTGA

Coding sequence (CDS)

ATGGGTGCTGATATGACCAAAAATGGAGAAGCAGCGAAAGAAGAGAAATTCAAGTTTCTTCCTCACCACATACCATTCTACAAGAAGCCCTTTTTCAAGCCAATACCTCATCACCCAATCCTCAAGAAGCCATTTCCTAAACCACATTATCCACCATTAAGAAAGCAGCAACATAACTGA

Protein sequence

MGADMTKNGEAAKEEKFKFLPHHIPFYKKPFFKPIPHHPILKKPFPKPHYPPLRKQQHN

Homology

[Close]

BLAST of Lsi04G000440.1 vs. TrEMBL
Match: A0A0A0KRM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.1e-14
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 2  GADMTKNGEAAKEEKFKFLPHHIPFYKKPFFKPIPHHPILKKPFPKPHYPPL 54
          GA +TKNGE AKEEKFKFLP HIPFYKKP FK IP  PI+KKPFPKP+ PP+
Sbjct: 29 GAGITKNGEEAKEEKFKFLPDHIPFYKKPIFKTIPRQPIIKKPFPKPYRPPV 80

[Close]

BLAST of Lsi04G000440.1 vs. TrEMBL
Match: E5GCK5_CUCME (Annexin OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 7   KNGEAAKEEKFKFLPHHIPFYKKPFFKPIPH-HPILKKPFP 47
           KNGE  +EEKFKFL HH P+YKKPF KPIP+ HP LKKP P
Sbjct: 421 KNGEEEQEEKFKFLHHHKPYYKKPFLKPIPYKHPFLKKPIP 461

[Close]

BLAST of Lsi04G000440.1 vs. NCBI nr
Match: gi|700197123|gb|KGN52300.1| (hypothetical protein Csa_5G623640 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-14
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 2  GADMTKNGEAAKEEKFKFLPHHIPFYKKPFFKPIPHHPILKKPFPKPHYPPL 54
          GA +TKNGE AKEEKFKFLP HIPFYKKP FK IP  PI+KKPFPKP+ PP+
Sbjct: 29 GAGITKNGEEAKEEKFKFLPDHIPFYKKPIFKTIPRQPIIKKPFPKPYRPPV 80

[Close]

BLAST of Lsi04G000440.1 vs. NCBI nr
Match: gi|778706732|ref|XP_011655904.1| (PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-14
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 2   GADMTKNGEAAKEEKFKFLPHHIPFYKKPFFKPIPHHPILKKPFPKPHYPPL 54
           GA +TKNGE AKEEKFKFLP HIPFYKKP FK IP  PI+KKPFPKP+ PP+
Sbjct: 97  GAGITKNGEEAKEEKFKFLPDHIPFYKKPIFKTIPRQPIIKKPFPKPYRPPV 148

[Close]

BLAST of Lsi04G000440.1 vs. NCBI nr
Match: gi|659092159|ref|XP_008446928.1| (PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 7  KNGEAAKEEKFKFLPHHIPFYKKPFFKPIPH-HPILKKPFP 47
          KNGE  +EEKFKFL HH P+YKKPF KPIP+ HP LKKP P
Sbjct: 43 KNGEEEQEEKFKFLHHHKPYYKKPFLKPIPYKHPFLKKPIP 83

[Close]

BLAST of Lsi04G000440.1 vs. NCBI nr
Match: gi|307136392|gb|ADN34202.1| (annexin [Cucumis melo subsp. melo])

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 7   KNGEAAKEEKFKFLPHHIPFYKKPFFKPIPH-HPILKKPFP 47
           KNGE  +EEKFKFL HH P+YKKPF KPIP+ HP LKKP P
Sbjct: 421 KNGEEEQEEKFKFLHHHKPYYKKPFLKPIPYKHPFLKKPIP 461

The following BLAST results are available for this feature:

BLAST of Lsi04G000440.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G000440.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRM7_CUCSA	3.1e-14	76.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1	[more]
E5GCK5_CUCME	1.6e-07	73.17	Annexin OS=Cucumis melo subsp. melo PE=3 SV=1	[more]

BLAST of Lsi04G000440.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi04G000440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197123\|gb\|KGN52300.1\|	4.4e-14	76.92	hypothetical protein Csa_5G623640 [Cucumis sativus]	[more]
gi\|778706732\|ref\|XP_011655904.1\|	4.4e-14	76.92	PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus]	[more]
gi\|659092159\|ref\|XP_008446928.1\|	2.4e-07	73.17	PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo]	[more]
gi\|307136392\|gb\|ADN34202.1\|	2.4e-07	73.17	annexin [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi04G000440	Lsi04G000440	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G000440.1.CDS.3	Lsi04G000440.1.CDS.3	CDS
Lsi04G000440.1.CDS.2	Lsi04G000440.1.CDS.2	CDS
Lsi04G000440.1.CDS.1	Lsi04G000440.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi04G000440.1	Lsi04G000440.1-protein	polypeptide